|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr8 | genome | chr8:367585..369681 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01180.1 vs.
Match: EWM26621.1 (rna polymerase ii ctd phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 745.0 bits (1922), Expect = 2.200e-211 Identity = 423/735 (57.55%), Postives = 500/735 (68.03%), Query Frame = 0
Query: 1 MAKRRPRPASFLRDGSGGSGT---SNGSSRAYAVKALELDLETESLRPLAVSWVRRQGDRVKKDAELAQIICERLKGGGKVVRRLLATRTGTLTEIFMPDLSGTRQSATGVGKGNEGDIEDEDEQEMPLPPPRLVLGKMSYCTHPVLQSGRMCAVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTRKLNLILDIDLTLLHATIDPRAEHLHCGGLEVHAFDIFNQDRLLRHWCCLRPSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTEFEELNRVAGLAPAPLLDSGPAPPT-PVTTAAAGAAAVAMTVVTPTQESSGGCSNGKEDNSADDVATPPTQPPAPSLTLTAPASAAPTPSFSSSTSNPYGDPKEDRQLEHIWRVLQAVHALYY-----------------SDVKATTSSPNSTE---QAQEDGGRKEAQEEQPTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALSLGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHCERKDETGYLLPGCAKAAPQGTVTG-------------EPGDVLQHSESTSFMQEEDEEERDSEDQVEENKKQRASKRRRDEEIEEDEEGGEGVGEEGVGALLAAALEDELG 699
MAKRRPRP + +G+ G GT NG +RAY + LELDLE + LRPL VSW RRQGDRVK AELAQ+ICERL GGGKVVRRL A TG L E+ PDLSG R+ T VG+ EG E ++ +E PLPPPRLVLGK+ YCTHPVLQSGRMCAVCGEVL E G +EATRVFVQGG+HVSVS+ EAA ++R+MA+ L RKLNLILDIDLTLLHATIDPRAE L LEVHAFDIFNQ R+LRHWCCLRP LR+FL QAH+LYVLTIYTHGRRDYAHQVARLLDPDR+LF+DRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPV+PFKFYTEFEE+NRVAGLAPAP+L S PP+ P++ + + P+ S GKE ++ T P P++ +GDP+ED QLEH WRVL+AVHALYY S ++ + + E +A ++G +EA E+Q PP+NVA CL+++RR +LAGVTILFSGV+PRN DP RSDLGYMALSLGA+IV + + VTH+VAEN +TEKV+RA R+G + +V R WLQLSFFHC+RKDE G++LPGC Q G EPG Q ++ F + DE+ +R SKR + E E +G GE+ L AALEDELG
Sbjct: 1 MAKRRPRPTATSLNGTQGVGTCDNGNGGTRAYDTETLELDLEGQGLRPLTVSWGRRQGDRVKVGAELAQVICERLDGGGKVVRRLKAQHTGRLEEVVAPDLSGLRRPGTDVGR--EGP-EAKEPEERPLPPPRLVLGKLRYCTHPVLQSGRMCAVCGEVLSEGTGQAQEATRVFVQGGYHVSVSRTEAAFLHRSMAQKLRLARKLNLILDIDLTLLHATIDPRAERLDHQKLEVHAFDIFNQGRILRHWCCLRPHLRTFLSQAHALYVLTIYTHGRRDYAHQVARLLDPDRTLFEDRIVSRDDCPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVLPFKFYTEFEEVNRVAGLAPAPVLGSSAIPPSRPLSPPPSSPPTTTHSSPAPSGVS------GKETDAEAGRKGEKTPPVPPTV---------------------FGDPREDTQLEHTWRVLEAVHALYYPRGGKPDTEQGDGGAGGSIIEERGPASGNDELSLKAGKEGEGEEADEDQ--GVRPPQNVAGCLSSVRRQVLAGVTILFSGVLPRNVDPRRSDLGYMALSLGARIVEDFSPTVTHLVAENASTEKVFRARRQGGMWIVARTWLQLSFFHCDRKDEAGHVLPGCMSTVVQCRKKGVKETLPVFGGDGCEPGGESQEAKEQRFDNKSDED------------NERMSKRPKG--AAEKMEHADGDGEDATAEALVAALEDELG 689
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01180.1 ID=NO08G01180.1|Name=NO08G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
ATGGCAAAACGCAGGCCTCGTCCCGCATCTTTCCTGAGGGACGGCAGTGG
TGGCAGCGGCACCAGCAACGGGAGCAGCCGGGCGTACGCCGTCAAGGCGT
TGGAGCTGGACTTAGAGACAGAGAGTTTGCGGCCCTTGGCCGTGTCATGG
GTACGTCGGCAAGGGGACCGGGTGAAGAAGGATGCGGAACTCGCGCAGAT
CATTTGCGAGCGTCTGAAGGGCGGTGGGAAGGTTGTACGGAGGCTGTTGG
CAACTCGGACTGGCACCTTGACAGAAATCTTCATGCCGGACTTGAGCGGC
ACACGTCAGTCGGCCACAGGCGTGGGGAAGGGCAACGAAGGGGACATCGA
GGACGAGGACGAGCAGGAGATGCCATTGCCTCCACCTCGCTTGGTCTTGG
GAAAGATGAGCTACTGCACGCATCCAGTTTTACAAAGTGGACGCATGTGC
GCCGTGTGTGGGGAAGTGCTAGAAGAGGAAGCAGGCCACACAAAAGAAGC
CACGCGGGTCTTTGTTCAAGGCGGTCATCACGTCTCCGTCTCCAAACATG
AAGCTGCCAACATCTACCGAAACATGGCGGAAACCCTCACAAAAACTCGG
AAGCTTAACCTGATTCTTGACATTGACCTGACCCTGCTTCACGCCACCAT
CGATCCGCGCGCCGAGCACCTGCACTGCGGTGGGCTCGAGGTCCACGCCT
TCGACATTTTCAACCAAGACCGCCTCCTCCGTCACTGGTGCTGCCTCCGC
CCGTCCCTCCGCTCCTTCCTCCTCCAAGCCCACTCCCTCTACGTCCTCAC
TATATACACCCACGGCCGTCGAGACTACGCACATCAGGTTGCACGTCTCC
TCGACCCTGACCGGTCTCTCTTTAAGGATCGAATCGTCTCCCGCGACGAC
TGCCCAGACCTCCACGGTCAAAAATCCCTCCAACGGCTTTTCCCCGGAGG
GATTGAAATGGCATTGATTCTTGACGACTCCCCCCAGGTGTGGCAAGGGG
AGCAATCGAGGCACCTACTACCAGTCGTCCCTTTCAAGTTTTATACTGAA
TTTGAAGAGCTTAACCGAGTGGCAGGTCTCGCACCTGCTCCACTCTTGGA
TTCTGGCCCGGCACCTCCAACACCGGTGACAACAGCGGCAGCAGGAGCAG
CAGCTGTTGCGATGACGGTAGTGACGCCCACCCAGGAAAGCAGCGGTGGC
TGCAGCAACGGTAAAGAAGACAACAGTGCTGACGACGTGGCCACACCACC
CACCCAGCCACCAGCTCCATCATTGACATTGACAGCACCAGCATCAGCAG
CACCCACCCCTTCCTTTTCCTCCTCGACCTCGAATCCCTATGGCGATCCT
AAGGAAGACAGACAACTTGAACACATCTGGCGGGTCCTGCAAGCCGTGCA
TGCCCTGTACTACAGTGACGTAAAAGCCACCACCAGTTCTCCCAACAGTA
CAGAACAGGCACAGGAAGATGGAGGGAGGAAGGAAGCGCAAGAGGAGCAG
CCAACCTCCACAGCTCCCCCAAAAAATGTCGCTCAATGTCTCAACACCAT
