NO08G00520.1, NO08G00520.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00520.1
Unique NameNO08G00520.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1229
Alignment locationchr8:194814..196042 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:194814..196042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00520.1 vs.
Match: EWM26526.1 (endonuclease v [Nannochloropsis gaditana])

HSP 1 Score: 208.4 bits (529), Expect = 3.200e-50
Identity = 108/182 (59.34%), Postives = 132/182 (72.53%), Query Frame = 0 
Query:   22 QTHHHQHEQHAEWSAIQARLQAAIIETDTFVWEDLKLIGGLDLSFLPSENKNEESNEAVACLVILSFPQLEVLYESFLPTKLNSPYISGFLAFREAPPMVALVLELRQKHPELMPQLLIVDGNGVLHPRGCGLASHVGLKTGLATLGCAKTFLHVDGLETKGVREVM-----RGGGGGEREG 199
            +T  + H    EW A Q R + AI+E DTF    L  +GGLDLSF PS + +E   EAVAC V+LS+P LEVL+ES+LPT L  PY++GFLA+RE PPM  LV ELR+  P LMPQ+L+VDGNG+LHPRGCGLASHVGL TG+ ++GCAKTFLHV+GLET  VR+ +     RGG  G REG
Sbjct:   31 KTRPNLHAIETEWRADQERRRIAILEVDTFDRASLTRVGGLDLSFFPSSHGHERE-EAVACFVVLSYPSLEVLHESYLPTTLTIPYVAGFLAYREGPPMAQLVEELRRTQPTLMPQVLMVDGNGILHPRGCGLASHVGLLTGIPSIGCAKTFLHVEGLETLAVRKALQEQGHRGGREGGREG 211
The following BLAST results are available for this feature:
BLAST of NO08G00520.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26526.13.200e-5059.34endonuclease v [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00520NO08G00520Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00520.1NO08G00520.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00520.1.cds1NO08G00520.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00520.1 ID=NO08G00520.1|Name=NO08G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp
GGCGTTTCTGGATTGAAGCAGTTTGAACGCGAGAAGCAACAGACGACAGC
ACCATCTCCAATCATCCCACCACACCACCACCTCAAACAGCCTATAGTAC
TCTATAAGGGTCCTATGAAGACACGATGATACAGAGAACGATGGTGGCAG
GGCGACGCCGCCGCTGAAGCTCTCTACATGTCCACCATGTCTTCATCCCA
GCTGGAGCGGGATGAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGCACC
ACCACCAGCACGAGCAGCACGCTGAGTGGTCGGCCATACAAGCCCGTCTC
CAAGCTGCTATTATCGAGACTGACACCTTTGTCTGGGAAGACTTAAAGCT
GATAGGTGGTCTAGACTTGAGCTTCCTCCCTTCAGAGAACAAAAACGAGG
AGAGCAACGAGGCCGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAGCTG
GAAGTCCTCTATGAAAGCTTTTTACCCACCAAATTAAACTCCCCCTATAT
TTCCGGCTTCCTTGCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAGTCT
TAGAACTACGTCAAAAGCACCCAGAATTGATGCCACAGCTTCTAATAGTG
GACGGCAATGGAGTGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCACGT
GGGTTTGAAGACAGGTTTAGCTACCTTGGGTTGTGCAAAGACATTTCTGC
ATGTCGATGGATTGGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGAGGA
GGAGGGGGAGAGAGAGAGGGGGAAGAGGTGTTGATGGTGGATGGAGGCTT
GGGAAAATGGAGAAAGGTGGAAGAGGGCAAGTTGGAAGACACCTATGTCA
ATGGCAGTACCAGTTGCAGTAGGAGCTTAACATTAATCGGTGCCTCGGGT
CGGACTTTCGGCATGGCATTTTGTCCGCCGGGTATCACTAATCCTCTCTA
CATCTCTGTCGGTACCGGCATCTCTCTCCCCTTTGCCATGCGCGTCGTCC
AAGCCTGTTGCAAGCATCGCGTGCCAGAACCAGTACGACAGGCAGACCTC
CGCTCCCGCGCGTGGATAAGAGGGCGAACGCAGGGCTAGGAGAAAAAGAT
ATAGAAACCCAAATATCAGTGTGTATTTTAAAATGAAAATAAAAATTTCA
AATAATAATGTGCCGAAAACAGCTGTGTTCTAATTTGAGCGAATTGGAAG
CGGAAAGAAACGATGAAAGGAAACATGCT
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protein sequence of NO08G00520.1

