NO08G00620.2, NO08G00620.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00620.2
Unique NameNO08G00620.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1428
Alignment locationchr8:221866..223698 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:221866..223698 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00620.2 vs.
Match: EWM26564.1 (putative methyltransferase wbscr22 [Nannochloropsis gaditana])

HSP 1 Score: 305.1 bits (780), Expect = 1.700e-79
Identity = 159/184 (86.41%), Postives = 171/184 (92.93%), Query Frame = 0 
Query:   20 MGQGLPFRAGCFDGAISISALQWLCYEDNKAHSAKARLMRFFSSLYTVLRRGARAALQFYPENSAQVLLITEAATRVGFQGGLVVDYPNSSKAKKYYLCLSFEHTYRVPRALTQEGGGGRAMTSVGVTERERAKQRGRKGKKGGKREAVKSRDWVLAKKEKQRSRGLNVREDSKYTARKRKDKL 204
            MGQGLPFRA CFDGA+SISALQWLCYED+KA SA ARLMRFF+SLYTVLRRGARAALQFYPENS QVLLIT+AATRVGFQGGLVVDYPNSSKAKKYYLCLSFEH+YRVP+AL +E GG RA+TSVGVTERER K RGRK  KGGKRE VKSR+WVLAKKEKQR +GL+VREDSKYTARKRKD+L
Sbjct:    1 MGQGLPFRAACFDGAVSISALQWLCYEDSKAQSANARLMRFFASLYTVLRRGARAALQFYPENSEQVLLITQAATRVGFQGGLVVDYPNSSKAKKYYLCLSFEHSYRVPQALGREEGG-RALTSVGVTERERVKPRGRK--KGGKREQVKSREWVLAKKEKQRRKGLDVREDSKYTARKRKDRL 181
The following BLAST results are available for this feature:
BLAST of NO08G00620.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26564.11.700e-7986.41putative methyltransferase wbscr22 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00620NO08G00620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00620.2NO08G00620.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00620.2.cds1NO08G00620.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00620.2.cds2NO08G00620.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00620.2.cds3NO08G00620.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00620.2 ID=NO08G00620.2|Name=NO08G00620.2|organism=Nannochloropsis oceanica|type=mRNA|length=1428bp
ACAACAACAAGCACAGGCATAATATATCCAGAACAAGTACACGGCCTGGA
GGGATGAGTCGTCCTGAGCGGCAAAACACGCCGCAAAATTACTACAATCC
AAAGGTACGGAGATGTGGTGTGGGGAGGTCGCCTCGTGTCGTGTGGGTGG
GCCGGTGGTGTCCTGGAAACGAGCCATGTTCACGTAGGAGGTGAGGGGCG
TGTGCCATGGTGAGATGTATAGGGTAATACAATGGGAATGTAGTCCCCGC
GACAGGAGGCGGCGTCCGGAACATGCGGATGGTCATGGCCAAGAACGATA
GCCTCCCCCACTCCGCCGACCCCTCGACACTCGAAAGTCCCACCAACCCA
CACAACGTTCTTCATCTCCTTAGCACTGACTGTCACATCGTTTATAAACT
CTCATGCATTCATTGAGCCAATCCTTTCAAAGCCCATCATCCTCAATACC
ACCACCACTTCCACCATACCTCACAGGAGGCGGCGAAGTACAACAGCTCC
