NO08G01190.1, NO08G01190.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01190.1
Unique NameNO08G01190.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1908
Alignment locationchr8:370038..371945 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:370038..371945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G01190.1 vs.
Match: EWM26682.1 (glucosidase ii beta [Nannochloropsis gaditana])

HSP 1 Score: 551.2 bits (1419), Expect = 4.200e-153
Identity = 298/603 (49.42%), Postives = 389/603 (64.51%), Query Frame = 0 
Query:   27 AAADASCPVSKARTNDDYCDDLVSGCDETETSACSFIKRTPTFQCNASVTGEPHLLPASRVGDTVCDCCDGSDEAPGVCPDACGALQEEYLDNAFQWFEDVMAGKASRDAAVVEARGIMAGWEAELETVEAAHVELQQLLRKLKDLKAKEERMEGWENFWWLRE------------EAKRRGEVLEEEQAQQQPQEEQEEKCEEKAAAATTDESLVEEGDQDETTSDSSTSIPNATFDNDAAAAPLPASFTPARTVSVAFTEVGNQMGEVDNFEDRLLSATATDGTLSLSLRTYLKTVASSSSYFSSPAASSKAATSVWEPTEILELNLQAMGALVLGPFQAIFWMMSICKNELMDVL---RINKHKTHHWSAADAAAAPATAVTTTAAVAFEKGGWVGAMKWVVDAIARGPYTAMALLRPETIPNAPERMEAALLRFAVEKVEGEVERKLGRMDELREALVETWYSAVKGDEGVFRTWKDKCFEKQDKDFAYKICPFKEVKQNYLLVGKWTGWIQRDDGIGSKDGAGPVMYFTEGQQCWNGPKRTALVQLWCGPEEAVVEVTEPSVCLYDFVMTTPLVCDEVVVKEAEERLRRMGVKLPGDD 615
            AA  A CPV  A  ND+YCDDLV+GCDE +TSACS +KR  TF C+ASVTGEPHLLPASRVGDT+CDCCDGSDEAPG CP+ C +LQEEYL++AFQW+EDV  GK  RDAA+ EA+ I+ GW+ E+  +EA+    + LL KL+ L+A EER EGWENFWWLRE            + +R GE  E   A + P+ E E   E +  +   D  L +EG+  E        + +           LPA                    E D     + +  ATD   SLSL+ YL +  ++S+  +  A++ K A + WEP E+LELNLQA+GAL+LGPF  + W + +C+NEL + L        K H     D           TA       G  G ++W +DAI +GP  A+AL RPETI +APER+EAALLRFAV ++EG+ E ++GR++ELRE +    YSA +GDE V+ TW+D CFEK +K F YK+CPF EVKQ+++LVG+W  WI+R+DG G  +GAGPVM+F+EGQQCWNGPKR+A+VQLWCG EE +VEV+EP+VC+YDFV+ TPL C E V+ +AEERLR +G+KLP D+
Sbjct:   21 AADRAPCPVPAALHNDNYCDDLVNGCDEPKTSACSMVKRASTFACDASVTGEPHLLPASRVGDTICDCCDGSDEAPGTCPNTCESLQEEYLNDAFQWYEDVTVGKERRDAAMAEAQAILGGWQVEMNKIEASVSAHRSLLTKLRKLRAIEERKEGWENFWWLREKRRRSVGRTRLCQGEREGEEEESVAAPEMPESETEPSAEGEKDSNDMDAELADEGEDQEGVPSEGAGVLHRV------RVSLPAL-----------------EAEEDPLLHAMRATIATDERRSLSLQAYLDSDMAASAT-AQAASTLKTALAAWEPAEVLELNLQALGALILGPFYMLSWALRLCQNELWEALGKLTSGDKKRHVQQGFDRGLEGKVETFETAL----SPGLKGKLEWALDAITQGPILALALARPETIADAPERLEAALLRFAVNQLEGQCEEEVGRVEELREWMEYPGYSAEEGDEKVYVTWRDTCFEKSEKTFDYKVCPFHEVKQDHVLVGRWAAWIKREDGQGVAEGAGPVMFFSEGQQCWNGPKRSAVVQLWCGLEEQLVEVSEPTVCVYDFVLMTPLACTEAVLAQAEERLRNLGIKLPKDE 595
