NO08G01230.1, NO08G01230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01230.1
Unique NameNO08G01230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1800
Alignment locationchr8:381245..383044 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:381245..383044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01230.1 vs.
Match: EWM26681.1 (anion exchanger family [Nannochloropsis gaditana])

HSP 1 Score: 926.8 bits (2394), Expect = 3.500e-266
Identity = 490/604 (81.13%), Postives = 531/604 (87.91%), Query Frame = 0 
Query:    2 PATVKGVPTLISLLLLAGMVLTNTHAF-IRTPAGRSLHVPCHSL-LSSRPA--ARTPILLPTSRANHKLRPFCSAA--AASAVPPPPSSIPAITNEPNGDTSKSQKLFERPFKGIMEDVRRKAPHYLSDFKDGANLKGVAATFFLFFACLAPAVAFGGLMGKLTEGNIGTMEMLLATAYNGMAYALFAGQPLTIIGSTGPVLAFTLVLYRTAQNLALPFLPLYSWVGIWTSFILFVSSITSLSNMVNYFTRFTDEIFSLLISLIFLYEAVKDLSSFFLNPSVGFAKALLSLVVAFTTFNTGIALAGLRRGKVLTKGIRDTIADFAPTIGVLAGCFLTVLAKTHKGEVLPTLLIPDTFTTSLGRPWLVNIWQLPVWARWAAFIPALMSSVLLFMDQNITVRLVNSPAHKIKKGYGLHLDMFVVSILTFVNSLFGLPWLVAATVRSLNHVRACARFGTTQEGEVVIEGMQENRMTGLAIHSLIGFAILSCRPLLGQVPLAVLMGLFLYLGKSSLGGNQMWERLKLLITDPAQRPKAAWAQKVPYKVSAAFTALQFACLGGMWALKSSSIGVLFPLLIAALAPIRVGIERVGWFSKKDLEVLDSEDE 600
            P+     P  + LL+LA +++ NTH F   TPA R L  P ++L  +  PA   R P+  P+    +KLRP CSAA  AAS +P PP S PA  +    DTSKSQK+ ERPFKGI+EDV RKAPHYLSDFKDGAN+KGVAA FFLFFACLAPAVAFGGLMGKLTEGNIGTMEMLLATA NG+AYALF+GQPLTIIGSTGPVLAFTLVLYRTAQNLALPFLPLYSWVGIWTS ILF+SS+TSLSN+VNYFTRFTDEIFSLLISLIFLYEAVKDLSSFF+NPSVGFAKALLSLV+A TTFNT I LAGLRRGK+ TK +RD IADFAPTIGVLAGCFLT LAK  K E LPTLLIPD+F+TSLGRPWLVNI+ LP+WARWAAFIPALMSSVLLFMDQNITVRLVNSP+HKIKKGYGLHLDMFVVSILTF+NSLFGLPWLVAATVRSLNHVRACARF +T++GEVVIE MQENR+TGLAIHSLIG AIL  RPLLGQVPLAVLMGLFLYLGKSSL GNQMWERLKLLITDPAQRPKAAWAQKVP+KVSAAFT LQFACLGGMWALKSS IGVLFPLLIAALAPIRV IE++GWF KKDLE+LDSED+
