NO08G00960.1, NO08G00960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00960.1
Unique NameNO08G00960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length437
Alignment locationchr8:310839..311661 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:310839..311661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00960.1 vs.
Match: EWM26655.1 (hypothetical protein Naga_100001g5 [Nannochloropsis gaditana])

HSP 1 Score: 103.6 bits (257), Expect = 2.600e-19
Identity = 51/72 (70.83%), Postives = 57/72 (79.17%), Query Frame = 0 
Query:    1 MFF-QRPSSSPAYRAAAWGVAILGVVAWTYWEQKKEIDTTFSQEEAAKWNERVKRKTKSRGVSTPTTGNSSS 72
            MFF  +PSSSPAYR AAWGVAI+G+VAWTYW+QKKE DT F+ EEAAKWNERVK KTK+R    PT G   S
Sbjct:    1 MFFKNQPSSSPAYRMAAWGVAIVGLVAWTYWDQKKETDTRFTSEEAAKWNERVKGKTKARAAQPPTDGGKPS 72
The following BLAST results are available for this feature:
BLAST of NO08G00960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26655.12.600e-1970.83hypothetical protein Naga_100001g5 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00960NO08G00960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00960.1NO08G00960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00960.1.cds1NO08G00960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00960.1.cds2NO08G00960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00960.1 ID=NO08G00960.1|Name=NO08G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=437bp
ACAGGGTGTTCCATTTCCGCGACAGACCGTGACGGCGGTGCTGTAATCAC
CAGCCAAGCAAATCGAAGGGTAGGGGGTGTAGTGTCAGCATCATCGACAG
CCTCCTTACTCTACGGAGCAACGATGTTTTTCCAAAGACCGTCATCCAGT
CCGGCGTACCGCGCAGCCGCGTGGGGGGTGGCGATTTTAGGCGTGGTCGC
CTGGACGTACTGGGAGCAAAAGAAGGAGATAGACACGACGTTCAGCCAGG
AGGAAGCCGCAAAATGGAACGAAAGAGTGAAGAGAAAGACCAAGTCGCGT
GGCGTATCGACACCTACTACAGGCAACTCTTCCTCCAAGTAAAAAGAATG
GCGAAGCAAAGCTATCGAATATCCTCCTATCATGGCAAAGACAGGAGAGG
AAGAAAAAAGAAGAAAAAAGGAAGAAAAAGAAAAGTG
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protein sequence of NO08G00960.1

>NO08G00960.1-protein ID=NO08G00960.1-protein|Name=NO08G00960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=73bp
MFFQRPSSSPAYRAAAWGVAILGVVAWTYWEQKKEIDTTFSQEEAAKWNE
RVKRKTKSRGVSTPTTGNSSSK*
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mRNA from alignment at chr8:310839..311661+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00960.1 ID=NO08G00960.1|Name=NO08G00960.1|organism=Nannochloropsis oceanica|type=mRNA|length=823bp|location=Sequence derived from alignment at chr8:310839..311661+ (Nannochloropsis oceanica)
ACAGGGTGTTCCATTTCCGCGACAGACCGTGACGGCGGTGCTGTAATCAC
CAGCCAAGCAAATCGAAGGGTAGGGGGTGTAGTGTCAGCATCATCGACAG
CCTCCTTACTCTACGGAGCAACGATGTTTTTCCAAAGACCGTCATCCAGT
CCGGCGTACCGCGCAGCCGCGTGGGGGGTGGCGATTTTAGGCGTGGTCGC
CTGGACGTACTGGTAAGTAAGCAGAGTGGGAGAAGGAGTAGCAAGCGGCA
CTTCTGTGTAGCAGGCCATAGGCAGCGCCCGCTTCATGTCGACGTCGCAG
TCGGGATCCGCGTAAGTGTTGCGTGTGCTCATTTTCTCCTCGCTCGTTAT
CTTCTTTCTGGCTCTCTCTTGTGGTAGTCCCAGGTACTGGGCCGTATTGC
TACAGGCAGGAGTCGTTTCCTTACTCCTCTTCCCACCCGGCGCCATAAAG
CGATTTGATATGATGAATACCAACGAAATTTTACTGGAGATTGACTCATG
CAAAGTACTTCAGCAAGCTTTTGAGTGCTTGAACTTGCAGAATTATTTCC
GATTATATCCTCTTACTTGACCCCCCATCCCTATCCCTATGACCACAGGG
AGCAAAAGAAGGAGATAGACACGACGTTCAGCCAGGAGGAAGCCGCAAAA
TGGAACGAAAGAGTGAAGAGAAAGACCAAGTCGCGTGGCGTATCGACACC
TACTACAGGCAACTCTTCCTCCAAGTAAAAAGAATGGCGAAGCAAAGCTA
TCGAATATCCTCCTATCATGGCAAAGACAGGAGAGGAAGAAAAAAGAAGA
AAAAAGGAAGAAAAAGAAAAGTG
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Coding sequence (CDS) from alignment at chr8:310839..311661+

>NO08G00960.1 ID=NO08G00960.1|Name=NO08G00960.1|organism=Nannochloropsis oceanica|type=CDS|length=219bp|location=Sequence derived from alignment at chr8:310839..311661+ (Nannochloropsis oceanica)
ATGTTTTTCCAAAGACCGTCATCCAGTCCGGCGTACCGCGCAGCCGCGTG
GGGGGTGGCGATTTTAGGCGTGGTCGCCTGGACGTACTGGGAGCAAAAGA
AGGAGATAGACACGACGTTCAGCCAGGAGGAAGCCGCAAAATGGAACGAA
AGAGTGAAGAGAAAGACCAAGTCGCGTGGCGTATCGACACCTACTACAGG
CAACTCTTCCTCCAAGTAA
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Synonyms
Publications