NO08G00940.1, NO08G00940.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO08G00940.1
Unique Name	NO08G00940.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1995
Alignment location	chr8:302937..305605 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr8	genome	chr8:302937..305605 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO08G00940.1 vs.
Match: EWM26779.1 (had-superfamily subfamily iia hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 550.1 bits (1416), Expect = 5.800e-153
Identity = 266/374 (71.12%), Postives = 310/374 (82.89%), Query Frame = 0

Query:   28 RHSAQALSSCRSISSTSAA---HVVPFAIACDIDGVLVRGGTPIPGAGPVLEYLVDSQRSPNLSRRLPYIFITNGGGCLEEAKATEICDVFFPGLSHPIRSSQILLSHTPMRSLLPQYKDKQILALGSRDYTAVCRSYGFQNVVTVEDVLHAHPELYPFKTYHKRLDLHKDSFSAIFILHDPVDWAPEIQVLCDLLEEGKLSSGSSSSSNSAKKGHIPVYSSNSDLVYSSSHKVPRLAQGAFLAAWETVYQKCYGGTKIDITRFGKPWETSYRHAEKMLVHEARLLGLTGKDPAPHQAHPHKNFPIKRVYAIGDNPSSDVEGANRADGHVCEWISILVKTGVFNDDSAEHKAKYVVADIAEAFRLILELEKYQL 399
            R  A   + CR  + +SAA     VPFA+A DIDGVLVRGG  IPGAG VLEYLV++Q +PN++RR+P++F+TNGGGC+E+AKA E+ DVFFP L  PIR SQ++LSHTPM+SLLP YKDKQILALGS+DY AVCR+YGFQ+VVTVEDVLHAHPELYPFKTYHKR DLH D F+A+FILHDPVDWAPEIQVLCD+ E G+L       ++S K  HIPVYSSNSDLV+SS + VPRLAQGAFL AWE VY+ CYGG  I+ITRFGKPWE+SYRHAEKMLVHEARLLGLTGKD  PH+ H HK++PI+RVYA+GDNP SDVEGANRADGH CEW+SILVKTGV+  +   H AK+VVAD+ EAFRLILELE Y +
Sbjct:   24 RKLASVRAKCRPRTLSSAATSASPVPFAVAFDIDGVLVRGGNQIPGAGRVLEYLVEAQSNPNVARRVPFVFLTNGGGCMEDAKAHEMSDVFFPELPVPIRPSQVMLSHTPMKSLLPLYKDKQILALGSKDYAAVCRAYGFQHVVTVEDVLHAHPELYPFKTYHKRHDLHTDPFAAVFILHDPVDWAPEIQVLCDVFEGGRLVG--KDPADSGKHSHIPVYSSNSDLVFSSGYAVPRLAQGAFLTAWEAVYRACYGGKGIEITRFGKPWESSYRHAEKMLVHEARLLGLTGKDLPPHKPHEHKHYPIQRVYAVGDNPLSDVEGANRADGHHCEWVSILVKTGVYK-EGMPHAAKHVVADVTEAFRLILELEGYDI 394

The following BLAST results are available for this feature:

BLAST of NO08G00940.1 vs.

BLAST of NO08G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26779.1	5.800e-153	71.12	had-superfamily subfamily iia hydrolase [Nannochlo...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO08G00940	NO08G00940	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00940.1	NO08G00940.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO08G00940.1.cds1	NO08G00940.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00940.1.cds2	NO08G00940.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00940.1.cds3	NO08G00940.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00940.1.cds4	NO08G00940.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO08G00940.1.cds5	NO08G00940.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr8:302937..305605-
coding sequence from alignment at chr8:302937..305605-