The following BLAST results are available for this feature:
BLAST of NO08G01190.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26682.14.200e-15349.42glucosidase ii beta [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01190NO08G01190Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01190.1NO08G01190.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01190.1.cds1NO08G01190.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01190.1 ID=NO08G01190.1|Name=NO08G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp
ATGATCTCACGCTTCTCTCTCGTCGCCGTGGCCGTAGCAATGGCCGTGGC
ATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGATGCCTCTTGTC
CTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACGATCTGGTATCA
GGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATCAAACGAACTCC
CACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCATTTGCTGCCTG
CTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATGGCTCCGATGAG
GCGCCTGGCGTGTGCCCGGATGCATGCGGGGCACTGCAAGAAGAGTACCT
GGATAACGCCTTCCAATGGTTCGAGGACGTCATGGCCGGTAAAGCAAGTC
GGGATGCAGCTGTGGTGGAGGCACGGGGGATCATGGCGGGATGGGAGGCG
GAGCTGGAAACCGTAGAGGCTGCCCACGTAGAGCTTCAACAGTTGCTAAG
AAAGTTGAAGGATCTCAAGGCCAAGGAAGAAAGGATGGAGGGATGGGAGA
ATTTTTGGTGGTTACGCGAGGAGGCAAAGCGGAGGGGAGAAGTGCTGGAA
GAGGAGCAGGCGCAGCAGCAGCCGCAAGAGGAGCAGGAAGAGAAGTGCGA
GGAGAAGGCAGCCGCAGCGACAACGGATGAATCTCTTGTGGAAGAGGGCG
ACCAGGACGAGACTACGAGTGACTCCTCAACCTCGATACCCAACGCCACT
TTTGATAATGACGCCGCTGCTGCTCCATTGCCGGCCTCCTTCACTCCTGC
CCGCACAGTTTCCGTCGCGTTTACTGAAGTGGGCAACCAAATGGGAGAGG
TAGACAATTTCGAAGACCGCCTTCTCTCCGCCACCGCCACAGATGGCACG
CTCAGCTTATCACTACGAACATATCTGAAAACAGTCGCCTCTTCCTCCTC
CTACTTCTCCTCTCCCGCGGCATCGTCAAAAGCCGCCACCTCTGTCTGGG
AGCCAACCGAGATTCTAGAATTGAATCTACAGGCGATGGGTGCCCTGGTA
CTTGGGCCTTTTCAAGCCATCTTTTGGATGATGAGTATTTGCAAAAACGA
ATTGATGGACGTTCTGAGGATCAATAAGCACAAGACACACCACTGGAGTG
