NO08G00750.1, NO08G00750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00750.1
Unique NameNO08G00750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1356
Alignment locationchr8:252027..253382 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:252027..253382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00750.1 vs.
Match: EWM26557.1 (rhodanese domain protein [Nannochloropsis gaditana])

HSP 1 Score: 479.6 bits (1233), Expect = 9.700e-132
Identity = 237/335 (70.75%), Postives = 272/335 (81.19%), Query Frame = 0 
Query:   60 MRASGDSNDAPTLPGLVTTAWLAAHIDDEDLAILDVRGEVAKAAVEDGKQLTEYKALFGDYVDAHIPHAAFVDWTKDIAYTDDAGVPVQLLELDELRTTLESKGVGLRKRVVVYDGGNLLFATRLWWALRLAGHQAVAVLDGGYAKWLAEDRKITVDAPCPLKINEMWESETVATSVVEFAVGSSSPPFLSSRVDADFVLRSCVQASPDEIDRVQVIDARSHDQFLGRVSRSLRAGHIPKARSVPYKDLLAPPETHPETSLSYRVMKSKAELEDTLREAGVSVDAATMPLTCVYCNGGVASTVVIFVLNQLFGMQTKNYDGSWNEWGKREDLPVS 395
            ++A+  S D P LPGLVTT WLA H+DDEDLAILDVRGEVAKA V +G Q +EY AL GDYVDAHIP+AAFVDW  DIAYTDDAGVPVQ+L LD+ R  +ES+GVGLRKRVV+YD GN LFATRLWWALR+AGHQAVA+LDGG+ KWLAED  +T DAPCPLKINE WESE +ATSV     G+  P FLSSRV+A  VL+ C + S  E   VQ+IDARS +Q++GR+SRS RAGHIP+ARS+PYKDLL PP  HP +   YR++KSK  LE TLREAGVS+D    PLTCVYCNGGVASTVVIFVLNQL+GM+T N+DGSWNEWGKRED PVS
Sbjct:   86 LQAASRSIDVPDLPGLVTTEWLADHVDDEDLAILDVRGEVAKAPVTNGTQESEYIALKGDYVDAHIPNAAFVDWIDDIAYTDDAGVPVQILPLDDFRVCMESRGVGLRKRVVIYDNGNFLFATRLWWALRIAGHQAVAILDGGWNKWLAEDWPVTADAPCPLKINEAWESEFIATSV----DGAMIPSFLSSRVNASQVLQFCQEDSGSE--NVQIIDARSREQYMGRISRSSRAGHIPRARSLPYKDLLTPPIVHPLSRHPYRLIKSKDALELTLREAGVSIDGQATPLTCVYCNGGVASTVVIFVLNQLYGMRTSNFDGSWNEWGKREDFPVS 414
The following BLAST results are available for this feature:
BLAST of NO08G00750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26557.19.700e-13270.75rhodanese domain protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00750NO08G00750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00750.1NO08G00750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00750.1.cds1NO08G00750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00750.1 ID=NO08G00750.1|Name=NO08G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp
AGTAGAAGCGAAGTATCTCGCGCTCCTCGACACGCAGCAAAGTCTTCATC
TTGCTTGTTCCAGATGCCGCGGCCCCTCGTAGCGTTCCTCTTCCCCTGCT
GTTACCTGAGGTCCAGCGCCTTTACCCATTCCGGGCCTTTCTCCCTGCTA
CCATCGTTTGGGTCGTCATGCCGCATGTCGTCCAACCTCCAGCCCAATCA
ACCTTGCCACATCCCGGTTCCCGTGGCGGGCACCATTTTCATGAGAGCCT
CTGGTGACAGCAACGATGCACCCACATTACCAGGCCTCGTCACCACCGCA
TGGCTGGCCGCACACATTGATGACGAAGATCTTGCTATCCTGGATGTGAG
