NO08G00600.1, NO08G00600.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00600.1
Unique NameNO08G00600.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1266
Alignment locationchr8:217004..219119 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:217004..219119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G00600.1 vs.
Match: EWM26545.1 (g protein-coupled receptor kinase 1 [Nannochloropsis gaditana])

HSP 1 Score: 556.6 bits (1433), Expect = 6.600e-155
Identity = 255/306 (83.33%), Postives = 281/306 (91.83%), Query Frame = 0
Query:   81 MKVMNKRRVKAHQSETLCWNERRVLSLVDSPFVVCLRYAFTSREDLFLILDLMRGGDLAFHLDKRGRFSMDEARYFASRTVLGLMHLHQNGIVYRDLKPDNILMDESGKTRLSDLGLACRVTPNLVGAYGTRGYWAPEMLTKDARGHRVRYTQAVDWFSFGCVLYEMIIGYSPFRSERIYDWAGLTKKDKHKAIDMAVVGMNPEYDRRYFDDDSIDLCRRLLEKNPHKRLGAGGGEEVMAHPWFYPGGVGGWDAFLADVAPPPFLPNQDINAASQSAIGSFSDEAQYRKIKIEEADQEVYEGWDWV 387
            MKVMNKRRVKAHQSE LCWNERR+LSLV SPFVVCL+YAFTS+EDLFLILDLMRGGDLAFHLDKRGRF+MDEARYFASRT+LGL HLHQNGIVYRDLKPDNILMDE GKTRLSDLGLAC+ +P LVGAYGTRGYWAPEML KDARGHR+RY+Q VDWFSFGCV+YEMI+GYSPFR++ IY W+GL KK+KHKAID+AVVGM+PE+DRRYFD+DSIDLCRRLLEK+P KRLGA GGE+VMAHPWF  GG   WD  +AD  PPPFLPNQDINAASQS IGSFSDE+QYRK+K+E+AD EVY GWDWV
Sbjct:    1 MKVMNKRRVKAHQSEKLCWNERRILSLVHSPFVVCLKYAFTSKEDLFLILDLMRGGDLAFHLDKRGRFTMDEARYFASRTLLGLKHLHQNGIVYRDLKPDNILMDEQGKTRLSDLGLACKASPGLVGAYGTRGYWAPEMLLKDARGHRIRYSQTVDWFSFGCVVYEMIVGYSPFRADCIYAWSGLGKKEKHKAIDLAVVGMDPEFDRRYFDEDSIDLCRRLLEKDPRKRLGARGGEDVMAHPWFRRGGASHWDTHMADSMPPPFLPNQDINAASQSVIGSFSDESQYRKMKMEDADHEVYAGWDWV 306          
The following BLAST results are available for this feature:
BLAST of NO08G00600.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26545.16.600e-15583.33g protein-coupled receptor kinase 1 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00600NO08G00600Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00600.1NO08G00600.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00600.1.cds1NO08G00600.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00600.1.cds2NO08G00600.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00600.1.cds3NO08G00600.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00600.1.cds4NO08G00600.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00600.1.cds5NO08G00600.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00600.1.cds6NO08G00600.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp
ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG
GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT
ACCACAAATACATCCAGTTCGTCTACATATCCAAAAAACCTGTCAACGAA
GACGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGT
GCATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCA
TGAACAAGCGCCGTGTCAAAGCCCACCAGTCAGAAACTCTCTGCTGGAAT
GAACGGAGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAG
GTACGCCTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGC
GAGGAGGAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATG
GATGAGGCCAGGTACTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCT
GCACCAAAACGGGATTGTCTATAGGGACCTGAAACCCGACAACATCCTTA
TGGACGAGTCGGGTAAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGC
GTTACGCCTAATCTGGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCC
GGAGATGCTGACGAAGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGG
CGGTGGATTGGTTCAGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGC
TACTCCCCCTTCCGTTCCGAGCGGATCTACGACTGGGCCGGCCTGACGAA
AAAAGACAAACACAAGGCCATCGACATGGCCGTGGTTGGCATGAACCCGG
AGTATGATCGAAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA
CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA
GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG
CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC
AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA
CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG
ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG
GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG
TTGTACGATAGCCTAA
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protein sequence of NO08G00600.1