CTGCCGATGCTGCAGCTGCTCCTGCTACCGCTGTTACGACTACAGCTGCT
GTTGCGTTCGAAAAGGGCGGATGGGTAGGTGCGATGAAATGGGTGGTCGA
CGCGATTGCTCGTGGCCCGTATACGGCTATGGCTTTGCTTCGTCCTGAGA
CAATTCCTAATGCCCCTGAACGGATGGAGGCCGCCTTGTTAAGGTTTGCA
GTGGAGAAAGTGGAAGGGGAGGTTGAGAGGAAGTTAGGGCGGATGGACGA
GTTGAGAGAGGCCTTGGTTGAAACGTGGTATAGTGCAGTGAAAGGGGATG
AGGGGGTATTTCGTACGTGGAAGGACAAGTGCTTCGAGAAACAAGATAAG
GATTTTGCGTATAAAATTTGTCCTTTCAAGGAGGTGAAGCAGAATTATTT
GTTGGTGGGGAAATGGACAGGGTGGATTCAGAGGGATGACGGGATTGGAA
GTAAGGATGGAGCAGGGCCTGTGATGTACTTTACGGAAGGACAGCAGTGT
TGGAATGGGCCGAAGAGGACAGCTCTCGTGCAATTATGGTGTGGCCCGGA
GGAGGCGGTTGTAGAGGTGACGGAGCCGAGTGTGTGTTTGTATGACTTTG
TGATGACGACACCGTTGGTCTGCGATGAGGTGGTAGTGAAGGAGGCGGAA
GAGAGGCTGAGGAGGATGGGGGTAAAGTTGCCCGGAGATGATGCATGGGA
AGGGGTGGAGTTCCGGGAGGAGGGAGGGGGAGGTAGAATAGAAAGGGAGG
AATTGTGA
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protein sequence of NO08G01190.1

>NO08G01190.1-protein ID=NO08G01190.1-protein|Name=NO08G01190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=636bp
MISRFSLVAVAVAMAVALALLASPAAAAADASCPVSKARTNDDYCDDLVS
GCDETETSACSFIKRTPTFQCNASVTGEPHLLPASRVGDTVCDCCDGSDE
APGVCPDACGALQEEYLDNAFQWFEDVMAGKASRDAAVVEARGIMAGWEA
ELETVEAAHVELQQLLRKLKDLKAKEERMEGWENFWWLREEAKRRGEVLE
EEQAQQQPQEEQEEKCEEKAAAATTDESLVEEGDQDETTSDSSTSIPNAT
FDNDAAAAPLPASFTPARTVSVAFTEVGNQMGEVDNFEDRLLSATATDGT
LSLSLRTYLKTVASSSSYFSSPAASSKAATSVWEPTEILELNLQAMGALV
LGPFQAIFWMMSICKNELMDVLRINKHKTHHWSAADAAAAPATAVTTTAA
VAFEKGGWVGAMKWVVDAIARGPYTAMALLRPETIPNAPERMEAALLRFA
VEKVEGEVERKLGRMDELREALVETWYSAVKGDEGVFRTWKDKCFEKQDK
DFAYKICPFKEVKQNYLLVGKWTGWIQRDDGIGSKDGAGPVMYFTEGQQC
WNGPKRTALVQLWCGPEEAVVEVTEPSVCLYDFVMTTPLVCDEVVVKEAE
ERLRRMGVKLPGDDAWEGVEFREEGGGGRIEREEL*
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mRNA from alignment at chr8:370038..371945+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01190.1 ID=NO08G01190.1|Name=NO08G01190.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp|location=Sequence derived from alignment at chr8:370038..371945+ (Nannochloropsis oceanica)
ATGATCTCACGCTTCTCTCTCGTCGCCGTGGCCGTAGCAATGGCCGTGGC
ATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGATGCCTCTTGTC
CTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACGATCTGGTATCA
GGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATCAAACGAACTCC
CACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCATTTGCTGCCTG
CTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATGGCTCCGATGAG
GCGCCTGGCGTGTGCCCGGATGCATGCGGGGCACTGCAAGAAGAGTACCT
GGATAACGCCTTCCAATGGTTCGAGGACGTCATGGCCGGTAAAGCAAGTC
GGGATGCAGCTGTGGTGGAGGCACGGGGGATCATGGCGGGATGGGAGGCG
GAGCTGGAAACCGTAGAGGCTGCCCACGTAGAGCTTCAACAGTTGCTAAG
AAAGTTGAAGGATCTCAAGGCCAAGGAAGAAAGGATGGAGGGATGGGAGA
ATTTTTGGTGGTTACGCGAGGAGGCAAAGCGGAGGGGAGAAGTGCTGGAA
GAGGAGCAGGCGCAGCAGCAGCCGCAAGAGGAGCAGGAAGAGAAGTGCGA
GGAGAAGGCAGCCGCAGCGACAACGGATGAATCTCTTGTGGAAGAGGGCG
ACCAGGACGAGACTACGAGTGACTCCTCAACCTCGATACCCAACGCCACT
TTTGATAATGACGCCGCTGCTGCTCCATTGCCGGCCTCCTTCACTCCTGC
CCGCACAGTTTCCGTCGCGTTTACTGAAGTGGGCAACCAAATGGGAGAGG
TAGACAATTTCGAAGACCGCCTTCTCTCCGCCACCGCCACAGATGGCACG
CTCAGCTTATCACTACGAACATATCTGAAAACAGTCGCCTCTTCCTCCTC
CTACTTCTCCTCTCCCGCGGCATCGTCAAAAGCCGCCACCTCTGTCTGGG
AGCCAACCGAGATTCTAGAATTGAATCTACAGGCGATGGGTGCCCTGGTA
CTTGGGCCTTTTCAAGCCATCTTTTGGATGATGAGTATTTGCAAAAACGA
ATTGATGGACGTTCTGAGGATCAATAAGCACAAGACACACCACTGGAGTG
CTGCCGATGCTGCAGCTGCTCCTGCTACCGCTGTTACGACTACAGCTGCT
GTTGCGTTCGAAAAGGGCGGATGGGTAGGTGCGATGAAATGGGTGGTCGA
CGCGATTGCTCGTGGCCCGTATACGGCTATGGCTTTGCTTCGTCCTGAGA
CAATTCCTAATGCCCCTGAACGGATGGAGGCCGCCTTGTTAAGGTTTGCA
GTGGAGAAAGTGGAAGGGGAGGTTGAGAGGAAGTTAGGGCGGATGGACGA
GTTGAGAGAGGCCTTGGTTGAAACGTGGTATAGTGCAGTGAAAGGGGATG
AGGGGGTATTTCGTACGTGGAAGGACAAGTGCTTCGAGAAACAAGATAAG
GATTTTGCGTATAAAATTTGTCCTTTCAAGGAGGTGAAGCAGAATTATTT
GTTGGTGGGGAAATGGACAGGGTGGATTCAGAGGGATGACGGGATTGGAA
GTAAGGATGGAGCAGGGCCTGTGATGTACTTTACGGAAGGACAGCAGTGT
TGGAATGGGCCGAAGAGGACAGCTCTCGTGCAATTATGGTGTGGCCCGGA
GGAGGCGGTTGTAGAGGTGACGGAGCCGAGTGTGTGTTTGTATGACTTTG
TGATGACGACACCGTTGGTCTGCGATGAGGTGGTAGTGAAGGAGGCGGAA
GAGAGGCTGAGGAGGATGGGGGTAAAGTTGCCCGGAGATGATGCATGGGA
AGGGGTGGAGTTCCGGGAGGAGGGAGGGGGAGGTAGAATAGAAAGGGAGG
AATTGTGA
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Coding sequence (CDS) from alignment at chr8:370038..371945+

>NO08G01190.1 ID=NO08G01190.1|Name=NO08G01190.1|organism=Nannochloropsis oceanica|type=CDS|length=1908bp|location=Sequence derived from alignment at chr8:370038..371945+ (Nannochloropsis oceanica)
