NO08G00510.1, NO08G00510.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00510.1
Unique NameNO08G00510.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1684
Alignment locationchr8:192881..194792 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:192881..194792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G00510.1 vs.
Match: EWM26531.1 (glutathione s-transferase [Nannochloropsis gaditana])

HSP 1 Score: 431.0 bits (1107), Expect = 3.400e-117
Identity = 220/338 (65.09%), Postives = 264/338 (78.11%), Query Frame = 0
Query:    1 MPTFDNFEQMGRESHRIEESEVDNVLHRTDRVTFFGNRLCPYAHVAWWSLLEKNIAFDYVHIDLGTHKPDWYKSKINPYGTVPTLYDHGKAVFESVIIAEYLEEKFGA-KGTRLLSTDPHERAAVRLLITHFRERTLPPLYRLLKAQTPAEAKLAKELVLVEMLALELLYSKRIPNHSTSTRIKPNPSSPSSPASSPSAGPFFLGSTFSLAEICIFPFLQRLSIALQHYRGLNVLQSTHLPCLQAAYDKIQERPAWKATAQSSAFYIAVYESYANPAPSSAAGGQKSERGGWGWKVASVVSLAGATLPVVSVLSFASFLLGVGIGWSYRKGP--ARTG 336
            MP  D  +QMG+E  RIE S+VD VLHR  +VTFFGNRLCPYAH+AWWSLLEKN+AFDYVH+DLG  KP+WYK K+NPYGTVP+LYD  KAVFESVIIAEY+EEKFGA KGTRL+  DP +RAAVRL+I HFRERTLPPLY+LLKAQTPAEA +AKEL+LVEMLALE+LY+K  P H         P++ +S  S+PS GPF LG  FSLAE+ IFPFL RLS+ALQHYRG + L+STHLP LQAAY+ +QER AWKA+ Q  AFYIAVYE+YA+P   +A   ++  RGGW W+ AS+V    A +P++ ++SFAS L+GVG+G     GP  ARTG
Sbjct:    1 MPGLDVLDQMGKEGQRIEPSQVDAVLHRPHQVTFFGNRLCPYAHIAWWSLLEKNVAFDYVHVDLGQQKPEWYKEKVNPYGTVPSLYDGDKAVFESVIIAEYVEEKFGAEKGTRLMPADPVDRAAVRLVIAHFRERTLPPLYKLLKAQTPAEANVAKELILVEMLALEVLYNKHHPLH---------PAAVAS--STPSPGPFLLGGRFSLAEVVIFPFLDRLSVALQHYRGFHPLRSTHLPRLQAAYEVVQERAAWKASTQPPAFYIAVYEAYASPPSPAAVREEEKRRGGWLWRAASLVGAVNAAVPLLGLVSFASLLVGVGVGRYQGWGPHSARTG 327          
The following BLAST results are available for this feature:
BLAST of NO08G00510.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26531.13.400e-11765.09glutathione s-transferase [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00510NO08G00510Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00510.1NO08G00510.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00510.1.cds1NO08G00510.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00510.1.cds2NO08G00510.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1684bp
CTCGCATTGTTCGCCAATAAGGGTCGTGTGCAAGCCCAAGCGCAATCTCG
GGTGCCACACACCGAGTAAAAGCCCGAAGCGTGTTCTGTTGAGAAAGTAC
TAGTGCTTAAGTGCTGAGAGAATGCGGCGCGATCTGGTAATTTTATAGAT
