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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:240916..243529 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00720.1 vs.
Match: CBN73876.1 (hypothetical protein Esi_0007_0204 [Ectocarpus siliculosus]) HSP 1 Score: 86.3 bits (212), Expect = 4.600e-13 Identity = 154/537 (28.68%), Postives = 222/537 (41.34%), Query Frame = 0
Query: 231 GGDGGRRSPPEMDIEDDDGDLVEEAEEERGKGKEED--VELEEIETEDALVG--FASGGGGDDDGDDLGDDGEGHSLGVGGGRGGGAPAPPPPPERWAYLEEIDSEEE----------------PDWVAAYAALEEGIEDPPEERRVESREEAWAILRQAWARAAIPPPPAAAAVGGGSS-SSAMDKKKESERVHKTAGFGEEEENGE--EEEESVVISPFHRQSKAAARRELYHHFLQDLNTDTRTLG-GKHWLDRDALIHLRGTALLCQQPEYIDLLSSLAPTRSFARGMRLAVPTSTHGMQEALAAALAHSVGAVLIVADHRRIAAVRRMALDAGVPKKFLGAGMVMGALIEMAEGEGQEEGGEGKEEGVDPRSSPLVIFLADKARPFLQSKQVTDALFTALVSKESTSFFLLSSEYDPDSLLPPLPPLS-SSSVPHHHIPQHGG-------LLAPPPP---TTGEGGGAGG----------EGLPDMSSLSGGGGGGGEGGRSLPSGIPMPWPPGMMSSPSSHQQGGGGGGGG 723
GG + D ED D ++ ++E G +D + E E E +L+G SG G G + + G GRGGG E A + + +EE P A A L EG+ +++ +E+ W R A AAA G G S D+ + V+ G G E +G ++E S+ + LY L ++ + + G W+DRDAL+ LRG A L P+Y+ ++L RG+RL P +TH MQEALA +L HS G+ L+ D + I AVR AL G+PK+ L + + AL+E+A G+++ SP ++FL DK L+S+ + L L ++ S FLLS+ DP LP PP PQ GG L PP P + G+ + G + P + G GGGGG GG G P+ +GGGGGGGG
Sbjct: 171 GGGSDSQEDDTDDSEDRSEDGHDDDDDEDGDDSYDDGSYDSHEEEMEASLMGDEVRSGSSGGVAGSSMSRESSEARSRRGRGRGGG--------EISALANKYEDDEEACFTRVKELWHDRVLLPLSQAEVAELSEGVR-ADQKKLMEAAPTEW---NSGPGRTAKEAALAAAKKGAGRRRDSGEDEMAQPAAVNDRPGGGGEAGSGVVVDDESSLGL--------------LYRLLLAEMQGNGSSGGLNNRWIDRDALLQLRGAATLAHHPKYLRHTANLPRV---TRGVRLVAPEATHSMQEALARSLGHSTGSRLLFLDAKAIEAVRGQALAEGIPKEHLTSRQLASALLELA---GEDD-------------SPYLVFLMDKGSAVLKSRGMCQRLTEELKNESSRVLFLLSTASDPS--LPGNPPAGPGDDASSQDDPQQGGGGMFGSPLQWPPQPHGMSPGQSKRSDGSPKKNYIFLHQNQPGGGAPDGSGGGGGGGGGGSFFG----------GRPNRGGRGGGGGGGG 650
