NO08G00820.1, NO08G00820.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00820.1
Unique NameNO08G00820.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1596
Alignment locationchr8:268615..270210 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:268615..270210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G00820.1 vs.
Match: EWM26566.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana])

HSP 1 Score: 477.6 bits (1228), Expect = 4.900e-131
Identity = 283/514 (55.06%), Postives = 356/514 (69.26%), Query Frame = 0
Query:   19 AGVFSMLAT-YIAVAR-SRKGKRIGSCN---KPQALPQQEQPLKGSEDAACVVERDLRKQSPPLTAVPREVLQLHTLRQLNLMGNALVSLPTEIGGLTQLRILGLTDNNLTALPDSIGCLNELVALYVTNNKLTHFPPSIGQLASLRKFQASFNALQALPEEMADMRSLELFRAAGNPDLASIPPALAKAPALTWLSLGGSKFCASFSKNDPASEDEQEQHDAAWWSAT-----------------TSSSSTTEGRRSSSRKSSSVLPLVERRSLTLAQKLGDGASGEVFLSQWHPIAFASSCSSSSSFSSLKNKLTPEKLKKKTEKKNEAQKVAVKIFRNDTSPDGRAIDELEILCLLEHPNLSKVRALLLDDNDDTLPS--LPPSRPRPPVGVVMDFIAGQPLAAKPNHTSMLRCRWEEGKTYPLRVVLRLAQDVTGALRHLHEKQICHGDVYAHNCLMDEEGNTTLVDYGASFMYGGGEDGGRGGGEGGMDFEKLEVRAFGLLLRDLMERV 509
            AG+ + LA+ Y+A+ + S+K K +  C    +PQ   ++E+P     +    ++RDL  Q   LTAVP EV Q+ +LR LNLMGN+L  LP+EIG L+QL ILGL DN LTALP SIG L  LVALYVTNN LT+ PPSIG+L +LRKFQASFN LQALPEEM +MRSLELFRAAGNP L SIP +LA+AP+LTWLSLGGSKFC +FS+N   +    E+  A WW+                    +S++TTE    +  +   V P + R++L L +KLGDGASGEVFLS+W      ++ + S+S +S K +LTP+K KK  E      +VAVKIFR+D SPDGRAIDELE+LCLLEHPNLSK RAL+++D  +         +    P+GVVMD + GQ +AAKP+HTSMLRCRWEEG+ Y   VVLR+A ++  AL HLH K I HGDVYAHNC++DEEGNTTL+DYGA+F+Y  GE GGR  G  G+D EKLEVRAFGLLL DL+ R+
Sbjct:   39 AGLLTFLASAYVAMKKNSKKKKYLEYCALKLRPQESEKEEEPQSLCHEE---IKRDLACQG--LTAVPAEVFQMRSLRILNLMGNSLTFLPSEIGQLSQLEILGLKDNRLTALPASIGDLTGLVALYVTNNGLTNLPPSIGRLVNLRKFQASFNDLQALPEEMGNMRSLELFRAAGNPKLLSIPVSLARAPSLTWLSLGGSKFCDAFSRN---TLGPPEKDGAQWWAMEGHRGGRGACARGRSIDHDTSNTTTE---CTGGRYIEVPPSIPRKTLQLERKLGDGASGEVFLSEWEN---GTAAALSASSASWKRRLTPQKKKKAKE------QVAVKIFRHDVSPDGRAIDELEVLCLLEHPNLSKARALVVEDEGEAGRGGLRSGTEGLRPIGVVMDLVPGQAMAAKPDHTSMLRCRWEEGRLYSHAVVLRIAHNLAAALMHLHAKGIFHGDVYAHNCVVDEEGNTTLLDYGAAFLYSVGEGGGREEGMEGLDLEKLEVRAFGLLLADLLPRL 532          
The following BLAST results are available for this feature:
BLAST of NO08G00820.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26566.14.900e-13155.06Protein kinase, catalytic domain protein [Nannochl... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00820NO08G00820Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00820.1NO08G00820.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00820.1.cds1NO08G00820.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp
ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC
CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA
GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA
CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA
GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG
TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG
GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG
GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA
ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA
CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA
TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC
TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC
GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG
CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC
ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA
GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA
ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG
AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC
TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT
CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA
TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA
ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT
CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC
GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG
GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA
GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG
CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG
CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG
GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG
AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG
TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA
GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA
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protein sequence of NO08G00820.1

>NO08G00820.1-protein ID=NO08G00820.1-protein|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp
MKLRQHHAKGIVLVTAAVAGVFSMLATYIAVARSRKGKRIGSCNKPQALP
QQEQPLKGSEDAACVVERDLRKQSPPLTAVPREVLQLHTLRQLNLMGNAL
VSLPTEIGGLTQLRILGLTDNNLTALPDSIGCLNELVALYVTNNKLTHFP
PSIGQLASLRKFQASFNALQALPEEMADMRSLELFRAAGNPDLASIPPAL
AKAPALTWLSLGGSKFCASFSKNDPASEDEQEQHDAAWWSATTSSSSTTE
GRRSSSRKSSSVLPLVERRSLTLAQKLGDGASGEVFLSQWHPIAFASSCS
SSSSFSSLKNKLTPEKLKKKTEKKNEAQKVAVKIFRNDTSPDGRAIDELE
ILCLLEHPNLSKVRALLLDDNDDTLPSLPPSRPRPPVGVVMDFIAGQPLA
AKPNHTSMLRCRWEEGKTYPLRVVLRLAQDVTGALRHLHEKQICHGDVYA
HNCLMDEEGNTTLVDYGASFMYGGGEDGGRGGGEGGMDFEKLEVRAFGLL
LRDLMERVKGKGWGEEEGGGMGRGTISGRQH*
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mRNA from alignment at chr8:268615..270210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at chr8:268615..270210+ (Nannochloropsis oceanica)
ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA
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Coding sequence (CDS) from alignment at chr8:268615..270210+

>NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr8:268615..270210+ (Nannochloropsis oceanica)
ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC
CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA
GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA
CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA
GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG
TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG
GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG
GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA
ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA
CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA
TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC
TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC
GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG
CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC
ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA
GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA
ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG
AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC
TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT
CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA
TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA
ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT
CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC
GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG
GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA
GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG
CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG
CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG
GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG
AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG
TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA
GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA
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Synonyms
Publications