NO08G00900.1, NO08G00900.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00900.1
Unique NameNO08G00900.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length453
Alignment locationchr8:291056..291817 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:291056..291817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO08G00900.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00900NO08G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00900.1NO08G00900.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00900.1.cds1NO08G00900.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00900.1.cds2NO08G00900.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00900.1.cds3NO08G00900.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00900.1 ID=NO08G00900.1|Name=NO08G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGTCCATTCGTTCATATCATGGAGAGGAGGAGGAAGAGGAAGAGAAGTT
CTCTTTCTTCTTTGAATGGCATTATCCTACAATCAACCACCACTACAAGT
CCTTGAAAACCATACAGTGCCACAATGCAGCAGTAGTAGTAGTAGCAGCA
GCAACAACAGCAGGTGTAGTACAGCACAATCACGATGAACGTTTCCCCTG
CCAGCAGACAAAGGAAGAAGGCGCTTCCCTTGGGGAGCGAACCGAGAGAG
GGGGGGCGGGGGAAGGGGCGCCTGTGATTTATTCCTCTCAGGGACCCCTC
ATCGCATGCCTGCAGCGGCAGTCGCCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAATAGCAATCATGAGATATATTACCTCGCATTGGAGGGAACAGAATC
TACCAAACACGGGGGCCGGCGTGCATGCGTGGCGTGTCAAAGAAAGGGAG
TAA
back to top

protein sequence of NO08G00900.1

>NO08G00900.1-protein ID=NO08G00900.1-protein|Name=NO08G00900.1|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSIRSYHGEEEEEEEKFSFFFEWHYPTINHHYKSLKTIQCHNAAVVVVAA
ATTAGVVQHNHDERFPCQQTKEEGASLGERTERGGAGEGAPVIYSSQGPL
IACLQRQSPAAAAAAAAAIAIMRYITSHWREQNLPNTGAGVHAWRVKERE
*
back to top

mRNA from alignment at chr8:291056..291817-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00900.1 ID=NO08G00900.1|Name=NO08G00900.1|organism=Nannochloropsis oceanica|type=mRNA|length=762bp|location=Sequence derived from alignment at chr8:291056..291817- (Nannochloropsis oceanica)
ATGTCCATTCGTTCATATCATGGAGAGGAGGAGGAAGAGGAAGAGAAGTT
CTCTTTCTTCTTTGAATGGCATTATCCTACAATCAACCACCACTACAAGT
CCTTGAAAACCATACAGTGCCACAATGCAGCAGTAGTAGTAGTAGCAGCA
GCAACAACAGCAGGTGTAGTACAGCACAATCACGATGAACGTTTCCCCTG
TAAGTTTTTAGAAAGAGATGAGTGGACAAGAAGAGCAAAAGGGAGCCGAG
GGGCGCAAAGACTAAGGATGCAAGCCAGGAAGCCAAGGACACGATGCCCA
GGTGAATGAAGCGAAGGGCTTTGCGTGGATGGATGTAAAGGGCGTTTGTA
CCAATTGCTTACAGGCCAGCAGACAAAGGAAGAAGGCGCTTCCCTTGGGG
AGCGAACCGAGAGAGGGGGGGCGGGGGAAGGGGCGCCTGTGATTTATTCC
TCTCAGGGACCCCTCATCGCATGCCTGCAGCGGCAGTCGCCGGCAGCAGC
AGCAGCAGCAGCAGCAGCAATAGCAATCATGAGATATATTACCTCGCATT
GGAGGGAACAGGTGAGACGACACAGGGACAGAGGGAAGGAAGAAAAAGAG
CGACAGCGCTTTGTAGATGTAGAGCAGAAGACAGAGAATAAGATAGGGAG
GGAATAACAAGAGAGGGTGGGGATAATAATACCAATTTACACACATGTTC
CATAGAATCTACCAAACACGGGGGCCGGCGTGCATGCGTGGCGTGTCAAA
GAAAGGGAGTAA
back to top

Coding sequence (CDS) from alignment at chr8:291056..291817-

>NO08G00900.1 ID=NO08G00900.1|Name=NO08G00900.1|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at chr8:291056..291817- (Nannochloropsis oceanica)
ATGTCCATTCGTTCATATCATGGAGAGGAGGAGGAAGAGGAAGAGAAGTT
CTCTTTCTTCTTTGAATGGCATTATCCTACAATCAACCACCACTACAAGT
CCTTGAAAACCATACAGTGCCACAATGCAGCAGTAGTAGTAGTAGCAGCA
GCAACAACAGCAGGTGTAGTACAGCACAATCACGATGAACGTTTCCCCTG
CCAGCAGACAAAGGAAGAAGGCGCTTCCCTTGGGGAGCGAACCGAGAGAG
GGGGGGCGGGGGAAGGGGCGCCTGTGATTTATTCCTCTCAGGGACCCCTC
ATCGCATGCCTGCAGCGGCAGTCGCCGGCAGCAGCAGCAGCAGCAGCAGC
AGCAATAGCAATCATGAGATATATTACCTCGCATTGGAGGGAACAGAATC
TACCAAACACGGGGGCCGGCGTGCATGCGTGGCGTGTCAAAGAAAGGGAG
TAA
back to top
Synonyms
Publications