Sbjct:    3 PSMQVPTPKTVLLLVLALILMANTHVFAFVTPASRPLKAPTNALRFTCSPAIPVRAPVFKPSRI--YKLRPACSAAVPAASDMPVPPMS-PATDSSSEEDTSKSQKILERPFKGIVEDVHRKAPHYLSDFKDGANVKGVAAIFFLFFACLAPAVAFGGLMGKLTEGNIGTMEMLLATASNGIAYALFSGQPLTIIGSTGPVLAFTLVLYRTAQNLALPFLPLYSWVGIWTSLILFLSSVTSLSNLVNYFTRFTDEIFSLLISLIFLYEAVKDLSSFFINPSVGFAKALLSLVIAVTTFNTSITLAGLRRGKLFTKRVRDVIADFAPTIGVLAGCFLTALAKAKKAEALPTLLIPDSFSTSLGRPWLVNIFALPIWARWAAFIPALMSSVLLFMDQNITVRLVNSPSHKIKKGYGLHLDMFVVSILTFINSLFGLPWLVAATVRSLNHVRACARFKSTEDGEVVIESMQENRLTGLAIHSLIGVAILGFRPLLGQVPLAVLMGLFLYLGKSSLAGNQMWERLKLLITDPAQRPKAAWAQKVPFKVSAAFTGLQFACLGGMWALKSSPIGVLFPLLIAALAPIRVAIEKLGWFDKKDLEILDSEDD 603
The following BLAST results are available for this feature:
BLAST of NO08G01230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26681.13.500e-26681.13anion exchanger family [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01230NO08G01230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01230.1NO08G01230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01230.1.cds1NO08G01230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01230.1 ID=NO08G01230.1|Name=NO08G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
ATGCCGGCGACCGTAAAAGGCGTGCCCACCCTGATTTCCCTGCTGCTACT
GGCGGGGATGGTCCTCACCAATACCCATGCGTTTATCCGGACACCTGCCG
GCCGCTCTCTTCATGTGCCCTGTCACTCCCTCCTCTCCTCCCGCCCGGCT
GCACGCACCCCCATCCTCCTTCCAACATCGCGCGCTAATCATAAGCTACG
CCCATTCTGCTCTGCGGCTGCTGCCTCGGCGGTCCCGCCTCCTCCCTCCT
CGATCCCTGCTATCACCAACGAGCCCAACGGCGACACGTCCAAGTCTCAA
AAACTCTTCGAACGCCCTTTCAAGGGCATCATGGAAGACGTCCGTCGCAA
GGCCCCTCACTACCTGTCCGACTTCAAAGATGGTGCAAATCTCAAGGGAG
TCGCCGCAACTTTCTTTCTCTTCTTCGCCTGTCTTGCCCCGGCCGTGGCT
TTTGGTGGGCTCATGGGCAAGCTCACAGAGGGAAACATTGGAACCATGGA
GATGCTGCTTGCCACCGCATACAATGGCATGGCCTACGCACTTTTCGCAG
GGCAGCCGTTGACGATCATTGGGAGCACGGGGCCGGTGTTAGCATTCACA
CTTGTGTTGTACCGGACCGCGCAAAATTTGGCGTTACCTTTTTTGCCACT
GTATTCGTGGGTCGGGATTTGGACGTCTTTCATTCTGTTCGTGTCGTCGA
TAACGAGTTTATCGAACATGGTGAATTACTTCACCCGCTTCACTGACGAG
ATTTTCTCGTTGCTAATCTCTTTGATCTTCCTCTATGAGGCAGTCAAGGA
CTTGTCTTCCTTCTTCCTCAACCCCTCCGTGGGGTTCGCCAAGGCACTCC
TCTCCCTTGTCGTCGCCTTTACCACGTTCAACACCGGTATCGCCCTGGCA
GGCCTCCGTCGTGGGAAGGTGCTCACGAAAGGAATTCGTGACACCATCGC
TGATTTCGCCCCCACCATTGGAGTTCTTGCCGGATGCTTCCTGACCGTGC