AGGAGAAGTTGCCAAGGCCGCGGTAGAGGACGGGAAGCAATTAACAGAAT
ACAAGGCTTTGTTTGGCGACTACGTGGACGCGCACATCCCCCACGCCGCT
TTCGTCGATTGGACCAAGGATATTGCCTACACTGATGATGCAGGTGTGCC
TGTGCAACTCCTCGAGTTAGACGAACTTCGCACCACACTAGAGTCTAAAG
GAGTGGGACTGCGAAAACGTGTGGTGGTTTACGACGGGGGCAACTTACTA
TTTGCGACGCGCCTGTGGTGGGCTTTGCGTTTGGCGGGGCATCAGGCCGT
CGCTGTGTTGGATGGTGGATATGCCAAATGGCTGGCGGAGGACCGAAAAA
TTACAGTAGACGCGCCATGCCCTCTGAAAATAAATGAAATGTGGGAGAGT
GAGACCGTGGCCACATCTGTCGTTGAATTCGCCGTCGGTTCTTCCTCTCC
TCCCTTTCTCTCCTCCCGTGTGGACGCCGACTTTGTCTTGAGATCCTGCG
TGCAAGCATCTCCAGATGAGATAGATAGAGTGCAAGTTATCGACGCCCGT
AGCCATGATCAGTTCCTGGGAAGGGTGAGTCGTAGTTTACGTGCTGGTCA
TATCCCTAAGGCGCGTTCTGTGCCTTACAAAGACTTGCTGGCACCCCCAG
AAACACACCCCGAGACATCATTATCATATCGGGTGATGAAATCAAAGGCA
GAGTTGGAGGATACATTGCGAGAGGCGGGTGTAAGTGTGGATGCAGCGAC
GATGCCTTTAACGTGTGTGTATTGTAATGGTGGCGTGGCCTCGACAGTGG
TTATTTTTGTGTTAAATCAGTTGTTTGGGATGCAGACCAAGAATTATGAT
GGATCATGGAATGAGTGGGGAAAGCGGGAGGATCTGCCTGTGTCGGTAGC
TAAGGAAGAATGATTTGATGGGTGCGCAGAAAGAAGGGAGAGGAAACGAA
ATGAGGTGGACTAAGCAAAGCCTTAAAAAAATGCAAGAAATGAAAGAAAT
GAGAGC
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protein sequence of NO08G00750.1

>NO08G00750.1-protein ID=NO08G00750.1-protein|Name=NO08G00750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=400bp
MPRPLVAFLFPCCYLRSSAFTHSGPFSLLPSFGSSCRMSSNLQPNQPCHI
PVPVAGTIFMRASGDSNDAPTLPGLVTTAWLAAHIDDEDLAILDVRGEVA
KAAVEDGKQLTEYKALFGDYVDAHIPHAAFVDWTKDIAYTDDAGVPVQLL
ELDELRTTLESKGVGLRKRVVVYDGGNLLFATRLWWALRLAGHQAVAVLD
GGYAKWLAEDRKITVDAPCPLKINEMWESETVATSVVEFAVGSSSPPFLS
SRVDADFVLRSCVQASPDEIDRVQVIDARSHDQFLGRVSRSLRAGHIPKA
RSVPYKDLLAPPETHPETSLSYRVMKSKAELEDTLREAGVSVDAATMPLT
CVYCNGGVASTVVIFVLNQLFGMQTKNYDGSWNEWGKREDLPVSVAKEE*
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mRNA from alignment at chr8:252027..253382+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00750.1 ID=NO08G00750.1|Name=NO08G00750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1356bp|location=Sequence derived from alignment at chr8:252027..253382+ (Nannochloropsis oceanica)
AGTAGAAGCGAAGTATCTCGCGCTCCTCGACACGCAGCAAAGTCTTCATC
TTGCTTGTTCCAGATGCCGCGGCCCCTCGTAGCGTTCCTCTTCCCCTGCT
GTTACCTGAGGTCCAGCGCCTTTACCCATTCCGGGCCTTTCTCCCTGCTA
CCATCGTTTGGGTCGTCATGCCGCATGTCGTCCAACCTCCAGCCCAATCA
ACCTTGCCACATCCCGGTTCCCGTGGCGGGCACCATTTTCATGAGAGCCT
CTGGTGACAGCAACGATGCACCCACATTACCAGGCCTCGTCACCACCGCA
TGGCTGGCCGCACACATTGATGACGAAGATCTTGCTATCCTGGATGTGAG
AGGAGAAGTTGCCAAGGCCGCGGTAGAGGACGGGAAGCAATTAACAGAAT
ACAAGGCTTTGTTTGGCGACTACGTGGACGCGCACATCCCCCACGCCGCT
