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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:217004..219119 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00600.1 vs.
Match: EWM26545.1 (g protein-coupled receptor kinase 1 [Nannochloropsis gaditana]) HSP 1 Score: 556.6 bits (1433), Expect = 6.600e-155 Identity = 255/306 (83.33%), Postives = 281/306 (91.83%), Query Frame = 0
Query: 81 MKVMNKRRVKAHQSETLCWNERRVLSLVDSPFVVCLRYAFTSREDLFLILDLMRGGDLAFHLDKRGRFSMDEARYFASRTVLGLMHLHQNGIVYRDLKPDNILMDESGKTRLSDLGLACRVTPNLVGAYGTRGYWAPEMLTKDARGHRVRYTQAVDWFSFGCVLYEMIIGYSPFRSERIYDWAGLTKKDKHKAIDMAVVGMNPEYDRRYFDDDSIDLCRRLLEKNPHKRLGAGGGEEVMAHPWFYPGGVGGWDAFLADVAPPPFLPNQDINAASQSAIGSFSDEAQYRKIKIEEADQEVYEGWDWV 387
MKVMNKRRVKAHQSE LCWNERR+LSLV SPFVVCL+YAFTS+EDLFLILDLMRGGDLAFHLDKRGRF+MDEARYFASRT+LGL HLHQNGIVYRDLKPDNILMDE GKTRLSDLGLAC+ +P LVGAYGTRGYWAPEML KDARGHR+RY+Q VDWFSFGCV+YEMI+GYSPFR++ IY W+GL KK+KHKAID+AVVGM+PE+DRRYFD+DSIDLCRRLLEK+P KRLGA GGE+VMAHPWF GG WD +AD PPPFLPNQDINAASQS IGSFSDE+QYRK+K+E+AD EVY GWDWV
Sbjct: 1 MKVMNKRRVKAHQSEKLCWNERRILSLVHSPFVVCLKYAFTSKEDLFLILDLMRGGDLAFHLDKRGRFTMDEARYFASRTLLGLKHLHQNGIVYRDLKPDNILMDEQGKTRLSDLGLACKASPGLVGAYGTRGYWAPEMLLKDARGHRIRYSQTVDWFSFGCVVYEMIVGYSPFRADCIYAWSGLGKKEKHKAIDLAVVGMDPEFDRRYFDEDSIDLCRRLLEKDPRKRLGARGGEDVMAHPWFRRGGASHWDTHMADSMPPPFLPNQDINAASQSVIGSFSDESQYRKMKMEDADHEVYAGWDWV 306
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=1266bp ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT ACCACAAATACATCCAGTTCGTCTACATATCCAAAAAACCTGTCAACGAA GACGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGT GCATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCA TGAACAAGCGCCGTGTCAAAGCCCACCAGTCAGAAACTCTCTGCTGGAAT GAACGGAGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAG GTACGCCTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGC GAGGAGGAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATG GATGAGGCCAGGTACTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCT GCACCAAAACGGGATTGTCTATAGGGACCTGAAACCCGACAACATCCTTA TGGACGAGTCGGGTAAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGC GTTACGCCTAATCTGGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCC GGAGATGCTGACGAAGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGG CGGTGGATTGGTTCAGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGC TACTCCCCCTTCCGTTCCGAGCGGATCTACGACTGGGCCGGCCTGACGAA AAAAGACAAACACAAGGCCATCGACATGGCCGTGGTTGGCATGAACCCGG AGTATGATCGAAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG TTGTACGATAGCCTAA back to topprotein sequence of NO08G00600.1 >NO08G00600.1-protein ID=NO08G00600.1-protein|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp MHLLSASLFDKVELLVWTFLSTHHGPAFFASPLYHKYIQFVYISKKPVNE DDFVLFRTLGRGGFGQVHGCKRCQTGKLYAMKVMNKRRVKAHQSETLCWN ERRVLSLVDSPFVVCLRYAFTSREDLFLILDLMRGGDLAFHLDKRGRFSM DEARYFASRTVLGLMHLHQNGIVYRDLKPDNILMDESGKTRLSDLGLACR VTPNLVGAYGTRGYWAPEMLTKDARGHRVRYTQAVDWFSFGCVLYEMIIG YSPFRSERIYDWAGLTKKDKHKAIDMAVVGMNPEYDRRYFDDDSIDLCRR LLEKNPHKRLGAGGGEEVMAHPWFYPGGVGGWDAFLADVAPPPFLPNQDI NAASQSAIGSFSDEAQYRKIKIEEADQEVYEGWDWVNLPSFFAEVVLFLK AEEVQGPITPRRSSEGCCTIA* back to topmRNA from alignment at chr8:217004..219119- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=mRNA|length=2116bp|location=Sequence derived from alignment at chr8:217004..219119- (Nannochloropsis oceanica) ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG
GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT
ACCACAAATACATCCAGTTCGTCTACATATCCAAAGTACGCCCTCTCTCC
CTCCCGCCCGCCCTCCCCCTTTCTTCCCTCGTTCTTCCTCTCCTTCATGT
TGTCCTAAGGATATTTGTCCCTCCATCCCCCCGTCTCTCTATCCCTCCCT
CCCTTCCTCCCACCTTTTCACCTTCGGACCCAGAAACCTGTCAACGAAGA
CGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGTGC
ATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCATG
AACAAGCGCCGTGTCAAAGCCCACCAGTCAGGTGTGTGAGAGATCTCTTC
TCCCTCCCTCCCTCCCCTCCTCCGTCCCCCCCTCCCTCCTTCACTCCCTC
CCATCATTCCTTGACGCCAAGTCTACTCCCTCTCCTTTCTTTCCCTACCT
CCCCCCCTTTCACCCGCCTACCACCAGAAACTCTCTGCTGGAATGAACGG
AGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAGGTACGC
CTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGCGAGGAG
GAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATGGATGAG
GCCAGGTAGTGAGGGAGGGAGGGGGGAGGGAGGGGGGGAGGAAGGGAGGG
GTGCAGCTGTTCCTTTGTTTCGTGTCAACATAAATAATGTGACTCTTCAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACATAACCCCCCCACACACGCACACCTACAACCATACACACGCACAGGTA
CTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCTGCACCAAAACGGGA
TTGTCTATAGGGACCTGAAACCCGACAACATCCTTATGGACGAGTCGGGT
AAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGCGTTACGCCTAATCT
GGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCCGGAGATGCTGACGA
AGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGGCGGTGGATTGGTTC
AGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGTGCGTTGGCCTCGCC
CCCTCCATTTAGCCCTCCCTCTTCTCCTTCCTTTGTTCCTCCCTTCGTTT
CTTTGAATTTTTGTGACTTCACGTCTCGCCCTCCCTCCCTCCTTCCCATT
CGCCCTCCCTTCCCCTCGCAGGCTACTCCCCCTTCCGTTCCGAGCGGATC
TACGACTGGGCCGGCCTGACGAAAAAAGACAAACACAAGGCCATCGACAT
GGCCGTGGTTGGCATGAACCCGGAGTATGATCGAAGGTGAGAAAGGGAAG
GAAGGGAGGAGGGAGGGAAGGAGGGAGGGATGACTTACGCAGAGTCGGTC
GACCCTCTCGTTACCTTACCAAGCTCGGCACCCCTCCCTCCCTTCCTCCT
TCTCCTATTCCAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA
CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA
GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG
CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC
AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA
CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG
ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG
GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG
TTGTACGATAGCCTAA back to topCoding sequence (CDS) from alignment at chr8:217004..219119- >NO08G00600.1 ID=NO08G00600.1|Name=NO08G00600.1|organism=Nannochloropsis oceanica|type=CDS|length=1266bp|location=Sequence derived from alignment at chr8:217004..219119- (Nannochloropsis oceanica) ATGCATCTCCTCTCCGCCTCTCTCTTCGACAAGGTGGAGCTGTTGGTGTG GACGTTCCTATCCACGCACCACGGGCCGGCCTTCTTCGCCTCCCCTCTCT ACCACAAATACATCCAGTTCGTCTACATATCCAAAAAACCTGTCAACGAA GACGATTTCGTCCTCTTCCGCACCCTTGGCCGGGGGGGCTTCGGACAAGT GCATGGGTGCAAGCGTTGTCAGACGGGCAAGTTATATGCGATGAAGGTCA TGAACAAGCGCCGTGTCAAAGCCCACCAGTCAGAAACTCTCTGCTGGAAT GAACGGAGGGTGCTTTCGCTCGTCGACTCGCCCTTTGTGGTTTGCCTTAG GTACGCCTTCACCAGCCGGGAAGACCTCTTCCTCATTCTCGACTTAATGC GAGGAGGAGACCTGGCATTCCACTTGGACAAACGCGGGCGCTTCTCCATG GATGAGGCCAGGTACTTCGCTTCTCGGACCGTCCTGGGGCTGATGCACCT GCACCAAAACGGGATTGTCTATAGGGACCTGAAACCCGACAACATCCTTA TGGACGAGTCGGGTAAGACCCGTCTATCCGATTTAGGCCTCGCCTGTCGC GTTACGCCTAATCTGGTCGGGGCATATGGTACCCGGGGGTATTGGGCGCC GGAGATGCTGACGAAGGATGCGAGGGGCCACCGTGTCCGTTATACGCAGG CGGTGGATTGGTTCAGCTTTGGCTGTGTTTTGTACGAGATGATTATAGGC TACTCCCCCTTCCGTTCCGAGCGGATCTACGACTGGGCCGGCCTGACGAA AAAAGACAAACACAAGGCCATCGACATGGCCGTGGTTGGCATGAACCCGG AGTATGATCGAAGGTACTTCGACGACGACAGCATCGACCTGTGCCGACGA CTGCTTGAAAAAAACCCTCACAAGCGTCTAGGAGCCGGCGGGGGGGAGGA GGTGATGGCCCATCCCTGGTTCTACCCGGGGGGGGTCGGTGGGTGGGATG CCTTCTTGGCCGATGTCGCCCCCCCGCCCTTCCTGCCCAACCAGGATATC AATGCGGCGAGTCAGTCGGCCATTGGTTCGTTCAGTGACGAAGCCCAATA CAGGAAGATTAAGATTGAGGAGGCAGATCAGGAGGTGTATGAGGGGTGGG ACTGGGTCAACCTCCCAAGCTTCTTTGCCGAGGTGGTGTTGTTCCTCAAG GCGGAGGAAGTGCAAGGACCCATCACGCCGCGGCGATCGTCGGAGGGGTG TTGTACGATAGCCTAA back to top
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