NO08G01040.1, NO08G01040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G01040.1
Unique NameNO08G01040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length732
Alignment locationchr8:331546..332277 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:331546..332277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G01040.1 vs.
Match: EWM26651.1 (Peroxiredoxin-like protein [Nannochloropsis gaditana])

HSP 1 Score: 369.8 bits (948), Expect = 6.600e-99
Identity = 187/240 (77.92%), Postives = 211/240 (87.92%), Query Frame = 0
Query:   11 MPFHLITKVHLTQLLAVSTILSGTTFIGVRAFAKPA------TMSASTSTKPS-STSSAQSLFPIPLRKVTGEAAALGASVPCSSLIKPNGAVIFVVRRPGCILCREEAMDLSTQLAPRLKGLKKQPRLMAVVAETTSVDGFVEAFKGLDTFLDEGRMFQKFLGDRWLGVQGMLYPSVWRNGSRATKKYPTLEGDLKGEGRRLGGLLVVDGKGDVVYQYNEKVFGDHAPMDEVFEAASKL 244
            MP  L TK HLTQ LAV T+LSGTT +GVRAFA PA       MSAST+ +PS STS+A +LFPIPLRKVTGEAAALG ++   +LIKP+GAVIFVVRRPGCILCREEAMDLSTQLAPRLKG+KK+P+LMAVVAETTSVDGF+EAFKG DT+LDE R FQKFLGDRWLG++GM YPSVW+NGSRA KKYP LEGDLKGEGRRLGGL+VVDG+G+VVYQYNEKVFGDHAP++EV+ AASKL
Sbjct:    1 MPVRLFTKTHLTQFLAVGTLLSGTTLVGVRAFASPAGHPTTTRMSASTTGRPSTSTSTASTLFPIPLRKVTGEAAALGGAIRAENLIKPDGAVIFVVRRPGCILCREEAMDLSTQLAPRLKGIKKKPKLMAVVAETTSVDGFLEAFKGFDTYLDEERSFQKFLGDRWLGLKGMFYPSVWKNGSRAQKKYPGLEGDLKGEGRRLGGLVVVDGQGEVVYQYNEKVFGDHAPLEEVYSAASKL 240          
The following BLAST results are available for this feature:
BLAST of NO08G01040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26651.16.600e-9977.92Peroxiredoxin-like protein [Nannochloropsis gadita... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G01040NO08G01040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G01040.1NO08G01040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G01040.1.cds1NO08G01040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G01040.1 ID=NO08G01040.1|Name=NO08G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=732bp
ATGCACTCAGATACAGGCGAACAACTTTTCATGCCGTTCCACCTCATCAC
CAAGGTCCACTTGACGCAGCTCCTGGCCGTGAGCACCATACTCTCTGGCA
CGACCTTTATCGGCGTGCGAGCCTTTGCCAAACCTGCCACCATGAGCGCA
AGCACTTCCACGAAACCTTCGTCCACATCGAGCGCCCAGAGCCTCTTCCC
CATTCCCCTCCGCAAAGTGACAGGGGAAGCTGCTGCTTTGGGCGCCAGCG
TGCCGTGCAGCAGCTTGATCAAGCCCAATGGCGCCGTCATTTTTGTGGTA
CGTCGTCCGGGATGCATCTTGTGCCGCGAAGAAGCCATGGATTTGAGCAC
CCAACTCGCCCCGCGTCTCAAGGGCCTGAAGAAGCAACCCCGGCTCATGG
CGGTGGTGGCCGAGACAACGAGCGTGGACGGTTTCGTCGAGGCGTTCAAG
GGGCTCGACACTTTTTTGGATGAGGGGCGAATGTTCCAGAAGTTCCTGGG
AGATAGGTGGTTGGGTGTGCAAGGTATGCTCTACCCATCGGTCTGGCGTA
ATGGCTCGCGGGCCACGAAGAAGTATCCGACATTGGAGGGCGATCTGAAG
GGAGAAGGGCGGCGATTGGGTGGGTTGTTGGTGGTGGATGGGAAGGGGGA
TGTGGTGTATCAGTATAATGAAAAGGTGTTCGGAGACCATGCACCAATGG
ATGAAGTGTTTGAAGCGGCGTCGAAGCTTTGA
back to top