TTCGTCGATTGGACCAAGGATATTGCCTACACTGATGATGCAGGTGTGCC
TGTGCAACTCCTCGAGTTAGACGAACTTCGCACCACACTAGAGTCTAAAG
GAGTGGGACTGCGAAAACGTGTGGTGGTTTACGACGGGGGCAACTTACTA
TTTGCGACGCGCCTGTGGTGGGCTTTGCGTTTGGCGGGGCATCAGGCCGT
CGCTGTGTTGGATGGTGGATATGCCAAATGGCTGGCGGAGGACCGAAAAA
TTACAGTAGACGCGCCATGCCCTCTGAAAATAAATGAAATGTGGGAGAGT
GAGACCGTGGCCACATCTGTCGTTGAATTCGCCGTCGGTTCTTCCTCTCC
TCCCTTTCTCTCCTCCCGTGTGGACGCCGACTTTGTCTTGAGATCCTGCG
TGCAAGCATCTCCAGATGAGATAGATAGAGTGCAAGTTATCGACGCCCGT
AGCCATGATCAGTTCCTGGGAAGGGTGAGTCGTAGTTTACGTGCTGGTCA
TATCCCTAAGGCGCGTTCTGTGCCTTACAAAGACTTGCTGGCACCCCCAG
AAACACACCCCGAGACATCATTATCATATCGGGTGATGAAATCAAAGGCA
GAGTTGGAGGATACATTGCGAGAGGCGGGTGTAAGTGTGGATGCAGCGAC
GATGCCTTTAACGTGTGTGTATTGTAATGGTGGCGTGGCCTCGACAGTGG
TTATTTTTGTGTTAAATCAGTTGTTTGGGATGCAGACCAAGAATTATGAT
GGATCATGGAATGAGTGGGGAAAGCGGGAGGATCTGCCTGTGTCGGTAGC
TAAGGAAGAATGATTTGATGGGTGCGCAGAAAGAAGGGAGAGGAAACGAA
ATGAGGTGGACTAAGCAAAGCCTTAAAAAAATGCAAGAAATGAAAGAAAT
GAGAGC
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Coding sequence (CDS) from alignment at chr8:252027..253382+

>NO08G00750.1 ID=NO08G00750.1|Name=NO08G00750.1|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at chr8:252027..253382+ (Nannochloropsis oceanica)
ATGCCGCGGCCCCTCGTAGCGTTCCTCTTCCCCTGCTGTTACCTGAGGTC
CAGCGCCTTTACCCATTCCGGGCCTTTCTCCCTGCTACCATCGTTTGGGT
CGTCATGCCGCATGTCGTCCAACCTCCAGCCCAATCAACCTTGCCACATC
CCGGTTCCCGTGGCGGGCACCATTTTCATGAGAGCCTCTGGTGACAGCAA
CGATGCACCCACATTACCAGGCCTCGTCACCACCGCATGGCTGGCCGCAC
ACATTGATGACGAAGATCTTGCTATCCTGGATGTGAGAGGAGAAGTTGCC
AAGGCCGCGGTAGAGGACGGGAAGCAATTAACAGAATACAAGGCTTTGTT
TGGCGACTACGTGGACGCGCACATCCCCCACGCCGCTTTCGTCGATTGGA
CCAAGGATATTGCCTACACTGATGATGCAGGTGTGCCTGTGCAACTCCTC
GAGTTAGACGAACTTCGCACCACACTAGAGTCTAAAGGAGTGGGACTGCG
AAAACGTGTGGTGGTTTACGACGGGGGCAACTTACTATTTGCGACGCGCC
TGTGGTGGGCTTTGCGTTTGGCGGGGCATCAGGCCGTCGCTGTGTTGGAT
GGTGGATATGCCAAATGGCTGGCGGAGGACCGAAAAATTACAGTAGACGC
GCCATGCCCTCTGAAAATAAATGAAATGTGGGAGAGTGAGACCGTGGCCA
CATCTGTCGTTGAATTCGCCGTCGGTTCTTCCTCTCCTCCCTTTCTCTCC
TCCCGTGTGGACGCCGACTTTGTCTTGAGATCCTGCGTGCAAGCATCTCC
AGATGAGATAGATAGAGTGCAAGTTATCGACGCCCGTAGCCATGATCAGT
TCCTGGGAAGGGTGAGTCGTAGTTTACGTGCTGGTCATATCCCTAAGGCG
CGTTCTGTGCCTTACAAAGACTTGCTGGCACCCCCAGAAACACACCCCGA
GACATCATTATCATATCGGGTGATGAAATCAAAGGCAGAGTTGGAGGATA
CATTGCGAGAGGCGGGTGTAAGTGTGGATGCAGCGACGATGCCTTTAACG
TGTGTGTATTGTAATGGTGGCGTGGCCTCGACAGTGGTTATTTTTGTGTT
AAATCAGTTGTTTGGGATGCAGACCAAGAATTATGATGGATCATGGAATG
AGTGGGGAAAGCGGGAGGATCTGCCTGTGTCGGTAGCTAAGGAAGAATGA
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Synonyms
Publications