NO08G01260.1, NO08G01260.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01260.1
Unique NameNO08G01260.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr8:385746..387104 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:385746..387104 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01260.1 vs.
Match: EWM26725.1 (n-acetylglucosaminyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 432.2 bits (1110), Expect = 2.000e-117
Identity = 229/446 (51.35%), Postives = 314/446 (70.40%), Query Frame = 0 
Query:    1 MASFKDQLAGFKGLRATLEKKEVKEAAQARKAQAAKQATKEIGERLLRAGATVRANMLPILGNTAAPITEKRTLALLFLVIDGLPFEDQWREWLRRQDGRTEVKVWVHAKHPEKISSSWVRKRLLPTSYRPAWGSVEITRAELELLRVAIEDPAEMQRFLFASESCLPLLPLDRAADALF-------ATASKSWVKFTNVPNNGYSNQLQFQPLISVGVPSESVWKADQWVALTRTHALALLALPKLFGQEVWSLFRGVSASDEMYFPTCLAVLGELG-STTQMAAVEGNTPCEGAVPNGSSMSSIMRSGGSNVPPSSNTTHQKQQSRSSSSG------SSSSRCSNVINRRLTYCCWGDSPKSPETYQGLPAAVLEKGVKEGCLFIRKFKAGSVSLEEWMRHMQA-QAQGVGGWNHRDEDCDGGAGAKEEEGQSKRERSVVEEGG 432
            MASF+DQLAGFKGLRA+LEKKE K+AA  RK +AA+ A+  +G+RL++AG  +R ++L      +    +KR + LL L+ID LPFE  WREW++RQ+G TEVKVW+HAKHP+K++S WV ++L+P S+ PAWGSV+ITRAELELLRVA+ED +++Q FLFASESC+P+ PLD A  +LF       ++  +SW+ FT+ PNNGYSNQ QF+PL+  G+PS  +WKADQWVALTR HA A+LALPK FG+++W +FR  SASDEMYFPTCLA+LGE+G S  ++   +  + C G+V +GS     +    +    ++ T    ++S    +G          +   V+ RRLTYCCWGDSPKSPETY+GLP+ VLE+G++EG L  RKFKAG+V LEEW+ HM+A + +G  G++ +    D G   ++  G+  ++R   EEGG
Sbjct:    1 MASFRDQLAGFKGLRASLEKKEQKDAAMERKNEAARLASLRLGQRLVKAGRFIRNSILLKRSEASGGCIKKRRMGLLILIIDSLPFEPLWREWMQRQNGATEVKVWIHAKHPDKVTSPWVLEKLIPRSFCPAWGSVDITRAELELLRVAVEDASDIQLFLFASESCIPIQPLDTAVKSLFPVETSGTSSRPQSWLHFTDKPNNGYSNQQQFEPLVKAGLPSTCIWKADQWVALTRPHAEAVLALPKAFGEDLWPMFRAASASDEMYFPTCLALLGEIGPSGPKVVTEDAASSCLGSV-DGSKKEGGLEKESTLTKSTTGTGLGIEESMPPRAGEGVVNAGGKEQQQPVLRRRLTYCCWGDSPKSPETYEGLPSHVLERGIREGSLLGRKFKAGTVKLEEWLAHMRAMEGKGDEGFHVQGVGKDSGNAGQDAVGRQAKKRR-REEGG 444
The following BLAST results are available for this feature:
BLAST of NO08G01260.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26725.12.000e-11751.35n-acetylglucosaminyltransferase [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01260NO08G01260Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01260.1NO08G01260.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01260.1.cds1NO08G01260.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01260.1 ID=NO08G01260.1|Name=NO08G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGACTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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protein sequence of NO08G01260.1