protein sequence of NO08G01040.1

>NO08G01040.1-protein ID=NO08G01040.1-protein|Name=NO08G01040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MHSDTGEQLFMPFHLITKVHLTQLLAVSTILSGTTFIGVRAFAKPATMSA
STSTKPSSTSSAQSLFPIPLRKVTGEAAALGASVPCSSLIKPNGAVIFVV
RRPGCILCREEAMDLSTQLAPRLKGLKKQPRLMAVVAETTSVDGFVEAFK
GLDTFLDEGRMFQKFLGDRWLGVQGMLYPSVWRNGSRATKKYPTLEGDLK
GEGRRLGGLLVVDGKGDVVYQYNEKVFGDHAPMDEVFEAASKL*
back to top

mRNA from alignment at chr8:331546..332277-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G01040.1 ID=NO08G01040.1|Name=NO08G01040.1|organism=Nannochloropsis oceanica|type=mRNA|length=732bp|location=Sequence derived from alignment at chr8:331546..332277- (Nannochloropsis oceanica)
ATGCACTCAGATACAGGCGAACAACTTTTCATGCCGTTCCACCTCATCAC CAAGGTCCACTTGACGCAGCTCCTGGCCGTGAGCACCATACTCTCTGGCA CGACCTTTATCGGCGTGCGAGCCTTTGCCAAACCTGCCACCATGAGCGCA AGCACTTCCACGAAACCTTCGTCCACATCGAGCGCCCAGAGCCTCTTCCC CATTCCCCTCCGCAAAGTGACAGGGGAAGCTGCTGCTTTGGGCGCCAGCG TGCCGTGCAGCAGCTTGATCAAGCCCAATGGCGCCGTCATTTTTGTGGTA CGTCGTCCGGGATGCATCTTGTGCCGCGAAGAAGCCATGGATTTGAGCAC CCAACTCGCCCCGCGTCTCAAGGGCCTGAAGAAGCAACCCCGGCTCATGG CGGTGGTGGCCGAGACAACGAGCGTGGACGGTTTCGTCGAGGCGTTCAAG GGGCTCGACACTTTTTTGGATGAGGGGCGAATGTTCCAGAAGTTCCTGGG AGATAGGTGGTTGGGTGTGCAAGGTATGCTCTACCCATCGGTCTGGCGTA ATGGCTCGCGGGCCACGAAGAAGTATCCGACATTGGAGGGCGATCTGAAG GGAGAAGGGCGGCGATTGGGTGGGTTGTTGGTGGTGGATGGGAAGGGGGA TGTGGTGTATCAGTATAATGAAAAGGTGTTCGGAGACCATGCACCAATGG ATGAAGTGTTTGAAGCGGCGTCGAAGCTTTGA
back to top

Coding sequence (CDS) from alignment at chr8:331546..332277-

>NO08G01040.1 ID=NO08G01040.1|Name=NO08G01040.1|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at chr8:331546..332277- (Nannochloropsis oceanica)
ATGCACTCAGATACAGGCGAACAACTTTTCATGCCGTTCCACCTCATCAC
CAAGGTCCACTTGACGCAGCTCCTGGCCGTGAGCACCATACTCTCTGGCA
CGACCTTTATCGGCGTGCGAGCCTTTGCCAAACCTGCCACCATGAGCGCA
AGCACTTCCACGAAACCTTCGTCCACATCGAGCGCCCAGAGCCTCTTCCC
CATTCCCCTCCGCAAAGTGACAGGGGAAGCTGCTGCTTTGGGCGCCAGCG
TGCCGTGCAGCAGCTTGATCAAGCCCAATGGCGCCGTCATTTTTGTGGTA
CGTCGTCCGGGATGCATCTTGTGCCGCGAAGAAGCCATGGATTTGAGCAC
CCAACTCGCCCCGCGTCTCAAGGGCCTGAAGAAGCAACCCCGGCTCATGG
CGGTGGTGGCCGAGACAACGAGCGTGGACGGTTTCGTCGAGGCGTTCAAG
GGGCTCGACACTTTTTTGGATGAGGGGCGAATGTTCCAGAAGTTCCTGGG
AGATAGGTGGTTGGGTGTGCAAGGTATGCTCTACCCATCGGTCTGGCGTA
ATGGCTCGCGGGCCACGAAGAAGTATCCGACATTGGAGGGCGATCTGAAG
GGAGAAGGGCGGCGATTGGGTGGGTTGTTGGTGGTGGATGGGAAGGGGGA
TGTGGTGTATCAGTATAATGAAAAGGTGTTCGGAGACCATGCACCAATGG
ATGAAGTGTTTGAAGCGGCGTCGAAGCTTTGA
back to top
Synonyms
Publications