>NO08G00600.1-protein ID=NO08G00600.1-protein|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MHLLSASLFDKVELLVWTFLSTHHGPAFFASPLYHKYIQFVYISKKPVNE
DDFVLFRTLGRGGFGQVHGCKRCQTGKLYAMKVMNKRRVKAHQSETLCWN
ERRVLSLVDSPFVVCLRYAFTSREDLFLILDLMRGGDLAFHLDKRGRFSM
DEARYFASRTVLGLMHLHQNGIVYRDLKPDNILMDESGKTRLSDLGLACR
VTPNLVGAYGTRGYWAPEMLTKDARGHRVRYTQAVDWFSFGCVLYEMIIG
YSPFRSERIYDWAGLTKKDKHKAIDMAVVGMNPEYDRRYFDDDSIDLCRR
LLEKNPHKRLGAGGGEEVMAHPWFYPGGVGGWDAFLADVAPPPFLPNQDI
NAASQSAIGSFSDEAQYRKIKIEEADQEVYEGWDWVNLPSFFAEVVLFLK
AEEVQGPITPRRSSEGCCTIA*
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mRNA from alignment at chr8:217004..219119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at chr8:217004..219119- (Nannochloropsis oceanica)
ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT ACCACAAATACATCCAGTTCGTCTACATATCCAAAGTACGCCCTCTCTCC CTCCCGCCCGCCCTCCCCCTTTCTTCCCTCGTTCTTCCTCTCCTTCATGT TGTCCTAAGGATATTTGTCCCTCCATCCCCCCGTCTCTCTATCCCTCCCT CCCTTCCTCCCACCTTTTCACCTTCGGACCCAGAAACCTGTCAACGAAGA CGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGTGC ATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCATG AACAAGCGCCGTGTCAAAGCCCACCAGTCAGGTGTGTGAGAGATCTCTTC TCCCTCCCTCCCTCCCCTCCTCCGTCCCCCCCTCCCTCCTTCACTCCCTC CCATCATTCCTTGACGCCAAGTCTACTCCCTCTCCTTTCTTTCCCTACCT CCCCCCCTTTCACCCGCCTACCACCAGAAACTCTCTGCTGGAATGAACGG AGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAGGTACGC CTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGCGAGGAG GAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATGGATGAG GCCAGGTAGTGAGGGAGGGAGGGGGGAGGGAGGGGGGGAGGAAGGGAGGG GTGCAGCTGTTCCTTTGTTTCGTGTCAACATAAATAATGTGACTCTTCAC ACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACACACACAC ACACACACACACACACACACACACACACACACACACACACACACACACAC ACATAACCCCCCCACACACGCACACCTACAACCATACACACGCACAGGTA CTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCTGCACCAAAACGGGA TTGTCTATAGGGACCTGAAACCCGACAACATCCTTATGGACGAGTCGGGT AAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGCGTTACGCCTAATCT GGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCCGGAGATGCTGACGA AGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGGCGGTGGATTGGTTC AGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGTGCGTTGGCCTCGCC CCCTCCATTTAGCCCTCCCTCTTCTCCTTCCTTTGTTCCTCCCTTCGTTT CTTTGAATTTTTGTGACTTCACGTCTCGCCCTCCCTCCCTCCTTCCCATT CGCCCTCCCTTCCCCTCGCAGGCTACTCCCCCTTCCGTTCCGAGCGGATC TACGACTGGGCCGGCCTGACGAAAAAAGACAAACACAAGGCCATCGACAT GGCCGTGGTTGGCATGAACCCGGAGTATGATCGAAGGTGAGAAAGGGAAG GAAGGGAGGAGGGAGGGAAGGAGGGAGGGATGACTTACGCAGAGTCGGTC GACCCTCTCGTTACCTTACCAAGCTCGGCACCCCTCCCTCCCTTCCTCCT TCTCCTATTCCAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG TTGTACGATAGCCTAA
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Coding sequence (CDS) from alignment at chr8:217004..219119-

>NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr8:217004..219119- (Nannochloropsis oceanica)
ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG
GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT
ACCACAAATACATCCAGTTCGTCTACATATCCAAAAAACCTGTCAACGAA
GACGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGT
GCATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCA
TGAACAAGCGCCGTGTCAAAGCCCACCAGTCAGAAACTCTCTGCTGGAAT
GAACGGAGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAG
GTACGCCTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGC
GAGGAGGAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATG
GATGAGGCCAGGTACTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCT
GCACCAAAACGGGATTGTCTATAGGGACCTGAAACCCGACAACATCCTTA
TGGACGAGTCGGGTAAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGC
GTTACGCCTAATCTGGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCC
GGAGATGCTGACGAAGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGG
CGGTGGATTGGTTCAGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGC
TACTCCCCCTTCCGTTCCGAGCGGATCTACGACTGGGCCGGCCTGACGAA
AAAAGACAAACACAAGGCCATCGACATGGCCGTGGTTGGCATGAACCCGG
AGTATGATCGAAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA
CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA
GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG
CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC
AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA
CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG
ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG
GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG
TTGTACGATAGCCTAA
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Synonyms
Publications