TTGCTAAAACTCACAAGGGGGAAGTACTGCCAACGCTCCTCATTCCCGAT
ACATTCACAACTTCTCTCGGTAGGCCTTGGTTGGTGAATATCTGGCAGTT
GCCTGTCTGGGCCCGGTGGGCGGCGTTTATCCCAGCCTTGATGTCGAGTG
TATTGTTGTTCATGGATCAGAATATTACGGTGAGGTTGGTGAATTCCCCG
GCGCATAAGATAAAGAAAGGGTATGGCCTTCATCTGGACATGTTCGTTGT
ATCAATCTTGACGTTTGTGAACTCTTTGTTCGGATTGCCTTGGTTGGTGG
CGGCGACGGTGAGGAGCTTAAACCATGTGAGGGCTTGTGCCCGGTTTGGG
ACGACACAGGAGGGGGAGGTGGTCATCGAGGGCATGCAAGAAAATCGAAT
GACGGGGCTGGCGATTCATTCGTTGATTGGGTTTGCGATTTTGAGCTGTA
GGCCTCTCTTGGGACAGGTCCCTCTGGCAGTGCTGATGGGGTTGTTCTTG
TATTTGGGCAAGAGTTCTTTGGGGGGGAATCAGATGTGGGAAAGGCTTAA
GCTTCTGATTACAGACCCGGCCCAAAGGCCAAAGGCGGCATGGGCGCAGA
AGGTGCCGTACAAGGTGAGTGCCGCGTTTACCGCGCTGCAGTTTGCGTGT
TTGGGAGGGATGTGGGCGTTAAAGAGTTCGTCGATTGGTGTGCTTTTCCC
GTTGTTGATTGCTGCCCTGGCCCCAATTCGGGTGGGGATCGAGAGGGTGG
GGTGGTTCAGTAAGAAGGACTTGGAGGTGTTGGATAGCGAGGATGAATGA
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protein sequence of NO08G01230.1

>NO08G01230.1-protein ID=NO08G01230.1-protein|Name=NO08G01230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MPATVKGVPTLISLLLLAGMVLTNTHAFIRTPAGRSLHVPCHSLLSSRPA
ARTPILLPTSRANHKLRPFCSAAAASAVPPPPSSIPAITNEPNGDTSKSQ
KLFERPFKGIMEDVRRKAPHYLSDFKDGANLKGVAATFFLFFACLAPAVA
FGGLMGKLTEGNIGTMEMLLATAYNGMAYALFAGQPLTIIGSTGPVLAFT
LVLYRTAQNLALPFLPLYSWVGIWTSFILFVSSITSLSNMVNYFTRFTDE
IFSLLISLIFLYEAVKDLSSFFLNPSVGFAKALLSLVVAFTTFNTGIALA
GLRRGKVLTKGIRDTIADFAPTIGVLAGCFLTVLAKTHKGEVLPTLLIPD
TFTTSLGRPWLVNIWQLPVWARWAAFIPALMSSVLLFMDQNITVRLVNSP
AHKIKKGYGLHLDMFVVSILTFVNSLFGLPWLVAATVRSLNHVRACARFG
TTQEGEVVIEGMQENRMTGLAIHSLIGFAILSCRPLLGQVPLAVLMGLFL
YLGKSSLGGNQMWERLKLLITDPAQRPKAAWAQKVPYKVSAAFTALQFAC
LGGMWALKSSSIGVLFPLLIAALAPIRVGIERVGWFSKKDLEVLDSEDE*
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mRNA from alignment at chr8:381245..383044-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01230.1 ID=NO08G01230.1|Name=NO08G01230.1|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp|location=Sequence derived from alignment at chr8:381245..383044- (Nannochloropsis oceanica)
ATGCCGGCGACCGTAAAAGGCGTGCCCACCCTGATTTCCCTGCTGCTACT