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00720.1 ID=NO08G00720.1|Name=NO08G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2614bp ACAGGAAGTCCTGATTTGAAAGCGTCGTCTTCCTTGCATTGCTGTGGCAC CTTGCGCAGGGAATTTTGTGGCGGGGTACGATTGATCTGAGCGGCCAAGG CGCGTGTATATACAGTGCAGGAGCTGCGGCGACCAGAAACGGCTGCAGCA GTATTGCGATCCGAGATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGC AGCAGCAGCAGCAGCAGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCA GGAAAAGATATGATGCGGTCAGCAAGACAAGTGAAATGTCAACAATGAAG AGCGACGGGAAAAGCCTCACGTCATTCCTTCCCACGGCAAGTGTAGCTAT CGTGCTGTTTTGTGCCTTCTTTGCCTCGCATGTCCCAAGGACTGAGGCCC GTTCGACGCTCTCGGTCTCGGCGACAGCAGGAGCAGGAGGAGCGGCCGCA CTAGGCAACAATGGAGGACGCGGATGGAGTATTTTGCCTTCTGTATTCCA GAAAAGTCAGAAGCAGCAGCAGCAGCAGCAGGAAATGGAGGACATTACCT TGCCGTCGTGGTGGGGCCGGGTGATTGCACGCCGCGGAGGCGCCTTTGGA CGCAGCAAGAAGAACGCCGCGGCAGCCGCAGCTGCAGCTGCCAAGGAGGC CAAGACAGCCGTTGGTGCAGCAGCAGCGATAGCACGCAAGGATCAAGAGG AGGCTTCGAAGGCCACCACTGCTGTTGGGGCTGCTGCTGCTGCTGTTGCA AGTGTCTGGGAAAAGAATGGTGCGAAGCCGGTGGAGCCCGCGGTCTATAG TCGCGATGCTCCTACCCTGTCTTCTTCCCCCTCTTTCGCTCCTACAACCA CTGTGGGAGGGGATGGTGGGCGTCGCAGCCCACCGGAAATGGACATCGAA GACGACGATGGGGACCTGGTGGAGGAAGCGGAGGAGGAAAGGGGGAAGGG GAAGGAGGAGGACGTGGAACTCGAGGAAATTGAGACGGAGGACGCCTTGG TAGGGTTTGCCTCTGGAGGGGGAGGAGATGACGATGGCGACGATTTGGGT GATGATGGAGAGGGGCATTCTCTAGGTGTCGGGGGAGGGCGAGGGGGAGG AGCACCTGCTCCTCCCCCCCCGCCGGAGCGATGGGCTTACCTGGAGGAAA TTGATTCGGAGGAGGAGCCAGATTGGGTGGCGGCATACGCGGCCTTGGAA GAAGGGATCGAGGACCCGCCGGAGGAGAGGAGGGTTGAGTCAAGGGAGGA GGCCTGGGCTATCCTGCGACAGGCATGGGCGAGGGCGGCCATTCCGCCCC CTCCTGCTGCTGCCGCCGTTGGGGGTGGGAGCAGCAGTAGTGCTATGGAC AAAAAGAAGGAGAGCGAGAGGGTCCACAAAACTGCAGGCTTCGGCGAGGA AGAAGAAAACGGGGAGGAAGAAGAAGAATCCGTCGTCATCTCCCCCTTTC ACCGTCAATCCAAAGCCGCGGCGCGTCGTGAGCTGTACCATCACTTTCTC CAGGATTTAAACACCGACACCCGTACATTGGGAGGGAAGCATTGGTTGGA CCGCGACGCCCTTATCCACCTACGAGGCACGGCCTTACTCTGTCAACAAC CCGAGTATATCGACCTCCTCTCCTCCCTTGCTCCCACGCGTTCGTTTGCC CGAGGGATGCGCCTGGCCGTGCCGACTTCCACGCACGGGATGCAGGAGGC