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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:192881..194792 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00510.1 vs.
Match: EWM26531.1 (glutathione s-transferase [Nannochloropsis gaditana]) HSP 1 Score: 431.0 bits (1107), Expect = 3.400e-117 Identity = 220/338 (65.09%), Postives = 264/338 (78.11%), Query Frame = 0
Query: 1 MPTFDNFEQMGRESHRIEESEVDNVLHRTDRVTFFGNRLCPYAHVAWWSLLEKNIAFDYVHIDLGTHKPDWYKSKINPYGTVPTLYDHGKAVFESVIIAEYLEEKFGA-KGTRLLSTDPHERAAVRLLITHFRERTLPPLYRLLKAQTPAEAKLAKELVLVEMLALELLYSKRIPNHSTSTRIKPNPSSPSSPASSPSAGPFFLGSTFSLAEICIFPFLQRLSIALQHYRGLNVLQSTHLPCLQAAYDKIQERPAWKATAQSSAFYIAVYESYANPAPSSAAGGQKSERGGWGWKVASVVSLAGATLPVVSVLSFASFLLGVGIGWSYRKGP--ARTG 336
MP D +QMG+E RIE S+VD VLHR +VTFFGNRLCPYAH+AWWSLLEKN+AFDYVH+DLG KP+WYK K+NPYGTVP+LYD KAVFESVIIAEY+EEKFGA KGTRL+ DP +RAAVRL+I HFRERTLPPLY+LLKAQTPAEA +AKEL+LVEMLALE+LY+K P H P++ +S S+PS GPF LG FSLAE+ IFPFL RLS+ALQHYRG + L+STHLP LQAAY+ +QER AWKA+ Q AFYIAVYE+YA+P +A ++ RGGW W+ AS+V A +P++ ++SFAS L+GVG+G GP ARTG
Sbjct: 1 MPGLDVLDQMGKEGQRIEPSQVDAVLHRPHQVTFFGNRLCPYAHIAWWSLLEKNVAFDYVHVDLGQQKPEWYKEKVNPYGTVPSLYDGDKAVFESVIIAEYVEEKFGAEKGTRLMPADPVDRAAVRLVIAHFRERTLPPLYKLLKAQTPAEANVAKELILVEMLALEVLYNKHHPLH---------PAAVAS--STPSPGPFLLGGRFSLAEVVIFPFLDRLSVALQHYRGFHPLRSTHLPRLQAAYEVVQERAAWKASTQPPAFYIAVYEAYASPPSPAAVREEEKRRGGWLWRAASLVGAVNAAVPLLGLVSFASLLVGVGVGRYQGWGPHSARTG 327
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp CTCGCATTGTTCGCCAATAAGGGTCGTGTGCAAGCCCAAGCGCAATCTCG GGTGCCACACACCGAGTAAAAGCCCGAAGCGTGTTCTGTTGAGAAAGTAC TAGTGCTTAAGTGCTGAGAGAATGCGGCGCGATCTGGTAATTTTATAGAT GTCTCACCTCGTCTCACGAAGCGAGAGTGGGACAGCTGAATTTCCTGACT CGTTCAAGTTTCATATCGGAAAGTATGGGTTGAGCTCATTTGCTCTTCGA GCTACCGCCACAGGCATATTCCACTTCTGATTTCAGCTCATTCTATTTAC TCCATATATTGCCCGCATGCGCAAGCATAGCCACAACAGCTTCTCGTCAG CTCACCATCAATCTCCCCGCTCCCGTTTACCGGCCCAGTAGCCCCGTCGA CCATCCACCACAACAAACATGCCTACCTTCGACAACTTCGAGCAAATGGG GAGGGAAAGCCACCGTATTGAGGAATCCGAAGTAGACAATGTCCTGCATC GCACCGACAGGGTGACATTTTTTGGCAATCGTCTCTGCCCCTATGCGCAT GTTGCGTGGTGGTCCCTGTTGGAAAAAAATATCGCGTTCGATTATGTCCA CATTGATCTCGGGACGCACAAGCCAGATTGGTACAAGTCCAAAATCAATC CATATGGCACTGTCCCCACGCTTTATGACCATGGTAAGGCAGTTTTTGAG AGCGTCATTATTGCCGAGTACCTAGAGGAGAAATTTGGAGCGAAGGGGAC GCGGTTACTTTCGACCGACCCTCACGAGCGCGCGGCGGTCCGACTGCTCA TCACGCATTTTCGAGAGCGAACACTACCACCTTTGTACCGGCTGCTCAAA GCCCAGACGCCCGCAGAAGCCAAGTTGGCAAAGGAGCTCGTCCTTGTGGA GATGCTTGCCCTCGAGCTTCTCTACAGCAAGCGGATCCCCAACCACAGCA CCAGTACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCCCCGCCTCC TCCCCCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCCTTGGCCGA GATCTGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCTGCAGCACT ACAGGGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCCTCCAAGCC GCGTATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACAGCGCAATC CTCGGCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCCCGCGCCCT CCTCTGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGGGATGGAAG GTGGCGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTGGTCAGTGT CTTGTCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATGGAGCTATA GGAAGGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTTAGAGGGAA GCAGTTGACGAAAGGGGGAAGGTGCTGTGTGTGGCGACACAGGAGAAGTG ATGGGTTGGGGTGCAGGTGATGAAACTTGCAGGGTTGGGAGCCAGTAATG CAGAGAGCGACAAATAGGATGAAAAGCATACAGAAGAAAAACGGGACTTG AAAATGTGTAGGACGGAGAGTGGAGGAAAAGTGTGCATATATTAATTACA GCACAGTAACAAAAGACTTATATAGACACGGAGG back to topprotein sequence of NO08G00510.1 >NO08G00510.1-protein ID=NO08G00510.1-protein|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp MPTFDNFEQMGRESHRIEESEVDNVLHRTDRVTFFGNRLCPYAHVAWWSL LEKNIAFDYVHIDLGTHKPDWYKSKINPYGTVPTLYDHGKAVFESVIIAE YLEEKFGAKGTRLLSTDPHERAAVRLLITHFRERTLPPLYRLLKAQTPAE AKLAKELVLVEMLALELLYSKRIPNHSTSTRIKPNPSSPSSPASSPSAGP FFLGSTFSLAEICIFPFLQRLSIALQHYRGLNVLQSTHLPCLQAAYDKIQ ERPAWKATAQSSAFYIAVYESYANPAPSSAAGGQKSERGGWGWKVASVVS LAGATLPVVSVLSFASFLLGVGIGWSYRKGPARTGKFVTIG* back to topmRNA from alignment at chr8:192881..194792+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr8:192881..194792+ (Nannochloropsis oceanica) CTCGCATTGTTCGCCAATAAGGGTCGTGTGCAAGCCCAAGCGCAATCTCG
GGTGCCACACACCGAGTAAAAGCCCGAAGCGTGTTCTGTTGAGAAAGTAC
TAGTGCTTAAGTGCTGAGAGAATGCGGCGCGATCTGGTAATTTTATAGAT
GTCTCACCTCGTCTCACGAAGCGAGAGTGGGACAGCTGAATTTCCTGACT
CGTTCAAGTTTCATATCGGAAAGTATGGGTTGAGCTCATTTGCTCTTCGA
GCTACCGCCACAGGCATATTCCACTTCTGATTTCAGCTCATTCTATTTAC
TCCATATATTGCCCGCATGCGCAAGCATAGCCACAACAGCTTCTCGTCAG
CTCACCATCAATCTCCCCGCTCCCGTTTACCGGCCCAGTAGCCCCGTCGA
CCATCCACCACAACAAACATGCCTACCTTCGACAACTTCGAGCAAATGGG
GAGGGAAAGCCACCGTATTGAGGAATCCGAAGTAGACAATGTCCTGCATC
GCACCGACAGGGTGACATTTTTTGGCAATCGTCTCTGCCCCTATGCGCAT
GTTGCGTGGTGGTCCCTGTTGGAAAAAAATATCGCGTTCGATTATGTCCA
CATTGATCTCGGGACGCACAAGCCAGATTGGTACAAGTCCAAAATCAATC
CATATGGCACTGTCCCCACGCTTTATGACCATGGTAAGGCAGTTTTTGAG
AGCGTCATTATTGCCGAGTACCTAGAGGAGAAATTTGGAGCGAAGGGGAC
GCGGTTACTTTCGACCGACCCTCACGAGCGCGCGGCGGTCCGACTGCTCA
TCACGCATTTTCGAGAGCGAACACTACCACCTTTGTACCGGCTGCTCAAA
GCCCAGACGCCCGCAGAAGCCAAGTTGGCAAAGGTAAGTCTTCAGTTTTT