CCGTCGTAGCATCTTAGCAGGTGTCACCATCCTCTTCAGTGGTGTCGTGC
CTCGTAATACGGATCCATTTCGAAGTGATTTAGGATACATGGCCCTGTCA
TTAGGCGCAAAAATTGTCCCAGAGCTAACAGAGGTAGTCACGCATGTAGT
CGCCGAGAACCCCAACACGGAAAAAGTGTATCGGGCGAGTCGAAGAGGCG
ATGTTTTGGTAGTGACGAGGGTTTGGTTGCAATTGTCGTTTTTTCATTGT
GAGCGCAAGGACGAGACTGGGTATTTGTTGCCCGGGTGCGCCAAGGCGGC
CCCGCAAGGGACAGTGACTGGAGAGCCAGGAGACGTGTTGCAGCACTCGG
AGTCGACAAGTTTCATGCAGGAAGAAGACGAGGAAGAGAGAGACAGTGAG
GATCAGGTAGAAGAAAATAAAAAGCAACGGGCCAGTAAACGGCGAAGGGA
TGAGGAGATAGAGGAGGACGAGGAGGGTGGGGAGGGGGTAGGGGAAGAGG
GGGTGGGTGCTCTATTGGCGGCGGCTTTGGAGGATGAATTGGGCTGA back to topprotein sequence of NO08G01180.1 >NO08G01180.1-protein ID=NO08G01180.1-protein|Name=NO08G01180.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MAKRRPRPASFLRDGSGGSGTSNGSSRAYAVKALELDLETESLRPLAVSW
VRRQGDRVKKDAELAQIICERLKGGGKVVRRLLATRTGTLTEIFMPDLSG
TRQSATGVGKGNEGDIEDEDEQEMPLPPPRLVLGKMSYCTHPVLQSGRMC
AVCGEVLEEEAGHTKEATRVFVQGGHHVSVSKHEAANIYRNMAETLTKTR
KLNLILDIDLTLLHATIDPRAEHLHCGGLEVHAFDIFNQDRLLRHWCCLR
PSLRSFLLQAHSLYVLTIYTHGRRDYAHQVARLLDPDRSLFKDRIVSRDD
CPDLHGQKSLQRLFPGGIEMALILDDSPQVWQGEQSRHLLPVVPFKFYTE
FEELNRVAGLAPAPLLDSGPAPPTPVTTAAAGAAAVAMTVVTPTQESSGG
CSNGKEDNSADDVATPPTQPPAPSLTLTAPASAAPTPSFSSSTSNPYGDP
KEDRQLEHIWRVLQAVHALYYSDVKATTSSPNSTEQAQEDGGRKEAQEEQ
PTSTAPPKNVAQCLNTIRRSILAGVTILFSGVVPRNTDPFRSDLGYMALS
LGAKIVPELTEVVTHVVAENPNTEKVYRASRRGDVLVVTRVWLQLSFFHC
ERKDETGYLLPGCAKAAPQGTVTGEPGDVLQHSESTSFMQEEDEEERDSE
DQVEENKKQRASKRRRDEEIEEDEEGGEGVGEEGVGALLAAALEDELG* back to topmRNA from alignment at chr8:367585..369681- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01180.1 ID=NO08G01180.1|Name=NO08G01180.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp|location=Sequence derived from alignment at chr8:367585..369681- (Nannochloropsis oceanica)
ATGGCAAAACGCAGGCCTCGTCCCGCATCTTTCCTGAGGGACGGCAGTGG
TGGCAGCGGCACCAGCAACGGGAGCAGCCGGGCGTACGCCGTCAAGGCGT
TGGAGCTGGACTTAGAGACAGAGAGTTTGCGGCCCTTGGCCGTGTCATGG
GTACGTCGGCAAGGGGACCGGGTGAAGAAGGATGCGGAACTCGCGCAGAT
CATTTGCGAGCGTCTGAAGGGCGGTGGGAAGGTTGTACGGAGGCTGTTGG
CAACTCGGACTGGCACCTTGACAGAAATCTTCATGCCGGACTTGAGCGGC
ACACGTCAGTCGGCCACAGGCGTGGGGAAGGGCAACGAAGGGGACATCGA