>NO08G00520.1-protein ID=NO08G00520.1-protein|Name=NO08G00520.1|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MSTMSSSQLERDERGEVELEAQTHHHQHEQHAEWSAIQARLQAAIIETDT
FVWEDLKLIGGLDLSFLPSENKNEESNEAVACLVILSFPQLEVLYESFLP
TKLNSPYISGFLAFREAPPMVALVLELRQKHPELMPQLLIVDGNGVLHPR
GCGLASHVGLKTGLATLGCAKTFLHVDGLETKGVREVMRGGGGGEREGEE
VLMVDGGLGKWRKVEEGKLEDTYVNGSTSCSRSLTLIGASGRTFGMAFCP
PGITNPLYISVGTGISLPFAMRVVQACCKHRVPEPVRQADLRSRAWIRGR
TQG*
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mRNA from alignment at chr8:194814..196042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00520.1 ID=NO08G00520.1|Name=NO08G00520.1|organism=Nannochloropsis oceanica|type=mRNA|length=1229bp|location=Sequence derived from alignment at chr8:194814..196042- (Nannochloropsis oceanica)
GGCGTTTCTGGATTGAAGCAGTTTGAACGCGAGAAGCAACAGACGACAGC
ACCATCTCCAATCATCCCACCACACCACCACCTCAAACAGCCTATAGTAC
TCTATAAGGGTCCTATGAAGACACGATGATACAGAGAACGATGGTGGCAG
GGCGACGCCGCCGCTGAAGCTCTCTACATGTCCACCATGTCTTCATCCCA
GCTGGAGCGGGATGAGAGAGGGGAGGTCGAGCTCGAAGCGCAGACGCACC
ACCACCAGCACGAGCAGCACGCTGAGTGGTCGGCCATACAAGCCCGTCTC
CAAGCTGCTATTATCGAGACTGACACCTTTGTCTGGGAAGACTTAAAGCT
GATAGGTGGTCTAGACTTGAGCTTCCTCCCTTCAGAGAACAAAAACGAGG
AGAGCAACGAGGCCGTGGCTTGCCTGGTCATCCTATCGTTCCCGCAGCTG
GAAGTCCTCTATGAAAGCTTTTTACCCACCAAATTAAACTCCCCCTATAT
TTCCGGCTTCCTTGCCTTCCGGGAAGCCCCGCCCATGGTCGCGCTAGTCT
TAGAACTACGTCAAAAGCACCCAGAATTGATGCCACAGCTTCTAATAGTG
GACGGCAATGGAGTGCTGCATCCGCGAGGGTGTGGACTGGCGTCGCACGT
GGGTTTGAAGACAGGTTTAGCTACCTTGGGTTGTGCAAAGACATTTCTGC
ATGTCGATGGATTGGAGACAAAGGGGGTGAGGGAAGTGATGAGAGGAGGA
GGAGGGGGAGAGAGAGAGGGGGAAGAGGTGTTGATGGTGGATGGAGGCTT
GGGAAAATGGAGAAAGGTGGAAGAGGGCAAGTTGGAAGACACCTATGTCA
ATGGCAGTACCAGTTGCAGTAGGAGCTTAACATTAATCGGTGCCTCGGGT
CGGACTTTCGGCATGGCATTTTGTCCGCCGGGTATCACTAATCCTCTCTA
CATCTCTGTCGGTACCGGCATCTCTCTCCCCTTTGCCATGCGCGTCGTCC
AAGCCTGTTGCAAGCATCGCGTGCCAGAACCAGTACGACAGGCAGACCTC
CGCTCCCGCGCGTGGATAAGAGGGCGAACGCAGGGCTAGGAGAAAAAGAT
ATAGAAACCCAAATATCAGTGTGTATTTTAAAATGAAAATAAAAATTTCA
AATAATAATGTGCCGAAAACAGCTGTGTTCTAATTTGAGCGAATTGGAAG
CGGAAAGAAACGATGAAAGGAAACATGCT
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Coding sequence (CDS) from alignment at chr8:194814..196042-

>NO08G00520.1 ID=NO08G00520.1|Name=NO08G00520.1|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at chr8:194814..196042- (Nannochloropsis oceanica)
ATGTCCACCATGTCTTCATCCCAGCTGGAGCGGGATGAGAGAGGGGAGGT
CGAGCTCGAAGCGCAGACGCACCACCACCAGCACGAGCAGCACGCTGAGT
GGTCGGCCATACAAGCCCGTCTCCAAGCTGCTATTATCGAGACTGACACC
TTTGTCTGGGAAGACTTAAAGCTGATAGGTGGTCTAGACTTGAGCTTCCT
CCCTTCAGAGAACAAAAACGAGGAGAGCAACGAGGCCGTGGCTTGCCTGG
TCATCCTATCGTTCCCGCAGCTGGAAGTCCTCTATGAAAGCTTTTTACCC
ACCAAATTAAACTCCCCCTATATTTCCGGCTTCCTTGCCTTCCGGGAAGC
CCCGCCCATGGTCGCGCTAGTCTTAGAACTACGTCAAAAGCACCCAGAAT
TGATGCCACAGCTTCTAATAGTGGACGGCAATGGAGTGCTGCATCCGCGA
GGGTGTGGACTGGCGTCGCACGTGGGTTTGAAGACAGGTTTAGCTACCTT
GGGTTGTGCAAAGACATTTCTGCATGTCGATGGATTGGAGACAAAGGGGG
TGAGGGAAGTGATGAGAGGAGGAGGAGGGGGAGAGAGAGAGGGGGAAGAG
GTGTTGATGGTGGATGGAGGCTTGGGAAAATGGAGAAAGGTGGAAGAGGG
CAAGTTGGAAGACACCTATGTCAATGGCAGTACCAGTTGCAGTAGGAGCT
TAACATTAATCGGTGCCTCGGGTCGGACTTTCGGCATGGCATTTTGTCCG
CCGGGTATCACTAATCCTCTCTACATCTCTGTCGGTACCGGCATCTCTCT
CCCCTTTGCCATGCGCGTCGTCCAAGCCTGTTGCAAGCATCGCGTGCCAG
AACCAGTACGACAGGCAGACCTCCGCTCCCGCGCGTGGATAAGAGGGCGA
ACGCAGGGCTAG
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Synonyms
Publications