CAAGACTCCTTCTATTTTTCACAGTATGTATGGTGTGGGGCCTCTTCCTG
TTGTCTTCTTCAGGTGTCCTGCCTATGGTTTATCTCATTTTGGTGGTAGT
CAGAGAACATATCTCAACCGTTATGATAGCTTTGCGCGGAAGGTAGCGCT
GTGTGCTCTCTACCCCATTCTTCCTTCCTTTCTGTCCTTTCCCCCCGCCG
CACACACACAGGAGCTCGTCCTTGTGGAGATGCTTGCCCTCGAGCTTCTC
TACAGCAAGCGGATCCCCAACCACAGCACCAGTACCAGAATCAAACCCAA
TCCCTCCTCTCCGTCCTCCCCCGCCTCCTCCCCCTCCGCCGGCCCCTTCT
TTTTGGGCTCCACCTTCTCCTTGGCCGAGATCTGCATCTTCCCCTTCCTT
CAACGCCTCTCTATCGCCCTGCAGCACTACAGGGGACTCAACGTCCTTCA
GTCCACGCACCTTCCTTGCCTCCAAGCCGCGTATGACAAAATCCAGGAGC
GGCCAGCTTGGAAGGCCACAGCGCAATCCTCGGCTTTTTATATTGCCGTC
TACGAGAGCTATGCCAACCCCGCGCCCTCCTCTGCCGCGGGGGGACAGAA
GAGTGAAAGAGGAGGATGGGGATGGAAGGTGGCGTCGGTTGTGAGCTTGG
CAGGAGCGACATTACCGGTGGTCAGTGTCTTGTCGTTTGCTTCATTTTTG
TTGGGGGTAGGGATTGGATGGAGCTATAGGAAGGGGCCGGCGCGGACGGG
AAAGTTTGTGACGATCGGTTAGAGGGAAGCAGTTGACGAAAGGGGGAAGG
TGCTGTGTGTGGCGACACAGGAGAAGTGATGGGTTGGGGTGCAGGTGATG
AAACTTGCAGGGTTGGGAGCCAGTAATGCAGAGAGCGACAAATAGGATGA
AAAGCATACAGAAGAAAAACGGGACTTGAAAATGTGTAGGACGGAGAGTG
GAGGAAAAGTGTGCATATATTAATTACAGCACAGTAACAAAAGACTTATA
TAGACACGGAGG back to topCoding sequence (CDS) from alignment at chr8:192881..194792+ >NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr8:192881..194792+ (Nannochloropsis oceanica) ATGCCTACCTTCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTAT TGAGGAATCCGAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACAT TTTTTGGCAATCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCTG TTGGAAAAAAATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGCA CAAGCCAGATTGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCCA CGCTTTATGACCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGAG TACCTAGAGGAGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCGA CCCTCACGAGCGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAGC GAACACTACCACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGAA GCCAAGTTGGCAAAGGAGCTCGTCCTTGTGGAGATGCTTGCCCTCGAGCT TCTCTACAGCAAGCGGATCCCCAACCACAGCACCAGTACCAGAATCAAAC CCAATCCCTCCTCTCCGTCCTCCCCCGCCTCCTCCCCCTCCGCCGGCCCC TTCTTTTTGGGCTCCACCTTCTCCTTGGCCGAGATCTGCATCTTCCCCTT CCTTCAACGCCTCTCTATCGCCCTGCAGCACTACAGGGGACTCAACGTCC TTCAGTCCACGCACCTTCCTTGCCTCCAAGCCGCGTATGACAAAATCCAG GAGCGGCCAGCTTGGAAGGCCACAGCGCAATCCTCGGCTTTTTATATTGC CGTCTACGAGAGCTATGCCAACCCCGCGCCCTCCTCTGCCGCGGGGGGAC AGAAGAGTGAAAGAGGAGGATGGGGATGGAAGGTGGCGTCGGTTGTGAGC TTGGCAGGAGCGACATTACCGGTGGTCAGTGTCTTGTCGTTTGCTTCATT TTTGTTGGGGGTAGGGATTGGATGGAGCTATAGGAAGGGGCCGGCGCGGA CGGGAAAGTTTGTGACGATCGGTTAG back to top
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