NO08G01240.1, NO08G01240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01240.1
Unique NameNO08G01240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1143
Alignment locationchr8:383749..385140 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:383749..385140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO08G01240.1 vs.
Match: EWM26641.1 (alpha beta hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 525.8 bits (1353), Expect = 1.100e-145
Identity = 250/357 (70.03%), Postives = 301/357 (84.31%), Query Frame = 0 
Query:   26 GSTKSSSSNNS--------SAGACQSICTLLVGILAILLSGAVNLSYYPPKSFPRVSIHDEFLSEAGGNFTYLSKGRVHYVLREPAEPSPLPPVVLVHGFSMGCVIWNDIAEALVERGGRRVLAFDLFGRGYSDAAFPCDLELFTGQLSELLFSLQPILGPGPYDIFGTSMGGAIAVHFTHLYPQHVRQLVLLAPAGLPVHVPFTALLGKLPLIGDIFMPLLGPISLKTHARKGHAHPDDPALKPIFAAMGRRLMRQSKLNPGFFPALLSTLRNFPLNELEWAYESIGKTRREGTVLVVWGDKDEVTPFTHAGRVLEMLEDGRKKVELLVLTDCGHVDALEVPRSIDEMVPPLIKHL 375
            G T S  S++S        + G+  S C LLVG LA+LLSG V+LS YPP+SFPRV + +EFL EAGG F  LSKGRVHYVLREP  PS LPPVVL+HGFS+GC+IWND+A+ALV +GGRRVLAFDL+GRGYSDAAFPCD+ELF+GQL+ELLF+LQPILGPGP DIFGTSMGGAIAVHFTHL+P+ VR+L LLAPAGLPV+VP+TA LGKLP  GDIFMP+LGP+SL+T+ARKGHA+PDDPA +P FAAM R L RQS++NP FFPALLSTLR+FPLN+L WAYES+ +TR++G+VLV+WGD+D +TPF HA RV+++L  G  K +LLVL DCGHVD LEV R+I+EM+PPL+ HL
Sbjct:   11 GGTFSPGSDDSPVKMPGQQARGSLVSTCALLVGALAVLLSGTVSLSRYPPRSFPRVVVGEEFLQEAGGQFVTLSKGRVHYVLREPTTPSDLPPVVLIHGFSLGCIIWNDVADALVSQGGRRVLAFDLYGRGYSDAAFPCDVELFSGQLTELLFALQPILGPGPIDIFGTSMGGAIAVHFTHLHPERVRRLALLAPAGLPVNVPWTAKLGKLPFFGDIFMPILGPVSLRTYARKGHAYPDDPAFQPTFAAMSRVLRRQSQVNPAFFPALLSTLRDFPLNDLVWAYESVARTRKDGSVLVIWGDRDVITPFMHASRVIDLL-GGPAKAKLLVLDDCGHVDPLEVQRNIEEMMPPLLAHL 366
The following BLAST results are available for this feature:
BLAST of NO08G01240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26641.11.100e-14570.03alpha beta hydrolase [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01240NO08G01240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01240.1NO08G01240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01240.1.cds1NO08G01240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G01240.1.cds2NO08G01240.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01240.1 ID=NO08G01240.1|Name=NO08G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1143bp
ATGAGCTATACAGGCACCTATGCCAATAGCAGCAATGGCAATGGTACCAG
CATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAAAGCAGCAGCAGCA
ACAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCACCCTTCTCGTCGGC
ATCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCTCCTACTATCCCCC
CAAATCGTTTCCGCGAGTCTCCATCCACGACGAATTTCTTTCTGAGGCTG
GAGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCACTATGTCTTGCGC
GAGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTATTAGTCCACGGCTT
TTCTATGGGCTGTGTCATATGGAATGATATTGCCGAAGCTCTTGTTGAGC
GAGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGGAAGGGGCTACAGC
GATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCGGCCAATTATCCGA
ATTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGTCCATATGATATAT
TCGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTTCACTCATCTGTAC
CCTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGGCGGGTCTACCGGT
CCATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCCTTGATTGGGGATA
TCTTCATGCCATTGCTGGGACCCATTTCATTGAAGACACACGCGAGGAAA
GGACATGCCCACCCGGATGACCCGGCCTTGAAGCCTATTTTTGCGGCGAT
GGGGAGGAGGCTCATGAGGCAAAGCAAGCTGAACCCCGGATTCTTCCCGG
CGTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGAATTGGAGTGGGCG
TATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGGTATTAGTCGTGTG
GGGGGATAAGGATGAGGTGACGCCGTTCACGCATGCGGGGAGGGTGCTTG
AGATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCTCGTTTTGACGGAT
TGTGGCCATGTGGATGCATTGGAGGTGCCGAGGAGCATTGATGAGATGGT
GCCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTGTGGTAG
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protein sequence of NO08G01240.1

>NO08G01240.1-protein ID=NO08G01240.1-protein|Name=NO08G01240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MSYTGTYANSSNGNGTSIKSNSKTNGSTKSSSSNNSSAGACQSICTLLVG