CTTGGCAGCAGCGCTGGCACATTCGGTCGGCGCGGTATTAATTGTGGCCG ACCATCGGCGCATTGCAGCCGTGAGGCGCATGGCATTGGATGCCGGGGTC CCGAAGAAGTTTTTGGGGGCAGGGATGGTGATGGGTGCGTTAATTGAGAT GGCAGAGGGGGAAGGGCAGGAGGAGGGAGGGGAAGGAAAGGAGGAGGGGG TAGACCCACGATCGTCGCCGCTGGTGATCTTCTTGGCTGACAAGGCGAGG CCTTTCCTTCAGAGCAAACAGGTGACAGACGCCTTATTTACAGCCCTGGT GTCCAAGGAGAGCACCTCTTTCTTTCTCCTCTCCTCGGAGTATGACCCTG ATTCCCTCCTTCCCCCCCTTCCTCCCTTGTCGTCCTCTTCTGTGCCTCAT CATCACATCCCTCAGCACGGAGGATTACTGGCGCCACCACCGCCAACGAC CGGTGAAGGAGGTGGGGCAGGAGGGGAGGGGCTGCCCGACATGAGTTCTC TCTCGGGAGGAGGAGGGGGAGGGGGAGAGGGAGGGAGAAGTCTGCCTTCT GGAATCCCCATGCCGTGGCCGCCGGGAATGATGTCTTCGCCTTCATCTCA TCAACAGGGAGGAGGGGGAGGGGGAGGGGGAGGGGCGTTCCCACCCAAGG GGCCTGTGCTGCATGTTCTGATCCGGCCGAGTATGGTGCCGGCTGCTCCT ACGGGAGGGGGGGTGGAGGAGGAGCAGCAGCGGCTGGGAACGGAACGGTA GGAGTGCAGGGTCTTTTCCCATCAAGTGCGTCCTTAGGGGGAGCGTCGGG ATTTGCTCCGTTGTTGAAGAAGACAGTGGCAGAGTTGGCAGAGCATTTTC ATGAGCTGAGTAAGGAGAGGCTGGTGATGGGGCAGGAGGGGAAGGAGGGA GGGAGGAAGGGGGG back to topprotein sequence of NO08G00720.1 >NO08G00720.1-protein ID=NO08G00720.1-protein|Name=NO08G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=762bp MKPQQLEGGSGAAAAAAAAASWKMATNSRKRYDAVSKTSEMSTMKSDGKS LTSFLPTASVAIVLFCAFFASHVPRTEARSTLSVSATAGAGGAAALGNNG GRGWSILPSVFQKSQKQQQQQQEMEDITLPSWWGRVIARRGGAFGRSKKN AAAAAAAAAKEAKTAVGAAAAIARKDQEEASKATTAVGAAAAAVASVWEK NGAKPVEPAVYSRDAPTLSSSPSFAPTTTVGGDGGRRSPPEMDIEDDDGD LVEEAEEERGKGKEEDVELEEIETEDALVGFASGGGGDDDGDDLGDDGEG HSLGVGGGRGGGAPAPPPPPERWAYLEEIDSEEEPDWVAAYAALEEGIED PPEERRVESREEAWAILRQAWARAAIPPPPAAAAVGGGSSSSAMDKKKES ERVHKTAGFGEEEENGEEEEESVVISPFHRQSKAAARRELYHHFLQDLNT DTRTLGGKHWLDRDALIHLRGTALLCQQPEYIDLLSSLAPTRSFARGMRL AVPTSTHGMQEALAAALAHSVGAVLIVADHRRIAAVRRMALDAGVPKKFL GAGMVMGALIEMAEGEGQEEGGEGKEEGVDPRSSPLVIFLADKARPFLQS KQVTDALFTALVSKESTSFFLLSSEYDPDSLLPPLPPLSSSSVPHHHIPQ HGGLLAPPPPTTGEGGGAGGEGLPDMSSLSGGGGGGGEGGRSLPSGIPMP WPPGMMSSPSSHQQGGGGGGGGGAFPPKGPVLHVLIRPSMVPAAPTGGGV