GGCGGGGATGGTCCTCACCAATACCCATGCGTTTATCCGGACACCTGCCG
GCCGCTCTCTTCATGTGCCCTGTCACTCCCTCCTCTCCTCCCGCCCGGCT
GCACGCACCCCCATCCTCCTTCCAACATCGCGCGCTAATCATAAGCTACG
CCCATTCTGCTCTGCGGCTGCTGCCTCGGCGGTCCCGCCTCCTCCCTCCT
CGATCCCTGCTATCACCAACGAGCCCAACGGCGACACGTCCAAGTCTCAA
AAACTCTTCGAACGCCCTTTCAAGGGCATCATGGAAGACGTCCGTCGCAA
GGCCCCTCACTACCTGTCCGACTTCAAAGATGGTGCAAATCTCAAGGGAG
TCGCCGCAACTTTCTTTCTCTTCTTCGCCTGTCTTGCCCCGGCCGTGGCT
TTTGGTGGGCTCATGGGCAAGCTCACAGAGGGAAACATTGGAACCATGGA
GATGCTGCTTGCCACCGCATACAATGGCATGGCCTACGCACTTTTCGCAG
GGCAGCCGTTGACGATCATTGGGAGCACGGGGCCGGTGTTAGCATTCACA
CTTGTGTTGTACCGGACCGCGCAAAATTTGGCGTTACCTTTTTTGCCACT
GTATTCGTGGGTCGGGATTTGGACGTCTTTCATTCTGTTCGTGTCGTCGA
TAACGAGTTTATCGAACATGGTGAATTACTTCACCCGCTTCACTGACGAG
ATTTTCTCGTTGCTAATCTCTTTGATCTTCCTCTATGAGGCAGTCAAGGA
CTTGTCTTCCTTCTTCCTCAACCCCTCCGTGGGGTTCGCCAAGGCACTCC
TCTCCCTTGTCGTCGCCTTTACCACGTTCAACACCGGTATCGCCCTGGCA
GGCCTCCGTCGTGGGAAGGTGCTCACGAAAGGAATTCGTGACACCATCGC
TGATTTCGCCCCCACCATTGGAGTTCTTGCCGGATGCTTCCTGACCGTGC
TTGCTAAAACTCACAAGGGGGAAGTACTGCCAACGCTCCTCATTCCCGAT
ACATTCACAACTTCTCTCGGTAGGCCTTGGTTGGTGAATATCTGGCAGTT
GCCTGTCTGGGCCCGGTGGGCGGCGTTTATCCCAGCCTTGATGTCGAGTG
TATTGTTGTTCATGGATCAGAATATTACGGTGAGGTTGGTGAATTCCCCG
GCGCATAAGATAAAGAAAGGGTATGGCCTTCATCTGGACATGTTCGTTGT
ATCAATCTTGACGTTTGTGAACTCTTTGTTCGGATTGCCTTGGTTGGTGG
CGGCGACGGTGAGGAGCTTAAACCATGTGAGGGCTTGTGCCCGGTTTGGG
ACGACACAGGAGGGGGAGGTGGTCATCGAGGGCATGCAAGAAAATCGAAT
GACGGGGCTGGCGATTCATTCGTTGATTGGGTTTGCGATTTTGAGCTGTA
GGCCTCTCTTGGGACAGGTCCCTCTGGCAGTGCTGATGGGGTTGTTCTTG
TATTTGGGCAAGAGTTCTTTGGGGGGGAATCAGATGTGGGAAAGGCTTAA
GCTTCTGATTACAGACCCGGCCCAAAGGCCAAAGGCGGCATGGGCGCAGA
AGGTGCCGTACAAGGTGAGTGCCGCGTTTACCGCGCTGCAGTTTGCGTGT
TTGGGAGGGATGTGGGCGTTAAAGAGTTCGTCGATTGGTGTGCTTTTCCC
GTTGTTGATTGCTGCCCTGGCCCCAATTCGGGTGGGGATCGAGAGGGTGG
GGTGGTTCAGTAAGAAGGACTTGGAGGTGTTGGATAGCGAGGATGAATGA
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Coding sequence (CDS) from alignment at chr8:381245..383044-

