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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:340050..343506 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G01080.4 vs.
Match: EWM26589.1 (magnesium and cobalt transport protein [Nannochloropsis gaditana]) HSP 1 Score: 589.3 bits (1518), Expect = 1.100e-164 Identity = 329/469 (70.15%), Postives = 354/469 (75.48%), Query Frame = 0
Query: 1 MEIVKFSSVDYNEKRYAAEIPVADTYAFFTAHRDPKDFMMRWLHLEGIDRLTILRFAVKYSLHPLCVEDALKLEDQQPKVNKYGSHYFIVMPFFRLARESREALDALRQQRRRNTGIIKSTAEAAAALA----GARREEGREG-GKCNRKGKKPAGIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLWGEGG---------------------AARAPVGR-----GRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIARDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHIFENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQAHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGHDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLR 439
ME+VKFSS+DYNEK Y+AEIPVADTYAFFT HRDPKDFMMRWLHLEG+DRLTILRFA+KYSLHPLCVEDALKLEDQQPKVNKYG HYFIVMPFFRL RESREAL LRQQRRR + IIKSTAEAAA LA G R G +G G+ + ++ G E WSDFHF+VEWSKLCIFMAG PSYDT+ISLH KWETFN+ETDEML GE G A+ A G G GLR RRGGGRE G + SGE+GLI D +AASHY HH + G T+ P +G GG SS S +GHIFE LV ALKVDYS LRQGNSKHLLYRILDE VD+L+PIA+AYRTRVRLFQA LHRNES F KE MRLVLGMKSELQRLQRRIRPM AVVRHLMDDEQIG DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLR
Sbjct: 323 MEVVKFSSLDYNEKTYSAEIPVADTYAFFTTHRDPKDFMMRWLHLEGLDRLTILRFAIKYSLHPLCVEDALKLEDQQPKVNKYGCHYFIVMPFFRLTRESREALKTLRQQRRRYSSIIKSTAEAAALLAHGATGQRERGGLQGSGQASPNDRRHKG-KESWSDFHFRVEWSKLCIFMAGAPSYDTLISLHGKWETFNSETDEMLRGEEGPGGKKGAGEEWKGMGSRTESSASMAKGGNSSFVGGSASTHGLRFRRGGGREAG--------DLDSGEDGLIKDDSMAASHYEHHVRYGWDGQESGSTS--PYSGVGGANSSFS-----QGHIFERLVTALKVDYSTLRQGNSKHLLYRILDEVVDFLIPIAQAYRTRVRLFQAQLHRNESTFKKEHMRLVLGMKSELQRLQRRIRPMTAVVRHLMDDEQIGQDMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLR 775
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G01080.4 ID=NO08G01080.4|Name=NO08G01080.4|organism=Nannochloropsis oceanica|type=mRNA|length=2740bp
ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT
GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT
TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG
AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA
CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG
AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA
GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG
TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC
ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTTGACCATCCTTCG
TTTTGCGGTCAAGTACTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCA
AGCTCGAGGACCAGCAGCCCAAGGTGAACAAATACGGCTCCCACTACTTC
ATAGTCATGCCTTTCTTCCGGTTGGCGAGGGAGAGTCGGGAGGCGCTTGA
CGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGATTATCAAAAGCACTG
CTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGGAGGAAGGAAGGGAG
GGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCGGGCATAGGGGAGGG
ATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAAGTTGTGTATTTTCA
TGGCCGGTCGTCCCAGCTACGACACCATTATCTCCCTGCACAGCAAGTGG
GAGACGTTCAACAACGAGACGGACGAGATGCTCTGGGGGGAGGGAGGGGC
GGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGCGGAGGGATTGCGTT
CGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATGTGTCAAGTAGTAGC
ACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCAAGAGATTTTGTGGC
AGCTTCGCATTACCACCATCATCATAACAATCATTACTTTCACCCTTACG
GTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCGGAGGCTGTCCGTCC
TCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATCTTTGAGAATCTGGT
TGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACAAGGGAACAGCAAGC
ACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACTATTTATTGCCCATT
GCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAGGCTCACTTGCATCG
GAACGAGAGCAAGTTCACCAAGGAACAAATGCGCTTGGTCCTGGGCATGA
AGAGCGAGCTACAGCGGCTGCAGCGACGCATCCGACCCATGAAAGCGGTG
GTGCGGCACCTGATGGATGATGAACAGATAGGGCACGACATGAAAGTGTA
CTTGGAAGACGTGCTGGACCACGTGGTGAGGGGGCTGGAGGAGATCGGTG
GGTGCATCGAAATGTGCGACTCGACAAAGGAGGAGTTCAAGAGCTTGCGG
GTAAGGACGGATGGGAGGAGGGGAGGAGGGTGGAGGATGTATGTGCGTGT
GCATCAGTGGTTGGGCAATTTTCCAGATAATGTCGTGCGGGGCTTGGTGG
GGGGAGGGTATACTGAGAGAGATGTGGCTCGAGGAAGAGTTTTCGGCTAC
GGTTACGTCCTTCATACTTTCCTTCCTCCTACGCTCCTTTCCTCCCTCAA
TGAATTGAATGTTTTCGCTTTCATCATCCCTCCCTCCTGACACCATCTCC
TTTCCTCCCTTTATACTGACTGCTCACGCCATGGCTAGGACCAACGGACA
AACGAGGTGCTCTACACGCTGACGGTGGTGACGACCATGTTTGTGCCCCT
CCAGTTTCTAACTGGAGTGTATGGGGTACGTGCCTGAAGGAATGATGGAG
GACGGGAGGGCTAGAAAGAGAGACTTTTCCTTCCCTTCCCATGGCCAACC
CACACGCTTACCACGTCCCTCCCTCCCTGTCTCTTCCACGCTCGCTTCGT
ATTGAACCAAATAGATGAATTTCGTCAATGCTGAAGGGCATCCGACCATG
CCGGAGCTGCTATGGCCCCGGGGCTATCTGTTCTTTTGGTGCATGGCCGC
GACTCTTTTTTCCGTCTCCTTGTACTTTTTCAGGACGCACCTGTCTTACT
CTTGAGCGGGGGGAAAACGGGGGCAGTGAGGGAGGGAGGGAATATAGCAC
GGATACCTCTTGTTTCCTTGATGCCCTTTGATCTTTAGGATGTAAATTAT
GGAAGGGAAGGGGGAGGGGAGGGAGATACCTAAACGAGGTAAGGGAGGAG
AACATTTATTTTTACAAATGACGGTTCGCAGGGATTGTAGACGGCCGCTG
GAGGGGGACCGGCGAGAAAGCGAGAAAGAGAAAGAGAGAAAGACTTGGTC
GAGGAAGAAGTGTGAAAGCGAAAAATACATGCATTTGGGCGGCAAGCTAA
GTAAGACACTGCCTACCTTCACATGCAACGGTCGAAAGAAAAATGAAGGA
GCAGGACGGGGGAAATACGTTACACGTGATCACAGGCATAGGCGGTCAAA
AGTGGGGACTTCCGTGAGGCTAAGGATCAGCTTTCAAGATGGGGGGATCA
AAAGCAAAAAGCGCGAACAAAGCACCAGTAGCAATTCGAG back to topprotein sequence of NO08G01080.4 >NO08G01080.4-protein ID=NO08G01080.4-protein|Name=NO08G01080.4|organism=Nannochloropsis oceanica|type=polypeptide|length=518bp
MEIVKFSSVDYNEKRYAAEIPVADTYAFFTAHRDPKDFMMRWLHLEGIDR
LTILRFAVKYSLHPLCVEDALKLEDQQPKVNKYGSHYFIVMPFFRLARES
REALDALRQQRRRNTGIIKSTAEAAAALAGARREEGREGGKCNRKGKKPA
GIGEGWSDFHFKVEWSKLCIFMAGRPSYDTIISLHSKWETFNNETDEMLW
GEGGAARAPVGRGRGEAEGLRSRRGGGREGGRDVSSSSTNSSSGEEGLIA
RDFVAASHYHHHHNNHYFHPYGGCTAIPPSNGCGGCPSSSSSSSSPRGHI
FENLVAALKVDYSVLRQGNSKHLLYRILDEAVDYLLPIARAYRTRVRLFQ
AHLHRNESKFTKEQMRLVLGMKSELQRLQRRIRPMKAVVRHLMDDEQIGH
DMKVYLEDVLDHVVRGLEEIGGCIEMCDSTKEEFKSLRVRTDGRRGGGWR
MYVRVHQWLGNFPDNVVRGLVGGGYTERDVARGRVFGYGYVLHTFLPPTL