>NO08G01260.1-protein ID=NO08G01260.1-protein|Name=NO08G01260.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MASFKDQLAGFKGLRATLEKKEVKEAAQARKAQAAKQATKEIGERLLRAG
ATVRANMLPILGNTAAPITEKRTLALLFLVIDGLPFEDQWREWLRRQDGR
TEVKVWVHAKHPEKISSSWVRKRLLPTSYRPAWGSVEITRAELELLRVAI
EDPAEMQRFLFASESCLPLLPLDRAADALFATASKSWVKFTNVPNNGYSN
QLQFQPLISVGVPSESVWKADQWVALTRTHALALLALPKLFGQEVWSLFR
GVSASDEMYFPTCLAVLGELGSTTQMAAVEGNTPCEGAVPNGSSMSSIMR
SGGSNVPPSSNTTHQKQQSRSSSSGSSSSRCSNVINRRLTYCCWGDSPKS
PETYQGLPAAVLEKGVKEGCLFIRKFKAGSVSLEEWMRHMQAQAQGVGGW
NHRDEDCDGGAGAKEEEGQSKRERSVVEEGGEGTAARQKRPKNEEECPRE
KQ*
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mRNA from alignment at chr8:385746..387104-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01260.1 ID=NO08G01260.1|Name=NO08G01260.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at chr8:385746..387104- (Nannochloropsis oceanica)
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGACTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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Coding sequence (CDS) from alignment at chr8:385746..387104-

>NO08G01260.1 ID=NO08G01260.1|Name=NO08G01260.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr8:385746..387104- (Nannochloropsis oceanica)
ATGGCGAGTTTCAAGGACCAGCTAGCGGGCTTTAAAGGACTGCGTGCGAC
GCTCGAAAAGAAAGAAGTCAAGGAAGCAGCCCAGGCACGCAAAGCACAGG
CGGCCAAGCAGGCCACAAAGGAAATAGGGGAGCGTCTCCTCCGTGCTGGG
GCCACCGTACGGGCGAACATGCTCCCAATCCTGGGCAATACTGCTGCACC
GATCACGGAAAAACGCACACTGGCTCTGCTATTCCTGGTTATTGACGGCC
TGCCCTTCGAGGACCAATGGCGTGAATGGTTGCGGCGACAAGACGGGCGG
ACAGAGGTCAAAGTGTGGGTTCACGCTAAGCATCCAGAAAAAATCTCTTC
TTCCTGGGTACGCAAAAGGCTGCTTCCGACATCCTATCGCCCTGCGTGGG
GCTCGGTTGAAATAACGCGCGCCGAGCTGGAGCTCCTGCGTGTGGCCATT
GAGGACCCCGCAGAAATGCAGCGCTTCCTCTTTGCTTCTGAGTCATGCCT
CCCCCTCCTCCCCCTCGACCGAGCGGCCGACGCGCTTTTTGCCACGGCAT
CTAAAAGTTGGGTGAAATTCACAAATGTGCCTAATAATGGTTATTCGAAT
CAACTTCAATTTCAACCTCTAATATCGGTAGGCGTCCCCTCTGAGAGTGT
ATGGAAAGCAGACCAATGGGTAGCATTGACAAGAACCCACGCGCTTGCAT
TGCTGGCCTTGCCCAAGTTGTTTGGTCAAGAGGTGTGGTCGTTGTTCAGG
GGGGTGTCGGCGTCTGACGAGATGTACTTTCCGACCTGTCTGGCGGTGCT
GGGGGAGTTGGGATCAACGACGCAAATGGCAGCGGTGGAGGGGAACACTC
CATGTGAAGGAGCGGTACCGAATGGTAGCAGCATGAGCAGCATTATGAGA
AGTGGAGGAAGTAACGTACCGCCGTCCTCAAACACGACCCACCAAAAACA
GCAATCACGAAGCAGCAGCAGCGGCAGCAGCAGCAGTCGCTGTAGTAATG
TGATAAATCGTCGACTCACCTACTGCTGTTGGGGAGACTCGCCGAAGAGC
CCTGAGACATACCAAGGACTACCAGCAGCAGTCTTGGAAAAGGGGGTGAA
AGAAGGGTGTTTGTTTATTAGGAAATTCAAGGCGGGGAGTGTAAGTTTGG
AGGAATGGATGAGGCACATGCAAGCCCAGGCGCAGGGGGTGGGGGGGTGG
AACCATAGGGACGAGGATTGTGATGGGGGTGCTGGAGCGAAGGAGGAGGA
GGGGCAGTCGAAGAGAGAAAGAAGTGTAGTAGAAGAAGGAGGAGAGGGGA
CAGCGGCAAGGCAGAAGAGACCGAAAAACGAGGAGGAATGCCCCAGAGAA
AAACAATAA
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Synonyms
Publications