mRNA sequence

>NO08G00940.1 ID=NO08G00940.1|Name=NO08G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1995bp
AGCAGGACAACTAATTCAAGCATGAGGAAATTCGGGATTCGATGACATAC
GACAGCACTTGGTTCCAGTCGTGTACGTGCATTCGGTGTGATTTGATCCC
AACTCTTGTCCATTTAATGCATCACCCAGAGTGCAGGGGAAGGCCACTTC
AAATAGAGACTACCTCCCGCATCCGAGTCCCTCCAAAGGCTCTACCAAAA
GTCCATATTTCTTGTTTCACATGCCCGACGCAACAAACAGCGTTCAAACT
CTTTTTGCCCCTCTGCATGGTTGTGCTCGAGGTTCTGAGGTCGCTTAGAT
TTCGTAGATGCGGGATGTGTGGATGGACCACTACAACCGTTGCCCAACAC
GGATCGCTCAAATGCCCCTTCCACAAACCACAAGAGGGCGGACCTTTAAA
TACGCACCTGGAGAGATGTCGAAAACGGCGGGGATTAACGGGAAAGGTCC
GATGCTGCCTATCCAGGAGCGTGGACAGCCTGTAATTCTATTATTCCTAA
ACACCCCCACTCTCCATTGTTTCCTCTCGCGGCAGAGACGGGCCGTCCCA
CCTGCACCGCGTCCCCATCATGCTGCTCCGTCGCTTGTCGACGGCCGCCG
TTCCCAGTACCAGGACCGCCGTGTCCGTGTCGTCCTCTTCTTTATGTAGC
AGGCACAGCGCCCAAGCCCTTTCAAGCTGCCGCTCCATATCCTCGACTTC
TGCGGCTCATGTTGTTCCATTTGCTATTGCCTGTGACATTGACGGCGTTC
TGGTGCGTGGAGGCACGCCCATTCCTGGGGCGGGACCAGTATTGGAGTAC
CTTGTCGACTCACAAAGGAGTCCGAATTTGTCCAGGCGCCTTCCTTACAT
TTTCATTACAAACGGAGGGGGATGCTTGGAGGAAGCAAAGGCCACGGAGA
TTTGCGACGTGTTTTTCCCCGGCCTGTCCCATCCTATCCGCTCTAGCCAG
ATCCTGCTTTCCCATACGCCTATGCGCTCCCTCCTCCCTCAGTACAAGGA
CAAACAAATCCTGGCCTTGGGCTCCAGAGACTACACTGCCGTCTGTCGGT
CGTATGGCTTTCAGAACGTGGTAACGGTAGAGGACGTACTGCACGCGCAC
CCAGAGCTGTACCCGTTCAAAACCTACCACAAACGGCTTGATTTGCATAA
AGACTCTTTCTCTGCCATCTTCATCCTCCATGACCCGGTGGACTGGGCGC
CTGAGATCCAGGTACTCTGTGACCTGCTGGAAGAGGGCAAGCTCAGCAGC
GGCAGCAGCAGCAGTAGCAACAGTGCCAAGAAAGGTCATATCCCTGTGTA
TTCGTCCAATTCTGACTTGGTGTACAGCAGCAGCCACAAGGTGCCTCGAT
TGGCGCAAGGTGCATTTTTGGCGGCCTGGGAGACGGTGTATCAGAAATGC
TATGGCGGAACAAAGATCGACATCACCCGGTTTGGCAAGCCGTGGGAAAC
AAGCTACAGACATGCCGAGAAGATGCTCGTTCACGAAGCCCGACTGCTGG
GACTGACAGGAAAAGATCCGGCTCCTCACCAGGCACACCCACACAAGAAC
TTCCCCATCAAGAGGGTGTATGCCATTGGGGATAATCCGTCGAGCGACGT
GGAAGGCGCCAATCGTGCCGATGGGCACGTGTGCGAGTGGATCTCCATCC
TTGTCAAGACGGGTGTCTTCAATGATGACTCCGCCGAGCACAAGGCCAAG
TATGTCGTGGCTGACATTGCGGAGGCTTTTCGTCTTATTCTCGAGCTGGA
GAAGTACCAACTTTAACTGGATTTTTTTGAAGAAACAAGAGAGGGAAGTA
TTTGTACATAAAATATACGAAAATAGGGAGGGAAGGAGGGAGACGAAAAA
GGATGTTTTCGTCATTTTGATTTTGTCGATTTAAACAGAAAAACATTGCG
AGGGCGACAAAACATTTGAGGGTTAATCAGGTAGTAACTGGAATGATTCT
AAAAGCTTTCTTTTAATTAGCACGGTAACCTCCCCACACTTTTTT

protein sequence of NO08G00940.1

>NO08G00940.1-protein ID=NO08G00940.1-protein|Name=NO08G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=399bp
MLLRRLSTAAVPSTRTAVSVSSSSLCSRHSAQALSSCRSISSTSAAHVVP
FAIACDIDGVLVRGGTPIPGAGPVLEYLVDSQRSPNLSRRLPYIFITNGG
GCLEEAKATEICDVFFPGLSHPIRSSQILLSHTPMRSLLPQYKDKQILAL
GSRDYTAVCRSYGFQNVVTVEDVLHAHPELYPFKTYHKRLDLHKDSFSAI
FILHDPVDWAPEIQVLCDLLEEGKLSSGSSSSSNSAKKGHIPVYSSNSDL
VYSSSHKVPRLAQGAFLAAWETVYQKCYGGTKIDITRFGKPWETSYRHAE
KMLVHEARLLGLTGKDPAPHQAHPHKNFPIKRVYAIGDNPSSDVEGANRA
DGHVCEWISILVKTGVFNDDSAEHKAKYVVADIAEAFRLILELEKYQL*