ILAILLSGAVNLSYYPPKSFPRVSIHDEFLSEAGGNFTYLSKGRVHYVLR
EPAEPSPLPPVVLVHGFSMGCVIWNDIAEALVERGGRRVLAFDLFGRGYS
DAAFPCDLELFTGQLSELLFSLQPILGPGPYDIFGTSMGGAIAVHFTHLY
PQHVRQLVLLAPAGLPVHVPFTALLGKLPLIGDIFMPLLGPISLKTHARK
GHAHPDDPALKPIFAAMGRRLMRQSKLNPGFFPALLSTLRNFPLNELEWA
YESIGKTRREGTVLVVWGDKDEVTPFTHAGRVLEMLEDGRKKVELLVLTD
CGHVDALEVPRSIDEMVPPLIKHLAGEGLW*
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mRNA from alignment at chr8:383749..385140+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01240.1 ID=NO08G01240.1|Name=NO08G01240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1392bp|location=Sequence derived from alignment at chr8:383749..385140+ (Nannochloropsis oceanica)
ATGAGCTATACAGGTAAGTCCCCTCCTTTTTGACCAGACATGACCAGTCT
GCAGACCCAGGAGAGGAGTGTCGACCAGTCTGCAGACCCAGGAGAGGAGT
GTCAAGGAGGGGCGTGGATTGAGTGTGTGCCCGTCTGTCGAAGTATTTCG
TCGTGCAGCCCTAGCCTCCCGTCCCTCATTCCCCCTTCCCCTCGCTGCCT
CGCTTGACAACCACGTCCAGACGTGCAGCGCTGATCCTCTTCCCCACTCA
AACACAATCCAGGCACCTATGCCAATAGCAGCAATGGCAATGGTACCAGC
ATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAAAGCAGCAGCAGCAA
CAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCACCCTTCTCGTCGGCA
TCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCTCCTACTATCCCCCC
AAATCGTTTCCGCGAGTCTCCATCCACGACGAATTTCTTTCTGAGGCTGG
AGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCACTATGTCTTGCGCG
AGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTATTAGTCCACGGCTTT
TCTATGGGCTGTGTCATATGGAATGATATTGCCGAAGCTCTTGTTGAGCG
AGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGGAAGGGGCTACAGCG
ATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCGGCCAATTATCCGAA
TTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGTCCATATGATATATT
CGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTTCACTCATCTGTACC
CTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGGCGGGTCTACCGGTC
CATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCCTTGATTGGGGATAT
CTTCATGCCATTGCTGGGACCCATTTCATTGAAGACACACGCGAGGAAAG
GACATGCCCACCCGGATGACCCGGCCTTGAAGCCTATTTTTGCGGCGATG
GGGAGGAGGCTCATGAGGCAAAGCAAGCTGAACCCCGGATTCTTCCCGGC
GTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGAATTGGAGTGGGCGT
ATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGGTATTAGTCGTGTGG
GGGGATAAGGATGAGGTGACGCCGTTCACGCATGCGGGGAGGGTGCTTGA
GATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCTCGTTTTGACGGATT
GTGGCCATGTGGATGCATTGGAGGTGCCGAGGAGCATTGATGAGATGGTG
CCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTGTGGTAG
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Coding sequence (CDS) from alignment at chr8:383749..385140+

>NO08G01240.1 ID=NO08G01240.1|Name=NO08G01240.1|organism=Nannochloropsis oceanica|type=CDS|length=1143bp|location=Sequence derived from alignment at chr8:383749..385140+ (Nannochloropsis oceanica)
ATGAGCTATACAGGCACCTATGCCAATAGCAGCAATGGCAATGGTACCAG
CATCAAGAGTAACAGCAAGACCAATGGCAGCACCAAAAGCAGCAGCAGCA
ACAACAGCAGCGCTGGAGCCTGTCAAAGCATCTGCACCCTTCTCGTCGGC
ATCCTGGCTATCTTGCTGAGCGGTGCCGTCAACCTCTCCTACTATCCCCC
CAAATCGTTTCCGCGAGTCTCCATCCACGACGAATTTCTTTCTGAGGCTG
GAGGAAACTTTACCTACCTTTCCAAAGGCCGCGTGCACTATGTCTTGCGC
GAGCCCGCTGAACCCTCCCCCTTGCCCCCCGTCGTATTAGTCCACGGCTT
TTCTATGGGCTGTGTCATATGGAATGATATTGCCGAAGCTCTTGTTGAGC
GAGGAGGTCGTCGTGTCCTCGCATTTGATTTATTCGGAAGGGGCTACAGC
GATGCGGCCTTTCCATGCGACCTGGAGTTGTTCACCGGCCAATTATCCGA
ATTGTTGTTTTCGCTGCAACCAATCTTGGGTCCTGGTCCATATGATATAT
TCGGGACCTCGATGGGAGGGGCGATTGCCGTTCATTTCACTCATCTGTAC
CCTCAGCATGTGCGTCAGCTCGTGTTGCTTGCCCCGGCGGGTCTACCGGT
CCATGTGCCCTTCACGGCGCTCTTGGGGAAGTTACCCTTGATTGGGGATA
TCTTCATGCCATTGCTGGGACCCATTTCATTGAAGACACACGCGAGGAAA
GGACATGCCCACCCGGATGACCCGGCCTTGAAGCCTATTTTTGCGGCGAT
GGGGAGGAGGCTCATGAGGCAAAGCAAGCTGAACCCCGGATTCTTCCCGG
CGTTGCTGTCGACTTTGAGGAACTTCCCGCTGAATGAATTGGAGTGGGCG
TATGAAAGCATAGGGAAAACGAGGCGGGAGGGGACGGTATTAGTCGTGTG
GGGGGATAAGGATGAGGTGACGCCGTTCACGCATGCGGGGAGGGTGCTTG
AGATGTTGGAGGATGGGAGGAAGAAGGTGGAATTGCTCGTTTTGACGGAT
TGTGGCCATGTGGATGCATTGGAGGTGCCGAGGAGCATTGATGAGATGGT
GCCACCGCTAATTAAGCACTTGGCAGGGGAGGGATTGTGGTAG
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Synonyms
Publications