LSSLNELNVFAFIIPPS* back to topmRNA from alignment at chr8:340050..343506+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G01080.4 ID=NO08G01080.4|Name=NO08G01080.4|organism=Nannochloropsis oceanica|type=mRNA|length=3457bp|location=Sequence derived from alignment at chr8:340050..343506+ (Nannochloropsis oceanica)
ACGGGGCAAGGAGTGAGCGAGTCTATTATGGTGGCACCGGCGCCCAGATT
GCTGTCGGGATTGGGGGGGGGGATCACACGTGTAGTAATGATATGTGTGT
TACCTTGGGAGGAGGAGGGCTAGCAGGAGGGGCAGGAGCAGGGGGGAGGG
AGGGGAGGGAGGGCGGATAACGCCGGGGTTGCCCTACCCTGATTACGGAA
CTGCAACTCCTGCTTATTTGCCGATAGATGGCCAAGAAGAGGAGGGAGGG
AGGGAGGGAAGGAGGGAAAGGGGAGGCAATGGTCGGATGGAGATAGTGAA
GTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGCCGCCGAGATTCCTG
TGGCGGACACGTACGCGTTCTTCACGGCCCATCGAGACCCCAAGGACTTC
ATGATGCGCTGGCTACACTTGGAGGGGATCGATAGGTACGTCATTTGTAC
CTTCCCTTGTCCCCCCCTCCCCCCTCCCGACCCGTTTCTCTTCCGCCTTT
CTTTCCAGTCGGACGTGTATATTTTCTTTCATTCCCACACATCACTTTGA
ATGAGGGATCTTCTGATGCGGCTTTCGTTACCGAATGTCTGTCAATATTC
TCAACCCTTCCTTCCTGCCTTCCTCACCCCCTCCCTCCCCCTCTTTCCCT
CCTCACACCACCACCCGCAGGTTGACCATCCTTCGTTTTGCGGTCAAGTA
CTCTCTCCACCCTCTCTGTGTCGAAGACGCCCTCAAGCTCGAGGACCAGC
AGCCCAAGGTGAACAAATACGGCTCCCACTACTTCATAGTCATGCCTTTC
TTCCGGTTGGCGAGGGAGAGTCGGGAGGTATATTGCGAACGGGGGGGGAG
GAAGGAAGGGAGGGAGGGAGGAAGCGAGGGAGAGAATAAGATTGCATGCA
TTCATATATATATCCCTGTTTCCTGATATTGAAGGGCCTTATTCTAAGAA
GCATGACCAGCGCGGTTGCCTCGCGGATGCCCCACCGCCAGCCAACTCCT
CCCCCTCTCCCTCCCTCCCTCTTGCCCTCCCTCCCTCCCTCCCTCTTCCA
GGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGATTATCA
AAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGGAGGAA
GGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCGGGCAT
AGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAAGTTGT
GTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCCTGCAC
AGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGGGGGGA
GGGAGGGGGTGGGGAGTGGGAGGGAGGAAGGGACGGAGAGGTTGGTAGAG
GAAGGGGAAGGAGGGGGGGATGGGGAGTCGGTCGGCAAGCACGGCATCCT
TGTCGGCGGCAGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGCG
GAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATGT
GTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCAA
GAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTAC
TTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCGG
AGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATCT
TTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACAA
GGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACTA
TTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAGG
CTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGTGAGCCCATGCAAG
ACATTCCCTCCTTCGTTCCCTCCCTCCGCCTCTTCCTTCACAAGAACACT
CCTCATGATAGTCTGGATTCAACATCTTGTCAAAGCGCTGTCCGACTGCT
TTCTCTCAACCCTCCCTCCCTCTCTCCCTCCCCTCGTAGGAACAAATGCG
CTTGGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCC
GACCCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGG
CACGACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGG
GCTGGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGG
AGTTCAAGAGCTTGCGGGTAAGGACGGATGGGAGGAGGGGAGGAGGGTGG
AGGATGTATGTGCGTGTGCATCAGTGGTTGGGCAATTTTCCAGATAATGT
CGTGCGGGGCTTGGTGGGGGGAGGGTATACTGAGAGAGATGTGGCTCGAG