mRNA from alignment at chr8:302937..305605-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO08G00940.1 ID=NO08G00940.1|Name=NO08G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=2669bp|location=Sequence derived from alignment at chr8:302937..305605- (Nannochloropsis oceanica)
AGCAGGACAACTAATTCAAGCATGAGGAAATTCGGGATTCGATGACATAC
GACAGCACTTGGTTCCAGTCGTGTACGTGCATTCGGTGTGATTTGATCCC
AACTCTTGTCCATTTAATGCATCACCCAGAGTGCAGGGGAAGGCCACTTC
AAATAGAGACTACCTCCCGCATCCGAGTCCCTCCAAAGGCTCTACCAAAA
GTCCATATTTCTTGTTTCACATGCCCGACGCAACAAACAGCGTTCAAACT
CTTTTTGCCCCTCTGCATGGTTGTGCTCGAGGTTCTGAGGTCGCTTAGAT
TTCGTAGATGCGGGATGTGTGGATGGACCACTACAACCGTTGCCCAACAC
GGATCGCTCAAATGCCCCTTCCACAAACCACAAGAGGGCGGACCTTTAAA
TACGCACCTGGAGAGATGTCGAAAACGGCGGGGATTAACGGGAAAGGTCC
GATGCTGCCTATCCAGGAGCGTGGACAGCCTGTAATTCTATTATTCCTAA
ACACCCCCACTCTCCATTGTTTCCTCTCGCGGCAGAGACGGGCCGTCCCA
CCTGCACCGCGTCCCCATCATGCTGCTCCGTCGCTTGTCGACGGCCGCCG
TTCCCAGTACCAGGACCGCCGTGTCCGTGTCGTCCTCTTCTTTATGTAGC
AGGCACAGCGCCCAAGCCCTTTCAAGCTGCCGCTCCATATCCTCGACTTC
TGCGGCTCATGTTGTTCCATTTGCTATTGCCTGTGACATTGACGGCGTTC
TGGTGCGTGGAGGCACGCCCATTCCTGGGGCGGGACCAGTATTGGAGTAC
CTTGTCGACTCACAAAGGAGTCCGAATTTGTCCAGGCGCCTTCCTTACAT
TTTCATTACAAACGGAGGGGGATGCTTGGAGGAAGCAAAGGCCACGGAGA
TTTGCGACGTGTTTTTCCCCGGCCTGTCCCATCCTATCCGCTCTAGCCAG
GTAGGTGAATGAGAAATAAGGAGGACCGGGGTAGAAAAGAGAGGGATAAA
CATGTGCTTGTGAATGGGGAGGGAGAGAGCTTCGTGACCCACATTTTGCA
TCTGCTCCTTTTCTCCTCAATACTTGAATCACTCTCTTCTTCCTCCTCTT
ACTCAATCCCCCTTTCCTCCTTCATACTTGAATCATCCTATCTTCCTCCT
CTCAACCAAATTGCCACAGATCCTGCTTTCCCATACGCCTATGCGCTCCC
TCCTCCCTCAGTACAAGGACAAACAAATCCTGGCCTTGGGCTCCAGAGAC
TACACTGCCGTCTGTCGGTCGTATGGCTTTCAGAACGTGGTAACGGTAGA
GGACGTACTGCACGCGCACCCAGAGCTGTACCCGTTCAAAACCTACCACA
AACGGCTTGATTTGCATAAAGACTCTTTCTCTGGTATGTCTTGCCATGGT
CTCATAGTGTATGAGTGTGTGGGGTTTAATTTTACTGGAGATGTTCTCAG
TTCTAACCCTCTTGCCTTCCTCTCGCGTTTCCCTTCTTTCTCTTTCCCTC
CCTCCTTCTTCCTTTCTTGCCCTCTGTAGCCATCTTCATCCTCCATGACC
CGGTGGACTGGGCGCCTGAGATCCAGGTACTCTGTGACCTGCTGGAAGAG
GGCAAGCTCAGCAGCGGCAGCAGCAGCAGTAGCAACAGTGCCAAGAAAGG
TCATATCCCTGTGTATTCGTCCAATTCTGACTTGGTGTACAGCAGCAGCC
ACAAGGTGCCTCGATTGGCGCAAGGTGCATTTTTGGCGGCCTGGGAGACG
GTGTATCAGAAATGCTATGGCGGAACAAAGATCGGTGAGTTGAGTTTCAG
TCAGAGAAAGAGACCCGGAGACTGAATTTGAGTGCTCGGATTGAACGTCA
ACAATCGCTATGTGGCACGTTTCCTCTCCCTTCTTCCTCAAAGCATCGCT
CCCTCTTTATATCCCCCCTCCCTCCTTGTCTAGACATCACCCGGTTTGGC
AAGCCGTGGGAAACAAGCTACAGACATGCCGAGAAGATGCTCGTTCACGA
AGCCCGACTGCTGGGACTGACAGGAAAAGATCCGGCTCCTCACCAGGCAC
ACCCACACAAGAACTTCCCCATCAAGAGGGTGTATGCCATTGGGGATAAT
CCGTCGAGCGACGTGGAAGGTGAGAGCGGGGATGGCAAGGGAGGGAGGGA
GGGAGAGATGGACTGAAAAACCGGGGCGTTTCCAACTTTCGAGGGTTTGC
CATTCCTGCTTGCTTGCCCTGCCCTTTTTTGTGAAAAACACTCAGCCAGC
TCGTATTCTATTCCTTGTGTCCTACGCAGGCGCCAATCGTGCCGATGGGC
ACGTGTGCGAGTGGATCTCCATCCTTGTCAAGACGGGTGTCTTCAATGAT
GACTCCGCCGAGCACAAGGCCAAGTATGTCGTGGCTGACATTGCGGAGGC
TTTTCGTCTTATTCTCGAGCTGGAGAAGTACCAACTTTAACTGGATTTTT
TTGAAGAAACAAGAGAGGGAAGTATTTGTACATAAAATATACGAAAATAG
GGAGGGAAGGAGGGAGACGAAAAAGGATGTTTTCGTCATTTTGATTTTGT
CGATTTAAACAGAAAAACATTGCGAGGGCGACAAAACATTTGAGGGTTAA
TCAGGTAGTAACTGGAATGATTCTAAAAGCTTTCTTTTAATTAGCACGGT
AACCTCCCCACACTTTTTT