TCGCGGATCATTGGCATCCAGAGTGAAATCACGGCCCGGGCTATTGAGCT
TTTAGCTCTTGAGCCAGGAAAGCGTACCCTTCTCCTCGACATTGGCTGCG
GCAGTGGCTTGAGTGGCGAGGCTATCGAAGAGGCAGGGCATGCATGGATT
GGATGTGATATTTCCAAGGACATGCTGGCCTTGGCGGCGGAGAAGGAGAC
CGACGGCGGCGACGTCTTCCAACGCGACATGGGCCAAGGCCTGCCATTTC
GAGCCGGCTGCTTCGATGGCGCCATCTCCATCTCGGCGCTGCAGTGGTTG
TGCTACGAGGATAACAAGGCCCATTCGGCCAAAGCGCGTCTGATGCGATT
CTTTTCATCGCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCTGCGTTGC
AGTTCTACCCAGAAAACTCTGCGCAAGTTTTGCTCATTACCGAGGCCGCC
ACCCGCGTCGGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCAACAGTAG
TAAAGCGAAGAAGTACTATTTGTGTCTCTCCTTTGAGCATACGTATCGCG
TGCCACGTGCGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAATGACAAGT
GTGGGGGTTACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGAAAGGAAA
GAAGGGAGGAAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTGTTGGCGA
AGAAGGAAAAGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGATAGCAAG
TACACGGCACGAAAGCGAAAGGACAAGCTCTAGGAGTTTAATGAGGGAGG
GGGGAGGTCAAGACTTGTACAGGAAAAAAAAAAGAGGGGGAGAAACGGAA
AGAAATAAGCCCAATCTCATGAATATTACGCACCATAGACTTGTGCAGCT
TGTCTTTGTATGGGGAGTGACTTCCCTA
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protein sequence of NO08G00620.2

>NO08G00620.2-protein ID=NO08G00620.2-protein|Name=NO08G00620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MLALAAEKETDGGDVFQRDMGQGLPFRAGCFDGAISISALQWLCYEDNKA
HSAKARLMRFFSSLYTVLRRGARAALQFYPENSAQVLLITEAATRVGFQG
GLVVDYPNSSKAKKYYLCLSFEHTYRVPRALTQEGGGGRAMTSVGVTERE
RAKQRGRKGKKGGKREAVKSRDWVLAKKEKQRSRGLNVREDSKYTARKRK
DKL*
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mRNA from alignment at chr8:221866..223698+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00620.2 ID=NO08G00620.2|Name=NO08G00620.2|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr8:221866..223698+ (Nannochloropsis oceanica)
ACAACAACAAGCACAGGCATAATATATCCAGAACAAGTACACGGCCTGGA
GGGATGAGTCGTCCTGAGCGGCAAAACACGCCGCAAAATTACTACAATCC
AAAGGTACGGAGATGTGGTGTGGGGAGGTCGCCTCGTGTCGTGTGGGTGG
GCCGGTGGTGTCCTGGAAACGAGCCATGTTCACGTAGGAGGTGAGGGGCG
TGTGCCATGGTGAGATGTATAGGGTAATACAATGGGAATGTAGTCCCCGC
GACAGGAGGCGGCGTCCGGAACATGCGGATGGTCATGGCCAAGAACGATA
GCCTCCCCCACTCCGCCGACCCCTCGACACTCGAAAGTCCCACCAACCCA
CACAACGTTCTTCATCTCCTTAGCACTGACTGTCACATCGTTTATAAACT
CTCATGCATTCATTGAGCCAATCCTTTCAAAGCCCATCATCCTCAATACC
ACCACCACTTCCACCATACCTCACAGGAGGCGGCGAAGTACAACAGCTCC
TCGCGGATCATTGGCATCCAGAGTGAAATCACGGCCCGGGCTATTGAGCT