>NO08G01230.1 ID=NO08G01230.1|Name=NO08G01230.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr8:381245..383044- (Nannochloropsis oceanica)
ATGCCGGCGACCGTAAAAGGCGTGCCCACCCTGATTTCCCTGCTGCTACT
GGCGGGGATGGTCCTCACCAATACCCATGCGTTTATCCGGACACCTGCCG
GCCGCTCTCTTCATGTGCCCTGTCACTCCCTCCTCTCCTCCCGCCCGGCT
GCACGCACCCCCATCCTCCTTCCAACATCGCGCGCTAATCATAAGCTACG
CCCATTCTGCTCTGCGGCTGCTGCCTCGGCGGTCCCGCCTCCTCCCTCCT
CGATCCCTGCTATCACCAACGAGCCCAACGGCGACACGTCCAAGTCTCAA
AAACTCTTCGAACGCCCTTTCAAGGGCATCATGGAAGACGTCCGTCGCAA
GGCCCCTCACTACCTGTCCGACTTCAAAGATGGTGCAAATCTCAAGGGAG
TCGCCGCAACTTTCTTTCTCTTCTTCGCCTGTCTTGCCCCGGCCGTGGCT
TTTGGTGGGCTCATGGGCAAGCTCACAGAGGGAAACATTGGAACCATGGA
GATGCTGCTTGCCACCGCATACAATGGCATGGCCTACGCACTTTTCGCAG
GGCAGCCGTTGACGATCATTGGGAGCACGGGGCCGGTGTTAGCATTCACA
CTTGTGTTGTACCGGACCGCGCAAAATTTGGCGTTACCTTTTTTGCCACT
GTATTCGTGGGTCGGGATTTGGACGTCTTTCATTCTGTTCGTGTCGTCGA
TAACGAGTTTATCGAACATGGTGAATTACTTCACCCGCTTCACTGACGAG
ATTTTCTCGTTGCTAATCTCTTTGATCTTCCTCTATGAGGCAGTCAAGGA
CTTGTCTTCCTTCTTCCTCAACCCCTCCGTGGGGTTCGCCAAGGCACTCC
TCTCCCTTGTCGTCGCCTTTACCACGTTCAACACCGGTATCGCCCTGGCA
GGCCTCCGTCGTGGGAAGGTGCTCACGAAAGGAATTCGTGACACCATCGC
TGATTTCGCCCCCACCATTGGAGTTCTTGCCGGATGCTTCCTGACCGTGC
TTGCTAAAACTCACAAGGGGGAAGTACTGCCAACGCTCCTCATTCCCGAT
ACATTCACAACTTCTCTCGGTAGGCCTTGGTTGGTGAATATCTGGCAGTT
GCCTGTCTGGGCCCGGTGGGCGGCGTTTATCCCAGCCTTGATGTCGAGTG
TATTGTTGTTCATGGATCAGAATATTACGGTGAGGTTGGTGAATTCCCCG
GCGCATAAGATAAAGAAAGGGTATGGCCTTCATCTGGACATGTTCGTTGT
ATCAATCTTGACGTTTGTGAACTCTTTGTTCGGATTGCCTTGGTTGGTGG
CGGCGACGGTGAGGAGCTTAAACCATGTGAGGGCTTGTGCCCGGTTTGGG
ACGACACAGGAGGGGGAGGTGGTCATCGAGGGCATGCAAGAAAATCGAAT
GACGGGGCTGGCGATTCATTCGTTGATTGGGTTTGCGATTTTGAGCTGTA
GGCCTCTCTTGGGACAGGTCCCTCTGGCAGTGCTGATGGGGTTGTTCTTG
TATTTGGGCAAGAGTTCTTTGGGGGGGAATCAGATGTGGGAAAGGCTTAA
GCTTCTGATTACAGACCCGGCCCAAAGGCCAAAGGCGGCATGGGCGCAGA
AGGTGCCGTACAAGGTGAGTGCCGCGTTTACCGCGCTGCAGTTTGCGTGT
TTGGGAGGGATGTGGGCGTTAAAGAGTTCGTCGATTGGTGTGCTTTTCCC
GTTGTTGATTGCTGCCCTGGCCCCAATTCGGGTGGGGATCGAGAGGGTGG
GGTGGTTCAGTAAGAAGGACTTGGAGGTGTTGGATAGCGAGGATGAATGA
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Synonyms
Publications