GTCTCACCTCGTCTCACGAAGCGAGAGTGGGACAGCTGAATTTCCTGACT
CGTTCAAGTTTCATATCGGAAAGTATGGGTTGAGCTCATTTGCTCTTCGA
GCTACCGCCACAGGCATATTCCACTTCTGATTTCAGCTCATTCTATTTAC
TCCATATATTGCCCGCATGCGCAAGCATAGCCACAACAGCTTCTCGTCAG
CTCACCATCAATCTCCCCGCTCCCGTTTACCGGCCCAGTAGCCCCGTCGA
CCATCCACCACAACAAACATGCCTACCTTCGACAACTTCGAGCAAATGGG
GAGGGAAAGCCACCGTATTGAGGAATCCGAAGTAGACAATGTCCTGCATC
GCACCGACAGGGTGACATTTTTTGGCAATCGTCTCTGCCCCTATGCGCAT
GTTGCGTGGTGGTCCCTGTTGGAAAAAAATATCGCGTTCGATTATGTCCA
CATTGATCTCGGGACGCACAAGCCAGATTGGTACAAGTCCAAAATCAATC
CATATGGCACTGTCCCCACGCTTTATGACCATGGTAAGGCAGTTTTTGAG
AGCGTCATTATTGCCGAGTACCTAGAGGAGAAATTTGGAGCGAAGGGGAC
GCGGTTACTTTCGACCGACCCTCACGAGCGCGCGGCGGTCCGACTGCTCA
TCACGCATTTTCGAGAGCGAACACTACCACCTTTGTACCGGCTGCTCAAA
GCCCAGACGCCCGCAGAAGCCAAGTTGGCAAAGGAGCTCGTCCTTGTGGA
GATGCTTGCCCTCGAGCTTCTCTACAGCAAGCGGATCCCCAACCACAGCA
CCAGTACCAGAATCAAACCCAATCCCTCCTCTCCGTCCTCCCCCGCCTCC
TCCCCCTCCGCCGGCCCCTTCTTTTTGGGCTCCACCTTCTCCTTGGCCGA
GATCTGCATCTTCCCCTTCCTTCAACGCCTCTCTATCGCCCTGCAGCACT
ACAGGGGACTCAACGTCCTTCAGTCCACGCACCTTCCTTGCCTCCAAGCC
GCGTATGACAAAATCCAGGAGCGGCCAGCTTGGAAGGCCACAGCGCAATC
CTCGGCTTTTTATATTGCCGTCTACGAGAGCTATGCCAACCCCGCGCCCT
CCTCTGCCGCGGGGGGACAGAAGAGTGAAAGAGGAGGATGGGGATGGAAG
GTGGCGTCGGTTGTGAGCTTGGCAGGAGCGACATTACCGGTGGTCAGTGT
CTTGTCGTTTGCTTCATTTTTGTTGGGGGTAGGGATTGGATGGAGCTATA
GGAAGGGGCCGGCGCGGACGGGAAAGTTTGTGACGATCGGTTAGAGGGAA
GCAGTTGACGAAAGGGGGAAGGTGCTGTGTGTGGCGACACAGGAGAAGTG
ATGGGTTGGGGTGCAGGTGATGAAACTTGCAGGGTTGGGAGCCAGTAATG
CAGAGAGCGACAAATAGGATGAAAAGCATACAGAAGAAAAACGGGACTTG
AAAATGTGTAGGACGGAGAGTGGAGGAAAAGTGTGCATATATTAATTACA
GCACAGTAACAAAAGACTTATATAGACACGGAGG
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protein sequence of NO08G00510.1

>NO08G00510.1-protein ID=NO08G00510.1-protein|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MPTFDNFEQMGRESHRIEESEVDNVLHRTDRVTFFGNRLCPYAHVAWWSL
LEKNIAFDYVHIDLGTHKPDWYKSKINPYGTVPTLYDHGKAVFESVIIAE
YLEEKFGAKGTRLLSTDPHERAAVRLLITHFRERTLPPLYRLLKAQTPAE
AKLAKELVLVEMLALELLYSKRIPNHSTSTRIKPNPSSPSSPASSPSAGP
FFLGSTFSLAEICIFPFLQRLSIALQHYRGLNVLQSTHLPCLQAAYDKIQ
ERPAWKATAQSSAFYIAVYESYANPAPSSAAGGQKSERGGWGWKVASVVS
LAGATLPVVSVLSFASFLLGVGIGWSYRKGPARTGKFVTIG*
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mRNA from alignment at chr8:192881..194792+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp|location=Sequence derived from alignment at chr8:192881..194792+ (Nannochloropsis oceanica)