TTTAGCTCTTGAGGTCAGTGTTGCTGTGACATGAATAAGATGCACATATT
ATTATCCTATACCTTCCGTGGGGCGCCTCTATTCTTATTCTTTCCCCCCT
CTCTTCCCCCTCCCCCTCCCCTTTTCAGCCAGGAAAGCGTACCCTTCTCC
TCGACATTGGCTGCGGCAGTGGCTTGAGTGGCGAGGCTATCGAAGAGGCA
GGGCATGCATGGATTGGATGTGATATTTCCAAGGACATGCTGGCCTTGGC
GGCGGAGAAGGAGACCGACGGCGGGTGGGTTAGGGGGGCAGGGAGGGAGA
GGGAGACATTCTTGACCTGAGATAAAATGTTGACGTGACGACACGACGAC
ATGCGAAATCGAGCAACTTGTTCATCTCATGCTATTTCGTCCTCCATCCT
CTCCTCTATAAGCGACGTCTTCCAACGCGACATGGGCCAAGGCCTGCCAT
TTCGAGCCGGCTGCTTCGATGGCGCCATCTCCATCTCGGCGCTGCAGTGG
TTGTGCTACGAGGATAACAAGGCCCATTCGGCCAAAGCGCGTCTGATGCG
ATTCTTTTCATCGCTTTACACGGTTTTGCGGAGGGGGGCAAGGGCTGCGT
TGCAGTTCTACCCAGGTAGGGTTTAGCATTTCCTCCCTCCCTCCCTCTCT
CCCTCCCTTCGTTTTATTTTTAATGGATACTTGATATCATGCCCCTCTGT
GCCGCATCCCTTCGTTTTTTCCCAATCAAACATTGTCCTTCCCTTGCCTT
CGATTAACCTCTCTCAGAAAACTCTGCGCAAGTTTTGCTCATTACCGAGG
CCGCCACCCGCGTCGGGTTCCAAGGCGGGCTCGTCGTCGACTATCCCAAC
AGTAGTAAAGCGAAGAAGTACTATTTGTGTCTCTCCTTTGAGCATACGTA
TCGCGTGCCACGTGCGTTGACGCAGGAAGGAGGCGGAGGGCGGGCAATGA
CAAGTGTGGGGGTTACTGAGCGAGAGAGGGCGAAACAGCGGGGGAGGAAA
GGAAAGAAGGGAGGAAAGCGGGAGGCTGTCAAGAGCAGGGATTGGGTGTT
GGCGAAGAAGGAAAAGCAACGCTCAAGGGGCTTGAATGTGCGGGAGGATA
GCAAGTACACGGCACGAAAGCGAAAGGACAAGCTCTAGGAGTTTAATGAG
GGAGGGGGGAGGTCAAGACTTGTACAGGAAAAAAAAAAGAGGGGGAGAAA
CGGAAAGAAATAAGCCCAATCTCATGAATATTACGCACCATAGACTTGTG
CAGCTTGTCTTTGTATGGGGAGTGACTTCCCTA
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Coding sequence (CDS) from alignment at chr8:221866..223698+

>NO08G00620.2 ID=NO08G00620.2|Name=NO08G00620.2|organism=Nannochloropsis oceanica|type=CDS|length=612bp|location=Sequence derived from alignment at chr8:221866..223698+ (Nannochloropsis oceanica)
ATGCTGGCCTTGGCGGCGGAGAAGGAGACCGACGGCGGCGACGTCTTCCA
ACGCGACATGGGCCAAGGCCTGCCATTTCGAGCCGGCTGCTTCGATGGCG
CCATCTCCATCTCGGCGCTGCAGTGGTTGTGCTACGAGGATAACAAGGCC
CATTCGGCCAAAGCGCGTCTGATGCGATTCTTTTCATCGCTTTACACGGT
TTTGCGGAGGGGGGCAAGGGCTGCGTTGCAGTTCTACCCAGAAAACTCTG
CGCAAGTTTTGCTCATTACCGAGGCCGCCACCCGCGTCGGGTTCCAAGGC
GGGCTCGTCGTCGACTATCCCAACAGTAGTAAAGCGAAGAAGTACTATTT
GTGTCTCTCCTTTGAGCATACGTATCGCGTGCCACGTGCGTTGACGCAGG
AAGGAGGCGGAGGGCGGGCAATGACAAGTGTGGGGGTTACTGAGCGAGAG
AGGGCGAAACAGCGGGGGAGGAAAGGAAAGAAGGGAGGAAAGCGGGAGGC
TGTCAAGAGCAGGGATTGGGTGTTGGCGAAGAAGGAAAAGCAACGCTCAA
GGGGCTTGAATGTGCGGGAGGATAGCAAGTACACGGCACGAAAGCGAAAG
GACAAGCTCTAG
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Synonyms
Publications