GAAGAGTTTTCGGCTACGGTTACGTCCTTCATACTTTCCTTCCTCCTACG
CTCCTTTCCTCCCTCAATGAATTGAATGTTTTCGCTTTCATCATCCCTCC
CTCCTGACACCATCTCCTTTCCTCCCTTTATACTGACTGCTCACGCCATG
GCTAGGACCAACGGACAAACGAGGTGCTCTACACGCTGACGGTGGTGACG
ACCATGTTTGTGCCCCTCCAGTTTCTAACTGGAGTGTATGGGGTACGTGC
CTGAAGGAATGATGGAGGACGGGAGGGCTAGAAAGAGAGACTTTTCCTTC
CCTTCCCATGGCCAACCCACACGCTTACCACGTCCCTCCCTCCCTGTCTC
TTCCACGCTCGCTTCGTATTGAACCAAATAGATGAATTTCGTCAATGCTG
AAGGGCATCCGACCATGCCGGAGCTGCTATGGCCCCGGGGCTATCTGTTC
TTTTGGTGCATGGCCGCGACTCTTTTTTCCGTCTCCTTGTACTTTTTCAG
GACGCACCTGTCTTACTCTTGAGCGGGGGGAAAACGGGGGCAGTGAGGGA
GGGAGGGAATATAGCACGGATACCTCTTGTTTCCTTGATGCCCTTTGATC
TTTAGGATGTAAATTATGGAAGGGAAGGGGGAGGGGAGGGAGATACCTAA
ACGAGGTAAGGGAGGAGAACATTTATTTTTACAAATGACGGTTCGCAGGG
ATTGTAGACGGCCGCTGGAGGGGGACCGGCGAGAAAGCGAGAAAGAGAAA
GAGAGAAAGACTTGGTCGAGGAAGAAGTGTGAAAGCGAAAAATACATGCA
TTTGGGCGGCAAGCTAAGTAAGACACTGCCTACCTTCACATGCAACGGTC
GAAAGAAAAATGAAGGAGCAGGACGGGGGAAATACGTTACACGTGATCAC
AGGCATAGGCGGTCAAAAGTGGGGACTTCCGTGAGGCTAAGGATCAGCTT
TCAAGATGGGGGGATCAAAAGCAAAAAGCGCGAACAAAGCACCAGTAGCA
ATTCGAG back to topCoding sequence (CDS) from alignment at chr8:340050..343506+ >NO08G01080.4 ID=NO08G01080.4|Name=NO08G01080.4|organism=Nannochloropsis oceanica|type=CDS|length=1554bp|location=Sequence derived from alignment at chr8:340050..343506+ (Nannochloropsis oceanica)
ATGGAGATAGTGAAGTTCTCAAGCGTGGACTACAACGAGAAGAGGTATGC
CGCCGAGATTCCTGTGGCGGACACGTACGCGTTCTTCACGGCCCATCGAG
ACCCCAAGGACTTCATGATGCGCTGGCTACACTTGGAGGGGATCGATAGG
TTGACCATCCTTCGTTTTGCGGTCAAGTACTCTCTCCACCCTCTCTGTGT
CGAAGACGCCCTCAAGCTCGAGGACCAGCAGCCCAAGGTGAACAAATACG
GCTCCCACTACTTCATAGTCATGCCTTTCTTCCGGTTGGCGAGGGAGAGT
CGGGAGGCGCTTGACGCCCTGCGGCAGCAGCGACGTCGTAACACGGGGAT
TATCAAAAGCACTGCTGAAGCCGCCGCGGCTTTAGCGGGGGCTCGGCGGG
AGGAAGGAAGGGAGGGAGGAAAGTGTAATCGAAAGGGGAAGAAGCCGGCG
GGCATAGGGGAGGGATGGTCCGATTTCCACTTTAAGGTCGAATGGTCCAA
GTTGTGTATTTTCATGGCCGGTCGTCCCAGCTACGACACCATTATCTCCC
TGCACAGCAAGTGGGAGACGTTCAACAACGAGACGGACGAGATGCTCTGG
GGGGAGGGAGGGGCGGCCAGGGCGCCAGTGGGGAGAGGGAGGGGAGAAGC
GGAGGGATTGCGTTCGAGAAGGGGAGGAGGAAGGGAGGGAGGGAGGGATG
TGTCAAGTAGTAGCACGAACAGCAGCAGTGGGGAGGAAGGGCTGATTGCA
AGAGATTTTGTGGCAGCTTCGCATTACCACCATCATCATAACAATCATTA
CTTTCACCCTTACGGTGGGTGTACGGCCATTCCCCCCTCCAACGGTTGCG
GAGGCTGTCCGTCCTCCTCCTCCTCTTCCTCCTCCCCCCGAGGACATATC
TTTGAGAATCTGGTTGCGGCTCTCAAGGTTGACTACTCGGTCTTGCGACA
AGGGAACAGCAAGCACCTGCTCTATCGCATCTTGGATGAGGCAGTGGACT
ATTTATTGCCCATTGCCCGCGCGTACCGAACGAGGGTCCGATTATTTCAG
GCTCACTTGCATCGGAACGAGAGCAAGTTCACCAAGGAACAAATGCGCTT
GGTCCTGGGCATGAAGAGCGAGCTACAGCGGCTGCAGCGACGCATCCGAC
CCATGAAAGCGGTGGTGCGGCACCTGATGGATGATGAACAGATAGGGCAC
GACATGAAAGTGTACTTGGAAGACGTGCTGGACCACGTGGTGAGGGGGCT
GGAGGAGATCGGTGGGTGCATCGAAATGTGCGACTCGACAAAGGAGGAGT
TCAAGAGCTTGCGGGTAAGGACGGATGGGAGGAGGGGAGGAGGGTGGAGG
ATGTATGTGCGTGTGCATCAGTGGTTGGGCAATTTTCCAGATAATGTCGT
GCGGGGCTTGGTGGGGGGAGGGTATACTGAGAGAGATGTGGCTCGAGGAA
GAGTTTTCGGCTACGGTTACGTCCTTCATACTTTCCTTCCTCCTACGCTC
CTTTCCTCCCTCAATGAATTGAATGTTTTCGCTTTCATCATCCCTCCCTC
CTGA back to top
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