ATGATCTCACGCTTCTCTCTCGTCGCCGTGGCCGTAGCAATGGCCGTGGC
ATTGGCCTTGCTGGCCTCGCCCGCCGCGGCCGCAGCGGATGCCTCTTGTC
CTGTCTCCAAAGCCCGCACGAACGACGACTACTGTGACGATCTGGTATCA
GGATGCGACGAGACGGAGACTAGTGCCTGCTCCTTCATCAAACGAACTCC
CACTTTTCAATGCAACGCCTCCGTTACAGGCGAGCCGCATTTGCTGCCTG
CTTCCCGCGTGGGCGACACGGTTTGCGACTGCTGCGATGGCTCCGATGAG
GCGCCTGGCGTGTGCCCGGATGCATGCGGGGCACTGCAAGAAGAGTACCT
GGATAACGCCTTCCAATGGTTCGAGGACGTCATGGCCGGTAAAGCAAGTC
GGGATGCAGCTGTGGTGGAGGCACGGGGGATCATGGCGGGATGGGAGGCG
GAGCTGGAAACCGTAGAGGCTGCCCACGTAGAGCTTCAACAGTTGCTAAG
AAAGTTGAAGGATCTCAAGGCCAAGGAAGAAAGGATGGAGGGATGGGAGA
ATTTTTGGTGGTTACGCGAGGAGGCAAAGCGGAGGGGAGAAGTGCTGGAA
GAGGAGCAGGCGCAGCAGCAGCCGCAAGAGGAGCAGGAAGAGAAGTGCGA
GGAGAAGGCAGCCGCAGCGACAACGGATGAATCTCTTGTGGAAGAGGGCG
ACCAGGACGAGACTACGAGTGACTCCTCAACCTCGATACCCAACGCCACT
TTTGATAATGACGCCGCTGCTGCTCCATTGCCGGCCTCCTTCACTCCTGC
CCGCACAGTTTCCGTCGCGTTTACTGAAGTGGGCAACCAAATGGGAGAGG
TAGACAATTTCGAAGACCGCCTTCTCTCCGCCACCGCCACAGATGGCACG
CTCAGCTTATCACTACGAACATATCTGAAAACAGTCGCCTCTTCCTCCTC
CTACTTCTCCTCTCCCGCGGCATCGTCAAAAGCCGCCACCTCTGTCTGGG
AGCCAACCGAGATTCTAGAATTGAATCTACAGGCGATGGGTGCCCTGGTA
CTTGGGCCTTTTCAAGCCATCTTTTGGATGATGAGTATTTGCAAAAACGA
ATTGATGGACGTTCTGAGGATCAATAAGCACAAGACACACCACTGGAGTG
CTGCCGATGCTGCAGCTGCTCCTGCTACCGCTGTTACGACTACAGCTGCT
GTTGCGTTCGAAAAGGGCGGATGGGTAGGTGCGATGAAATGGGTGGTCGA
CGCGATTGCTCGTGGCCCGTATACGGCTATGGCTTTGCTTCGTCCTGAGA
CAATTCCTAATGCCCCTGAACGGATGGAGGCCGCCTTGTTAAGGTTTGCA
GTGGAGAAAGTGGAAGGGGAGGTTGAGAGGAAGTTAGGGCGGATGGACGA
GTTGAGAGAGGCCTTGGTTGAAACGTGGTATAGTGCAGTGAAAGGGGATG
AGGGGGTATTTCGTACGTGGAAGGACAAGTGCTTCGAGAAACAAGATAAG
GATTTTGCGTATAAAATTTGTCCTTTCAAGGAGGTGAAGCAGAATTATTT
GTTGGTGGGGAAATGGACAGGGTGGATTCAGAGGGATGACGGGATTGGAA
GTAAGGATGGAGCAGGGCCTGTGATGTACTTTACGGAAGGACAGCAGTGT
TGGAATGGGCCGAAGAGGACAGCTCTCGTGCAATTATGGTGTGGCCCGGA
GGAGGCGGTTGTAGAGGTGACGGAGCCGAGTGTGTGTTTGTATGACTTTG
TGATGACGACACCGTTGGTCTGCGATGAGGTGGTAGTGAAGGAGGCGGAA
GAGAGGCTGAGGAGGATGGGGGTAAAGTTGCCCGGAGATGATGCATGGGA
AGGGGTGGAGTTCCGGGAGGAGGGAGGGGGAGGTAGAATAGAAAGGGAGG
AATTGTGA
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Synonyms
Publications