EEEQQRLGTER* back to topmRNA from alignment at chr8:240916..243529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00720.1 ID=NO08G00720.1|Name=NO08G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=2614bp|location=Sequence derived from alignment at chr8:240916..243529- (Nannochloropsis oceanica) ACAGGAAGTCCTGATTTGAAAGCGTCGTCTTCCTTGCATTGCTGTGGCAC
CTTGCGCAGGGAATTTTGTGGCGGGGTACGATTGATCTGAGCGGCCAAGG
CGCGTGTATATACAGTGCAGGAGCTGCGGCGACCAGAAACGGCTGCAGCA
GTATTGCGATCCGAGATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGC
AGCAGCAGCAGCAGCAGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCA
GGAAAAGATATGATGCGGTCAGCAAGACAAGTGAAATGTCAACAATGAAG
AGCGACGGGAAAAGCCTCACGTCATTCCTTCCCACGGCAAGTGTAGCTAT
CGTGCTGTTTTGTGCCTTCTTTGCCTCGCATGTCCCAAGGACTGAGGCCC
GTTCGACGCTCTCGGTCTCGGCGACAGCAGGAGCAGGAGGAGCGGCCGCA
CTAGGCAACAATGGAGGACGCGGATGGAGTATTTTGCCTTCTGTATTCCA
GAAAAGTCAGAAGCAGCAGCAGCAGCAGCAGGAAATGGAGGACATTACCT
TGCCGTCGTGGTGGGGCCGGGTGATTGCACGCCGCGGAGGCGCCTTTGGA
CGCAGCAAGAAGAACGCCGCGGCAGCCGCAGCTGCAGCTGCCAAGGAGGC
CAAGACAGCCGTTGGTGCAGCAGCAGCGATAGCACGCAAGGATCAAGAGG
AGGCTTCGAAGGCCACCACTGCTGTTGGGGCTGCTGCTGCTGCTGTTGCA
AGTGTCTGGGAAAAGAATGGTGCGAAGCCGGTGGAGCCCGCGGTCTATAG
TCGCGATGCTCCTACCCTGTCTTCTTCCCCCTCTTTCGCTCCTACAACCA
CTGTGGGAGGGGATGGTGGGCGTCGCAGCCCACCGGAAATGGACATCGAA
GACGACGATGGGGACCTGGTGGAGGAAGCGGAGGAGGAAAGGGGGAAGGG
GAAGGAGGAGGACGTGGAACTCGAGGAAATTGAGACGGAGGACGCCTTGG
TAGGGTTTGCCTCTGGAGGGGGAGGAGATGACGATGGCGACGATTTGGGT
GATGATGGAGAGGGGCATTCTCTAGGTGTCGGGGGAGGGCGAGGGGGAGG
AGCACCTGCTCCTCCCCCCCCGCCGGAGCGATGGGCTTACCTGGAGGAAA
TTGATTCGGAGGAGGAGCCAGATTGGGTGGCGGCATACGCGGCCTTGGAA
GAAGGGATCGAGGACCCGCCGGAGGAGAGGAGGGTTGAGTCAAGGGAGGA
GGCCTGGGCTATCCTGCGACAGGCATGGGCGAGGGCGGCCATTCCGCCCC
CTCCTGCTGCTGCCGCCGTTGGGGGTGGGAGCAGCAGTAGTGCTATGGAC
AAAAAGAAGGAGAGCGAGAGGGTCCACAAAACTGCAGGCTTCGGCGAGGA
AGAAGAAAACGGGGAGGAAGAAGAAGAATCCGTCGTCATCTCCCCCTTTC
ACCGTCAATCCAAAGCCGCGGCGCGTCGTGAGCTGTACCATCACTTTCTC
