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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:268615..270210 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00820.1 vs.
Match: EWM26566.1 (Protein kinase, catalytic domain protein [Nannochloropsis gaditana]) HSP 1 Score: 477.6 bits (1228), Expect = 4.900e-131 Identity = 283/514 (55.06%), Postives = 356/514 (69.26%), Query Frame = 0
Query: 19 AGVFSMLAT-YIAVAR-SRKGKRIGSCN---KPQALPQQEQPLKGSEDAACVVERDLRKQSPPLTAVPREVLQLHTLRQLNLMGNALVSLPTEIGGLTQLRILGLTDNNLTALPDSIGCLNELVALYVTNNKLTHFPPSIGQLASLRKFQASFNALQALPEEMADMRSLELFRAAGNPDLASIPPALAKAPALTWLSLGGSKFCASFSKNDPASEDEQEQHDAAWWSAT-----------------TSSSSTTEGRRSSSRKSSSVLPLVERRSLTLAQKLGDGASGEVFLSQWHPIAFASSCSSSSSFSSLKNKLTPEKLKKKTEKKNEAQKVAVKIFRNDTSPDGRAIDELEILCLLEHPNLSKVRALLLDDNDDTLPS--LPPSRPRPPVGVVMDFIAGQPLAAKPNHTSMLRCRWEEGKTYPLRVVLRLAQDVTGALRHLHEKQICHGDVYAHNCLMDEEGNTTLVDYGASFMYGGGEDGGRGGGEGGMDFEKLEVRAFGLLLRDLMERV 509
AG+ + LA+ Y+A+ + S+K K + C +PQ ++E+P + ++RDL Q LTAVP EV Q+ +LR LNLMGN+L LP+EIG L+QL ILGL DN LTALP SIG L LVALYVTNN LT+ PPSIG+L +LRKFQASFN LQALPEEM +MRSLELFRAAGNP L SIP +LA+AP+LTWLSLGGSKFC +FS+N + E+ A WW+ +S++TTE + + V P + R++L L +KLGDGASGEVFLS+W ++ + S+S +S K +LTP+K KK E +VAVKIFR+D SPDGRAIDELE+LCLLEHPNLSK RAL+++D + + P+GVVMD + GQ +AAKP+HTSMLRCRWEEG+ Y VVLR+A ++ AL HLH K I HGDVYAHNC++DEEGNTTL+DYGA+F+Y GE GGR G G+D EKLEVRAFGLLL DL+ R+
Sbjct: 39 AGLLTFLASAYVAMKKNSKKKKYLEYCALKLRPQESEKEEEPQSLCHEE---IKRDLACQG--LTAVPAEVFQMRSLRILNLMGNSLTFLPSEIGQLSQLEILGLKDNRLTALPASIGDLTGLVALYVTNNGLTNLPPSIGRLVNLRKFQASFNDLQALPEEMGNMRSLELFRAAGNPKLLSIPVSLARAPSLTWLSLGGSKFCDAFSRN---TLGPPEKDGAQWWAMEGHRGGRGACARGRSIDHDTSNTTTE---CTGGRYIEVPPSIPRKTLQLERKLGDGASGEVFLSEWEN---GTAAALSASSASWKRRLTPQKKKKAKE------QVAVKIFRHDVSPDGRAIDELEVLCLLEHPNLSKARALVVEDEGEAGRGGLRSGTEGLRPIGVVMDLVPGQAMAAKPDHTSMLRCRWEEGRLYSHAVVLRIAHNLAAALMHLHAKGIFHGDVYAHNCVVDEEGNTTLLDYGAAFLYSVGEGGGREEGMEGLDLEKLEVRAFGLLLADLLPRL 532
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA back to topprotein sequence of NO08G00820.1 >NO08G00820.1-protein ID=NO08G00820.1-protein|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=polypeptide|length=532bp MKLRQHHAKGIVLVTAAVAGVFSMLATYIAVARSRKGKRIGSCNKPQALP QQEQPLKGSEDAACVVERDLRKQSPPLTAVPREVLQLHTLRQLNLMGNAL VSLPTEIGGLTQLRILGLTDNNLTALPDSIGCLNELVALYVTNNKLTHFP PSIGQLASLRKFQASFNALQALPEEMADMRSLELFRAAGNPDLASIPPAL AKAPALTWLSLGGSKFCASFSKNDPASEDEQEQHDAAWWSATTSSSSTTE GRRSSSRKSSSVLPLVERRSLTLAQKLGDGASGEVFLSQWHPIAFASSCS SSSSFSSLKNKLTPEKLKKKTEKKNEAQKVAVKIFRNDTSPDGRAIDELE ILCLLEHPNLSKVRALLLDDNDDTLPSLPPSRPRPPVGVVMDFIAGQPLA AKPNHTSMLRCRWEEGKTYPLRVVLRLAQDVTGALRHLHEKQICHGDVYA HNCLMDEEGNTTLVDYGASFMYGGGEDGGRGGGEGGMDFEKLEVRAFGLL LRDLMERVKGKGWGEEEGGGMGRGTISGRQH* back to topmRNA from alignment at chr8:268615..270210+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=mRNA|length=1596bp|location=Sequence derived from alignment at chr8:268615..270210+ (Nannochloropsis oceanica) ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC
CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA
GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA
CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA
GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG
TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG
GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG
GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA
ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA
CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA
TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC
TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC
GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG
CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC
ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA
GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA
ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG
AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC
TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT
CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA
TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA
ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT
CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC
GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG
GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA
GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG
CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG
CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG
GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG
AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG
TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA
GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA back to topCoding sequence (CDS) from alignment at chr8:268615..270210+ >NO08G00820.1 ID=NO08G00820.1|Name=NO08G00820.1|organism=Nannochloropsis oceanica|type=CDS|length=1596bp|location=Sequence derived from alignment at chr8:268615..270210+ (Nannochloropsis oceanica) ATGAAGCTCCGGCAACATCATGCCAAAGGCATCGTGCTCGTGACGGCAGC CGTTGCCGGGGTATTCTCGATGCTGGCTACCTACATCGCGGTGGCCAGGA GCCGGAAAGGGAAGCGCATCGGAAGCTGCAACAAACCTCAAGCTCTGCCA CAACAGGAGCAGCCACTGAAGGGAAGCGAAGACGCGGCCTGCGTGGTGGA GCGGGACCTCAGGAAGCAAAGCCCCCCCCTCACCGCCGTGCCCCGCGAGG TACTGCAACTCCATACCCTCCGCCAACTCAACCTCATGGGCAATGCCTTG GTCTCTCTCCCCACAGAGATCGGCGGTCTGACACAGCTGCGAATTTTGGG GCTGACCGACAATAACCTGACGGCCTTGCCGGACTCCATTGGTTGCCTCA ACGAGCTGGTGGCGTTGTACGTGACCAACAACAAGCTCACCCACTTCCCA CCCAGCATTGGGCAGCTCGCCAGCCTCCGCAAGTTCCAAGCTTCCTTTAA TGCCCTCCAGGCCTTACCCGAAGAAATGGCGGACATGCGTTCCCTGGAAC TCTTCCGCGCTGCGGGGAACCCAGACCTGGCTTCCATTCCTCCCGCTCTC GCCAAGGCTCCTGCTTTAACCTGGCTTTCTCTGGGAGGGTCAAAATTCTG CGCCTCCTTCTCCAAGAATGACCCGGCATCAGAAGATGAGCAGGAGCAGC ATGACGCAGCGTGGTGGTCGGCGACAACGTCGTCGTCGTCGACGACAGAA GGTCGTAGAAGCAGCAGCAGGAAGAGCAGTAGCGTCCTTCCTTTGGTCGA ACGTCGGTCTTTGACACTCGCACAAAAGCTGGGCGATGGTGCATCCGGGG AGGTCTTCCTGTCACAATGGCACCCGATCGCTTTTGCCTCGTCTTGCTCC TCCTCCTCCTCCTTTTCCTCCCTGAAAAACAAGCTGACTCCCGAGAAGCT CAAGAAAAAGACGGAGAAAAAAAACGAAGCTCAAAAAGTGGCCGTCAAAA TCTTCCGCAACGACACCTCGCCAGACGGCCGCGCCATCGACGAACTTGAA ATACTCTGTCTTTTAGAGCATCCCAATCTTAGCAAAGTCCGCGCTTTGCT CCTAGACGACAACGACGACACCCTTCCTTCCCTCCCTCCTTCTCGTCCTC GTCCTCCCGTTGGCGTGGTAATGGACTTCATCGCCGGCCAGCCTCTCGCG GCCAAGCCCAACCACACAAGCATGCTCCGGTGTCGGTGGGAGGAAGGAAA GACCTACCCCCTCCGAGTAGTCCTGCGCTTGGCCCAGGACGTGACTGGGG CACTACGACACTTGCACGAGAAGCAGATTTGTCACGGGGATGTGTACGCG CATAATTGTTTGATGGATGAAGAGGGGAACACGACGCTAGTAGATTATGG GGCGAGTTTCATGTATGGGGGAGGGGAGGATGGAGGGAGAGGGGGAGGGG AAGGTGGGATGGATTTTGAAAAATTGGAGGTGCGAGCGTTTGGGCTCTTG TTGAGAGATTTGATGGAGAGGGTGAAGGGGAAGGGATGGGGGGAGGAAGA GGGGGGGGGGATGGGAAGGGGCACGATTTCCGGGCGACAGCACTGA back to top
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