GGACGAGGACGAGCAGGAGATGCCATTGCCTCCACCTCGCTTGGTCTTGG
GAAAGATGAGCTACTGCACGCATCCAGTTTTACAAAGTGGACGCATGTGC
GCCGTGTGTGGGGAAGTGCTAGAAGAGGAAGCAGGCCACACAAAAGAAGC
CACGCGGGTCTTTGTTCAAGGCGGTCATCACGTCTCCGTCTCCAAACATG
AAGCTGCCAACATCTACCGAAACATGGCGGAAACCCTCACAAAAACTCGG
AAGCTTAACCTGATTCTTGACATTGACCTGACCCTGCTTCACGCCACCAT
CGATCCGCGCGCCGAGCACCTGCACTGCGGTGGGCTCGAGGTCCACGCCT
TCGACATTTTCAACCAAGACCGCCTCCTCCGTCACTGGTGCTGCCTCCGC
CCGTCCCTCCGCTCCTTCCTCCTCCAAGCCCACTCCCTCTACGTCCTCAC
TATATACACCCACGGCCGTCGAGACTACGCACATCAGGTTGCACGTCTCC
TCGACCCTGACCGGTCTCTCTTTAAGGATCGAATCGTCTCCCGCGACGAC
TGCCCAGACCTCCACGGTCAAAAATCCCTCCAACGGCTTTTCCCCGGAGG
GATTGAAATGGCATTGATTCTTGACGACTCCCCCCAGGTGTGGCAAGGGG
AGCAATCGAGGCACCTACTACCAGTCGTCCCTTTCAAGTTTTATACTGAA
TTTGAAGAGCTTAACCGAGTGGCAGGTCTCGCACCTGCTCCACTCTTGGA
TTCTGGCCCGGCACCTCCAACACCGGTGACAACAGCGGCAGCAGGAGCAG
CAGCTGTTGCGATGACGGTAGTGACGCCCACCCAGGAAAGCAGCGGTGGC
TGCAGCAACGGTAAAGAAGACAACAGTGCTGACGACGTGGCCACACCACC
CACCCAGCCACCAGCTCCATCATTGACATTGACAGCACCAGCATCAGCAG
CACCCACCCCTTCCTTTTCCTCCTCGACCTCGAATCCCTATGGCGATCCT
AAGGAAGACAGACAACTTGAACACATCTGGCGGGTCCTGCAAGCCGTGCA
TGCCCTGTACTACAGTGACGTAAAAGCCACCACCAGTTCTCCCAACAGTA
CAGAACAGGCACAGGAAGATGGAGGGAGGAAGGAAGCGCAAGAGGAGCAG
CCAACCTCCACAGCTCCCCCAAAAAATGTCGCTCAATGTCTCAACACCAT
CCGTCGTAGCATCTTAGCAGGTGTCACCATCCTCTTCAGTGGTGTCGTGC
CTCGTAATACGGATCCATTTCGAAGTGATTTAGGATACATGGCCCTGTCA
TTAGGCGCAAAAATTGTCCCAGAGCTAACAGAGGTAGTCACGCATGTAGT
CGCCGAGAACCCCAACACGGAAAAAGTGTATCGGGCGAGTCGAAGAGGCG
ATGTTTTGGTAGTGACGAGGGTTTGGTTGCAATTGTCGTTTTTTCATTGT
GAGCGCAAGGACGAGACTGGGTATTTGTTGCCCGGGTGCGCCAAGGCGGC
CCCGCAAGGGACAGTGACTGGAGAGCCAGGAGACGTGTTGCAGCACTCGG
AGTCGACAAGTTTCATGCAGGAAGAAGACGAGGAAGAGAGAGACAGTGAG
GATCAGGTAGAAGAAAATAAAAAGCAACGGGCCAGTAAACGGCGAAGGGA
TGAGGAGATAGAGGAGGACGAGGAGGGTGGGGAGGGGGTAGGGGAAGAGG
GGGTGGGTGCTCTATTGGCGGCGGCTTTGGAGGATGAATTGGGCTGA back to topCoding sequence (CDS) from alignment at chr8:367585..369681- >NO08G01180.1 ID=NO08G01180.1|Name=NO08G01180.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr8:367585..369681- (Nannochloropsis oceanica)
ATGGCAAAACGCAGGCCTCGTCCCGCATCTTTCCTGAGGGACGGCAGTGG