CAGGATTTAAACACCGACACCCGTACATTGGGAGGGAAGCATTGGTTGGA
CCGCGACGCCCTTATCCACCTACGAGGCACGGCCTTACTCTGTCAACAAC
CCGAGTATATCGACCTCCTCTCCTCCCTTGCTCCCACGCGTTCGTTTGCC
CGAGGGATGCGCCTGGCCGTGCCGACTTCCACGCACGGGATGCAGGAGGC
CTTGGCAGCAGCGCTGGCACATTCGGTCGGCGCGGTATTAATTGTGGCCG
ACCATCGGCGCATTGCAGCCGTGAGGCGCATGGCATTGGATGCCGGGGTC
CCGAAGAAGTTTTTGGGGGCAGGGATGGTGATGGGTGCGTTAATTGAGAT
GGCAGAGGGGGAAGGGCAGGAGGAGGGAGGGGAAGGAAAGGAGGAGGGGG
TAGACCCACGATCGTCGCCGCTGGTGATCTTCTTGGCTGACAAGGCGAGG
CCTTTCCTTCAGAGCAAACAGGTGACAGACGCCTTATTTACAGCCCTGGT
GTCCAAGGAGAGCACCTCTTTCTTTCTCCTCTCCTCGGAGTATGACCCTG
ATTCCCTCCTTCCCCCCCTTCCTCCCTTGTCGTCCTCTTCTGTGCCTCAT
CATCACATCCCTCAGCACGGAGGATTACTGGCGCCACCACCGCCAACGAC
CGGTGAAGGAGGTGGGGCAGGAGGGGAGGGGCTGCCCGACATGAGTTCTC
TCTCGGGAGGAGGAGGGGGAGGGGGAGAGGGAGGGAGAAGTCTGCCTTCT
GGAATCCCCATGCCGTGGCCGCCGGGAATGATGTCTTCGCCTTCATCTCA
TCAACAGGGAGGAGGGGGAGGGGGAGGGGGAGGGGCGTTCCCACCCAAGG
GGCCTGTGCTGCATGTTCTGATCCGGCCGAGTATGGTGCCGGCTGCTCCT
ACGGGAGGGGGGGTGGAGGAGGAGCAGCAGCGGCTGGGAACGGAACGGTA
GGAGTGCAGGGTCTTTTCCCATCAAGTGCGTCCTTAGGGGGAGCGTCGGG
ATTTGCTCCGTTGTTGAAGAAGACAGTGGCAGAGTTGGCAGAGCATTTTC
ATGAGCTGAGTAAGGAGAGGCTGGTGATGGGGCAGGAGGGGAAGGAGGGA
GGGAGGAAGGGGGG back to topCoding sequence (CDS) from alignment at chr8:240916..243529- >NO08G00720.1 ID=NO08G00720.1|Name=NO08G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at chr8:240916..243529- (Nannochloropsis oceanica) ATGAAACCACAGCAGCTAGAGGGAGGATCAGGAGCAGCAGCAGCAGCAGC AGCAGCAGCAAGCTGGAAGATGGCGACCAACAGCAGGAAAAGATATGATG CGGTCAGCAAGACAAGTGAAATGTCAACAATGAAGAGCGACGGGAAAAGC CTCACGTCATTCCTTCCCACGGCAAGTGTAGCTATCGTGCTGTTTTGTGC CTTCTTTGCCTCGCATGTCCCAAGGACTGAGGCCCGTTCGACGCTCTCGG TCTCGGCGACAGCAGGAGCAGGAGGAGCGGCCGCACTAGGCAACAATGGA GGACGCGGATGGAGTATTTTGCCTTCTGTATTCCAGAAAAGTCAGAAGCA GCAGCAGCAGCAGCAGGAAATGGAGGACATTACCTTGCCGTCGTGGTGGG GCCGGGTGATTGCACGCCGCGGAGGCGCCTTTGGACGCAGCAAGAAGAAC GCCGCGGCAGCCGCAGCTGCAGCTGCCAAGGAGGCCAAGACAGCCGTTGG