NO08G00580.1, NO08G00580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00580.1
Unique NameNO08G00580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr8:210852..213423 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:210852..213423 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00580.1 vs.
Match: EWM26547.1 (proteasome subunit alpha type 2 [Nannochloropsis gaditana])

HSP 1 Score: 452.6 bits (1163), Expect = 8.100e-124
Identity = 226/236 (95.76%), Postives = 233/236 (98.73%), Query Frame = 0 
Query:   19 MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYLDEAN 255
            MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDE++VQK+ELINPSTGFVFSGLGPDYRVLVRKSRKRAQSY+LQYRE QPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGW+ATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNE NIEIGIIGADRKF ILTPA+V+DYLDEAN
Sbjct:    1 MSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQGKTSLGIRATNGVVIATEKKLPSVLIDEAHVQKIELINPSTGFVFSGLGPDYRVLVRKSRKRAQSYFLQYREHQPVGQLVRDTAGVMQEFTQSGGVRPFGLSLLVAGYDDNGPQLFQVDPSGAYFGWQATAIGKNHVNAKNFLEKRYNEEMELDDAVHTALLTLREGFEGEMNESNIEIGIIGADRKFRILTPAEVKDYLDEAN 236
The following BLAST results are available for this feature:
BLAST of NO08G00580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26547.18.100e-12495.76proteasome subunit alpha type 2 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00580NO08G00580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00580.1NO08G00580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00580.1.cds1NO08G00580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00580.1.cds2NO08G00580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00580.1.cds3NO08G00580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00580.1.cds4NO08G00580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00580.1.cds5NO08G00580.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00580.1.cds6NO08G00580.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00580.1 ID=NO08G00580.1|Name=NO08G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
AGACGATGCGTAAAAGCGTCCCCTTTGTTTGTTGTGTTGTGTTACGTTGT
GTGAGGGTTTAGGGAGTGCAATAGATACGAGAAAGAGTAAGGGTTGAGTG
AGGCGCAGGGTGCGATGAGGTCAGGACGTGACACGAGCAGTGTGTGGATA
GAGGAAGGACACGGTAGCGTCAATGTGTTGCCCAACTGTTATTGAGAAAC
TACCAGTTGTCGACGCAGAAAAAGGAAAAGTGCGTGCCTGCTTCGAGATG
CGTGCCTTCCACAACGAGCTTGGTGTTGCAGCGGACTTGTTGGTCTTGTG
TATCGCCGTGGCTCCTGTGGACCGACCATGAGCAAGTAAGTCATCAGCAG
CATCGCCCGAAGGGCACGAACAGGGGCAACGAACTTCTTCGTCGAGGTGC
TTGCTGCCTGCGAGGCTTATTCCGTCTCGTGCCCCCTCTCGCACTTTAAA
TGTACACACCAACTTATGCCGCATCCGCACCCGCCGCACCCACAGTCAAA
GCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCG
CACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAG
GCAAAACGTCCTTGGGCATCCGTGCTACGAACGGTGTGGTCATCGCCACC
GAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCTATGTGCAAAAAGT
TGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCGGGCTTGGGGCCTG
ACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGCGCGCTCAGTCCTACTAC
CTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACCGC
GGGCGTCATGCAGGAATTTACGCAGTCTGGTGGTGTGCGTCCCTTCGGCT
TGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCCCAGCTCTTCCAG
GTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCTATCGGGAA
AAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAACGAGGAGA
TGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGCGCGAAGGC
TTCGAAGGGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGGCGC
CGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACCTCG
ACGAGGCCAATTAGTAGAAGAGGAAGGGGGGGGCGGGGGAAGGAAGGAGG
GAGCGAGGGAGGGAGCGAGGGAAGAAATGATGTGGAGTCGACGGGGGGTG
ACGGAGGAAAGGGGGATGGGGCGTCGGGAAGAAGAATCGGAAAAGCAAGA
CAGACAGACAGAAAAGAAAAGAAGATCTGGTGAAATGAAAAGGAAAGGAA
ATGAACGATTTTTGGGCTA
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protein sequence of NO08G00580.1

>NO08G00580.1-protein ID=NO08G00580.1-protein|Name=NO08G00580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MYTPTYAASAPAAPTVKAMSGDSAYSFSLTTFSRTGKLLQIEYALSAAQQ
GKTSLGIRATNGVVIATEKKLPSVLIDESYVQKVELINPSTGFVFSGLGP
DYRVLVRKSRKRAQSYYLQYREQQPVGQLVRDTAGVMQEFTQSGGVRPFG
LSLLVAGYDDNGPQLFQVDPSGAYFGWKATAIGKNHVNAKNFLEKRYNEE
MELDDAVHTALLTLREGFEGEMNEHNIEIGIIGADRKFTILTPAQVRDYL
DEAN*
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mRNA from alignment at chr8:210852..213423-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00580.1 ID=NO08G00580.1|Name=NO08G00580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2572bp|location=Sequence derived from alignment at chr8:210852..213423- (Nannochloropsis oceanica)
AGACGATGCGTAAAAGCGTCCCCTTTGTTTGTTGTGTTGTGTTACGTTGT
GTGAGGGTTTAGGGAGTGCAATAGATACGAGAAAGAGTAAGGGTTGAGTG
AGGCGCAGGGTGCGATGAGGTCAGGACGTGACACGAGCAGTGTGTGGATA
GAGGAAGGACACGGTAGCGTCAATGTGTTGCCCAACTGTTATTGAGAAAC
TACCAGTTGTCGACGCAGAAAAAGGAAAAGTGCGTGCCTGCTTCGAGATG
CGTGCCTTCCACAACGAGCTTGGTGTTGCAGCGGACTTGTTGGTCTTGTG
TATCGCCGTGGCTCCTGTGGACCGACCATGAGCAAGTAAGTCATCAGCAG
CATCGCCCGAAGGGCACGAACAGGGGCAACGAACTTCTTCGTCGAGGTGC
TTGCTGCCTGCGAGGCTTATTCCGTCTCGTGCCCCCTCTCGCACTTTAAA
TGTACACACCAACTTATGCCGCATCCGCACCCGCCGCACCCACAGTCAAA
GCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCCG
CACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAAG
GCAAAACGTCCTTGGGCATCCGTGGTACGTTTTACGATATGGACATTGAA
TATTTGGACTCAGAAAGACAGTGAAGTAGGGTCTGTATGTACTGTGTGGC
GGGTGGGCGCGATTCAATCAGGAAGAGCATACGCATAGGGTAGACAGTCA
TCGTCATACTCCATATGCTTGCTTCCCTGGCACCCTACTTTCCCTTGACG
CTCATGAAATCAAATTTATTGCATGCCTACATGACTGAGGCTAAGACTGT
GTTTGTATAGAAGCTGTATCTCTTTTTCTGCCGGCGCAGGCACCAGTCAA
GTCAAGGTTTTTCCTTCCCTCCCTTCCCCTCCCCATGTAGCTACGAACGG
TGTGGTCATCGCCACCGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGT
CCTATGTGCAAAAAGTTGAGCTCATAAATCCCTCCACGGGCTTTGTATTC
TCGGGCTTGGGGCCTGACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGGT
ATGGAGGGAGGGAGGGAGGGAGGGTGTCTGACTGGATGCATGTAATCATC
GAGCCGTTATTGAGATATTTTTTCATCGTACCTTCGGTTGTTGTATGTGT
TGGTGGCGCGGCTGGTCGCTGGGTGTCACCGTGGTGGTGCTATTGAAGCC
CCTAAGCTGTCTCACGCAATTAATTTTTCATTCCCTCACTCACACACTCC
CTCCTCATTCCCTCCCTCCATCCGTCCCCCCAGCGCGCTCAGTCCTACTA
CCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACCG
CGGGCGTCATGCAGGTACCCTCCCTCCCGCCGTCCCTCTCGCCCTCCCTC
CCTCCATCCGCTCCCTCCACCCGCTCATTCCTTTTCTTGTCTTCCTCATC
GCTCCCTCTCTCTCTCCTTCCCTCACCGCCGCACAGGAATTTACGCAGTC
TGGTGGTGTGCGTCCCTTCGGCTTGTCCTTGCTAGTAGCCGGCTATGATG
ACAACGGACCCCAGCTCTTCCAGGTACGGAGGGAGGGAGAGGGAGGGAGG
GACCGTGAAGAAGAATCAGGTGGCATTTGCGAGATTTAGTGAGCGTCTTT
GACAGCATACCAATCAGAGTCGTTCAGACCCCTCTTTCCCTCCCTGCCTT
TCTCCCTCCCTCCCCGGTTTGTTCATGCACAGCGAGCGTCTTTGATACAA
GTGGACGGATGATTAAACCCCTCCTTCCCTCCCTCCCTCCCTCTCTCCCT
CTCTCTAGGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCT
ATCGGGAAAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAA
CGAGGAGATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGC
GCGAAGGCTTCGAAGGGTACGTTCCTCCCTGTCTGCCTTCTCCTGTGTGT
ACATGCCTTGCTGCATGTGCGTGGCTTTCCTTTTTACTTCTTCTTTCCTC
TCTCCCTCTTTTTTATTCCCTTTTCAACCTCCCTCGCGCTGCGCCGGTGG
TTGTTGAAGGCAACGATGCTGACAGTCAGTCGCAGCAATTACCAGACAAT
CGGATGCATGTCCATAACTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCACAGGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGG
CGCCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACC
TCGACGAGGCCAATTAGTAGAAGAGGAAGGGGGGGGCGGGGGAAGGAAGG
AGGGAGCGAGGGAGGGAGCGAGGGAAGAAATGATGTGGAGTCGACGGGGG
GTGACGGAGGAAAGGGGGATGGGGCGTCGGGAAGAAGAATCGGAAAAGCA
AGACAGACAGACAGAAAAGAAAAGAAGATCTGGTGAAATGAAAAGGAAAG
GAAATGAACGATTTTTGGGCTA
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Coding sequence (CDS) from alignment at chr8:210852..213423-

>NO08G00580.1 ID=NO08G00580.1|Name=NO08G00580.1|organism=Nannochloropsis oceanica|type=CDS|length=765bp|location=Sequence derived from alignment at chr8:210852..213423- (Nannochloropsis oceanica)
ATGTACACACCAACTTATGCCGCATCCGCACCCGCCGCACCCACAGTCAA
AGCCATGTCGGGGGACTCCGCCTATAGTTTTTCCCTTACTACATTCTCCC
GCACGGGCAAGCTTCTCCAAATTGAGTACGCCCTCAGCGCGGCGCAGCAA
GGCAAAACGTCCTTGGGCATCCGTGCTACGAACGGTGTGGTCATCGCCAC
CGAGAAGAAGCTTCCCTCCGTCCTCATCGATGAGTCCTATGTGCAAAAAG
TTGAGCTCATAAATCCCTCCACGGGCTTTGTATTCTCGGGCTTGGGGCCT
GACTACCGGGTGCTTGTCCGCAAAAGCCGCAAGCGCGCTCAGTCCTACTA
CCTCCAGTACCGGGAGCAACAACCTGTCGGTCAGCTCGTTCGAGATACCG
CGGGCGTCATGCAGGAATTTACGCAGTCTGGTGGTGTGCGTCCCTTCGGC
TTGTCCTTGCTAGTAGCCGGCTATGATGACAACGGACCCCAGCTCTTCCA
GGTGGACCCTTCAGGCGCCTACTTCGGGTGGAAGGCCACGGCTATCGGGA
AAAACCATGTGAACGCCAAGAACTTTCTAGAAAAACGCTACAACGAGGAG
ATGGAGCTGGACGACGCGGTCCACACGGCCCTGCTCACGTTGCGCGAAGG
CTTCGAAGGGGAAATGAACGAGCACAACATTGAGATCGGCATCATAGGCG
CCGACCGGAAGTTTACCATCCTTACGCCCGCCCAGGTCAGAGACTACCTC
GACGAGGCCAATTAG
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Synonyms
Publications