Coding sequence (CDS) from alignment at chr8:302937..305605-

>NO08G00940.1 ID=NO08G00940.1|Name=NO08G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=1197bp|location=Sequence derived from alignment at chr8:302937..305605- (Nannochloropsis oceanica)
ATGCTGCTCCGTCGCTTGTCGACGGCCGCCGTTCCCAGTACCAGGACCGC
CGTGTCCGTGTCGTCCTCTTCTTTATGTAGCAGGCACAGCGCCCAAGCCC
TTTCAAGCTGCCGCTCCATATCCTCGACTTCTGCGGCTCATGTTGTTCCA
TTTGCTATTGCCTGTGACATTGACGGCGTTCTGGTGCGTGGAGGCACGCC
CATTCCTGGGGCGGGACCAGTATTGGAGTACCTTGTCGACTCACAAAGGA
GTCCGAATTTGTCCAGGCGCCTTCCTTACATTTTCATTACAAACGGAGGG
GGATGCTTGGAGGAAGCAAAGGCCACGGAGATTTGCGACGTGTTTTTCCC
CGGCCTGTCCCATCCTATCCGCTCTAGCCAGATCCTGCTTTCCCATACGC
CTATGCGCTCCCTCCTCCCTCAGTACAAGGACAAACAAATCCTGGCCTTG
GGCTCCAGAGACTACACTGCCGTCTGTCGGTCGTATGGCTTTCAGAACGT
GGTAACGGTAGAGGACGTACTGCACGCGCACCCAGAGCTGTACCCGTTCA
AAACCTACCACAAACGGCTTGATTTGCATAAAGACTCTTTCTCTGCCATC
TTCATCCTCCATGACCCGGTGGACTGGGCGCCTGAGATCCAGGTACTCTG
TGACCTGCTGGAAGAGGGCAAGCTCAGCAGCGGCAGCAGCAGCAGTAGCA
ACAGTGCCAAGAAAGGTCATATCCCTGTGTATTCGTCCAATTCTGACTTG
GTGTACAGCAGCAGCCACAAGGTGCCTCGATTGGCGCAAGGTGCATTTTT
GGCGGCCTGGGAGACGGTGTATCAGAAATGCTATGGCGGAACAAAGATCG
ACATCACCCGGTTTGGCAAGCCGTGGGAAACAAGCTACAGACATGCCGAG
AAGATGCTCGTTCACGAAGCCCGACTGCTGGGACTGACAGGAAAAGATCC
GGCTCCTCACCAGGCACACCCACACAAGAACTTCCCCATCAAGAGGGTGT
ATGCCATTGGGGATAATCCGTCGAGCGACGTGGAAGGCGCCAATCGTGCC
GATGGGCACGTGTGCGAGTGGATCTCCATCCTTGTCAAGACGGGTGTCTT
CAATGATGACTCCGCCGAGCACAAGGCCAAGTATGTCGTGGCTGACATTG
CGGAGGCTTTTCGTCTTATTCTCGAGCTGGAGAAGTACCAACTTTAA

Synonyms

Publications