TGCAGCAGCAGCGATAGCACGCAAGGATCAAGAGGAGGCTTCGAAGGCCA CCACTGCTGTTGGGGCTGCTGCTGCTGCTGTTGCAAGTGTCTGGGAAAAG AATGGTGCGAAGCCGGTGGAGCCCGCGGTCTATAGTCGCGATGCTCCTAC CCTGTCTTCTTCCCCCTCTTTCGCTCCTACAACCACTGTGGGAGGGGATG GTGGGCGTCGCAGCCCACCGGAAATGGACATCGAAGACGACGATGGGGAC CTGGTGGAGGAAGCGGAGGAGGAAAGGGGGAAGGGGAAGGAGGAGGACGT GGAACTCGAGGAAATTGAGACGGAGGACGCCTTGGTAGGGTTTGCCTCTG GAGGGGGAGGAGATGACGATGGCGACGATTTGGGTGATGATGGAGAGGGG CATTCTCTAGGTGTCGGGGGAGGGCGAGGGGGAGGAGCACCTGCTCCTCC CCCCCCGCCGGAGCGATGGGCTTACCTGGAGGAAATTGATTCGGAGGAGG AGCCAGATTGGGTGGCGGCATACGCGGCCTTGGAAGAAGGGATCGAGGAC CCGCCGGAGGAGAGGAGGGTTGAGTCAAGGGAGGAGGCCTGGGCTATCCT GCGACAGGCATGGGCGAGGGCGGCCATTCCGCCCCCTCCTGCTGCTGCCG CCGTTGGGGGTGGGAGCAGCAGTAGTGCTATGGACAAAAAGAAGGAGAGC GAGAGGGTCCACAAAACTGCAGGCTTCGGCGAGGAAGAAGAAAACGGGGA GGAAGAAGAAGAATCCGTCGTCATCTCCCCCTTTCACCGTCAATCCAAAG CCGCGGCGCGTCGTGAGCTGTACCATCACTTTCTCCAGGATTTAAACACC GACACCCGTACATTGGGAGGGAAGCATTGGTTGGACCGCGACGCCCTTAT CCACCTACGAGGCACGGCCTTACTCTGTCAACAACCCGAGTATATCGACC TCCTCTCCTCCCTTGCTCCCACGCGTTCGTTTGCCCGAGGGATGCGCCTG GCCGTGCCGACTTCCACGCACGGGATGCAGGAGGCCTTGGCAGCAGCGCT GGCACATTCGGTCGGCGCGGTATTAATTGTGGCCGACCATCGGCGCATTG CAGCCGTGAGGCGCATGGCATTGGATGCCGGGGTCCCGAAGAAGTTTTTG GGGGCAGGGATGGTGATGGGTGCGTTAATTGAGATGGCAGAGGGGGAAGG GCAGGAGGAGGGAGGGGAAGGAAAGGAGGAGGGGGTAGACCCACGATCGT CGCCGCTGGTGATCTTCTTGGCTGACAAGGCGAGGCCTTTCCTTCAGAGC AAACAGGTGACAGACGCCTTATTTACAGCCCTGGTGTCCAAGGAGAGCAC CTCTTTCTTTCTCCTCTCCTCGGAGTATGACCCTGATTCCCTCCTTCCCC CCCTTCCTCCCTTGTCGTCCTCTTCTGTGCCTCATCATCACATCCCTCAG CACGGAGGATTACTGGCGCCACCACCGCCAACGACCGGTGAAGGAGGTGG GGCAGGAGGGGAGGGGCTGCCCGACATGAGTTCTCTCTCGGGAGGAGGAG GGGGAGGGGGAGAGGGAGGGAGAAGTCTGCCTTCTGGAATCCCCATGCCG TGGCCGCCGGGAATGATGTCTTCGCCTTCATCTCATCAACAGGGAGGAGG GGGAGGGGGAGGGGGAGGGGCGTTCCCACCCAAGGGGCCTGTGCTGCATG TTCTGATCCGGCCGAGTATGGTGCCGGCTGCTCCTACGGGAGGGGGGGTG GAGGAGGAGCAGCAGCGGCTGGGAACGGAACGGTAG back to top
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