TGGCAGCGGCACCAGCAACGGGAGCAGCCGGGCGTACGCCGTCAAGGCGT
TGGAGCTGGACTTAGAGACAGAGAGTTTGCGGCCCTTGGCCGTGTCATGG
GTACGTCGGCAAGGGGACCGGGTGAAGAAGGATGCGGAACTCGCGCAGAT
CATTTGCGAGCGTCTGAAGGGCGGTGGGAAGGTTGTACGGAGGCTGTTGG
CAACTCGGACTGGCACCTTGACAGAAATCTTCATGCCGGACTTGAGCGGC
ACACGTCAGTCGGCCACAGGCGTGGGGAAGGGCAACGAAGGGGACATCGA
GGACGAGGACGAGCAGGAGATGCCATTGCCTCCACCTCGCTTGGTCTTGG
GAAAGATGAGCTACTGCACGCATCCAGTTTTACAAAGTGGACGCATGTGC
GCCGTGTGTGGGGAAGTGCTAGAAGAGGAAGCAGGCCACACAAAAGAAGC
CACGCGGGTCTTTGTTCAAGGCGGTCATCACGTCTCCGTCTCCAAACATG
AAGCTGCCAACATCTACCGAAACATGGCGGAAACCCTCACAAAAACTCGG
AAGCTTAACCTGATTCTTGACATTGACCTGACCCTGCTTCACGCCACCAT
CGATCCGCGCGCCGAGCACCTGCACTGCGGTGGGCTCGAGGTCCACGCCT
TCGACATTTTCAACCAAGACCGCCTCCTCCGTCACTGGTGCTGCCTCCGC
CCGTCCCTCCGCTCCTTCCTCCTCCAAGCCCACTCCCTCTACGTCCTCAC
TATATACACCCACGGCCGTCGAGACTACGCACATCAGGTTGCACGTCTCC
TCGACCCTGACCGGTCTCTCTTTAAGGATCGAATCGTCTCCCGCGACGAC
TGCCCAGACCTCCACGGTCAAAAATCCCTCCAACGGCTTTTCCCCGGAGG
GATTGAAATGGCATTGATTCTTGACGACTCCCCCCAGGTGTGGCAAGGGG
AGCAATCGAGGCACCTACTACCAGTCGTCCCTTTCAAGTTTTATACTGAA
TTTGAAGAGCTTAACCGAGTGGCAGGTCTCGCACCTGCTCCACTCTTGGA
TTCTGGCCCGGCACCTCCAACACCGGTGACAACAGCGGCAGCAGGAGCAG
CAGCTGTTGCGATGACGGTAGTGACGCCCACCCAGGAAAGCAGCGGTGGC
TGCAGCAACGGTAAAGAAGACAACAGTGCTGACGACGTGGCCACACCACC
CACCCAGCCACCAGCTCCATCATTGACATTGACAGCACCAGCATCAGCAG
CACCCACCCCTTCCTTTTCCTCCTCGACCTCGAATCCCTATGGCGATCCT
AAGGAAGACAGACAACTTGAACACATCTGGCGGGTCCTGCAAGCCGTGCA
TGCCCTGTACTACAGTGACGTAAAAGCCACCACCAGTTCTCCCAACAGTA
CAGAACAGGCACAGGAAGATGGAGGGAGGAAGGAAGCGCAAGAGGAGCAG
CCAACCTCCACAGCTCCCCCAAAAAATGTCGCTCAATGTCTCAACACCAT
CCGTCGTAGCATCTTAGCAGGTGTCACCATCCTCTTCAGTGGTGTCGTGC
CTCGTAATACGGATCCATTTCGAAGTGATTTAGGATACATGGCCCTGTCA
TTAGGCGCAAAAATTGTCCCAGAGCTAACAGAGGTAGTCACGCATGTAGT
CGCCGAGAACCCCAACACGGAAAAAGTGTATCGGGCGAGTCGAAGAGGCG
ATGTTTTGGTAGTGACGAGGGTTTGGTTGCAATTGTCGTTTTTTCATTGT
GAGCGCAAGGACGAGACTGGGTATTTGTTGCCCGGGTGCGCCAAGGCGGC
CCCGCAAGGGACAGTGACTGGAGAGCCAGGAGACGTGTTGCAGCACTCGG
AGTCGACAAGTTTCATGCAGGAAGAAGACGAGGAAGAGAGAGACAGTGAG
GATCAGGTAGAAGAAAATAAAAAGCAACGGGCCAGTAAACGGCGAAGGGA
TGAGGAGATAGAGGAGGACGAGGAGGGTGGGGAGGGGGTAGGGGAAGAGG
GGGTGGGTGCTCTATTGGCGGCGGCTTTGGAGGATGAATTGGGCTGA back to top
|