CTCGCATTGTTCGCCAATAAGGGTCGTGTGCAAGCCCAAGCGCAATCTCG GGTGCCACACACCGAGTAAAAGCCCGAAGCGTGTTCTGTTGAGAAAGTAC TAGTGCTTAAGTGCTGAGAGAATGCGGCGCGATCTGGTAATTTTATAGAT GTCTCACCTCGTCTCACGAAGCGAGAGTGGGACAGCTGAATTTCCTGACT CGTTCAAGTTTCATATCGGAAAGTATGGGTTGAGCTCATTTGCTCTTCGA GCTACCGCCACAGGCATATTCCACTTCTGATTTCAGCTCATTCTATTTAC TCCATATATTGCCCGCATGCGCAAGCATAGCCACAACAGCTTCTCGTCAG CTCACCATCAATCTCCCCGCTCCCGTTTACCGGCCCAGTAGCCCCGTCGA CCATCCACCACAACAAACATGCCTACCTTCGACAACTTCGAGCAAATGGG GAGGGAAAGCCACCGTATTGAGGAATCCGAAGTAGACAATGTCCTGCATC GCACCGACAGGGTGACATTTTTTGGCAATCGTCTCTGCCCCTATGCGCAT GTTGCGTGGTGGTCCCTGTTGGAAAAAAATATCGCGTTCGATTATGTCCA CATTGATCTCGGGACGCACAAGCCAGATTGGTACAAGTCCAAAATCAATC CATATGGCACTGTCCCCACGCTTTATGACCATGGTAAGGCAGTTTTTGAG AGCGTCATTATTGCCGAGTACCTAGAGGAGAAATTTGGAGCGAAGGGGAC GCGGTTACTTTCGACCGACCCTCACGAGCGCGCGGCGGTCCGACTGCTCA TCACGCATTTTCGAGAGCGAACACTACCACCTTTGTACCGGCTGCTCAAA GCCCAGACGCCCGCAGAAGCCAAGTTGGCAAAGGTAAGTCTTCAGTTTTT CAAGACTCCTTCTATTTTTCACAGTATGTATGGTGTGGGGCCTCTTCCTG TTGTCTTCTTCAGGTGTCCTGCCTATGGTTTATCTCATTTTGGTGGTAGT CAGAGAACATATCTCAACCGTTATGATAGCTTTGCGCGGAAGGTAGCGCT GTGTGCTCTCTACCCCATTCTTCCTTCCTTTCTGTCCTTTCCCCCCGCCG CACACACACAGGAGCTCGTCCTTGTGGAGATGCTTGCCCTCGAGCTTCTC TACAGCAAGCGGATCCCCAACCACAGCACCAGTACCAGAATCAAACCCAA TCCCTCCTCTCCGTCCTCCCCCGCCTCCTCCCCCTCCGCCGGCCCCTTCT TTTTGGGCTCCACCTTCTCCTTGGCCGAGATCTGCATCTTCCCCTTCCTT CAACGCCTCTCTATCGCCCTGCAGCACTACAGGGGACTCAACGTCCTTCA GTCCACGCACCTTCCTTGCCTCCAAGCCGCGTATGACAAAATCCAGGAGC GGCCAGCTTGGAAGGCCACAGCGCAATCCTCGGCTTTTTATATTGCCGTC TACGAGAGCTATGCCAACCCCGCGCCCTCCTCTGCCGCGGGGGGACAGAA GAGTGAAAGAGGAGGATGGGGATGGAAGGTGGCGTCGGTTGTGAGCTTGG CAGGAGCGACATTACCGGTGGTCAGTGTCTTGTCGTTTGCTTCATTTTTG TTGGGGGTAGGGATTGGATGGAGCTATAGGAAGGGGCCGGCGCGGACGGG AAAGTTTGTGACGATCGGTTAGAGGGAAGCAGTTGACGAAAGGGGGAAGG TGCTGTGTGTGGCGACACAGGAGAAGTGATGGGTTGGGGTGCAGGTGATG AAACTTGCAGGGTTGGGAGCCAGTAATGCAGAGAGCGACAAATAGGATGA AAAGCATACAGAAGAAAAACGGGACTTGAAAATGTGTAGGACGGAGAGTG GAGGAAAAGTGTGCATATATTAATTACAGCACAGTAACAAAAGACTTATA TAGACACGGAGG
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Coding sequence (CDS) from alignment at chr8:192881..194792+

>NO08G00510.1 ID=NO08G00510.1|Name=NO08G00510.1|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at chr8:192881..194792+ (Nannochloropsis oceanica)
ATGCCTACCTTCGACAACTTCGAGCAAATGGGGAGGGAAAGCCACCGTAT
TGAGGAATCCGAAGTAGACAATGTCCTGCATCGCACCGACAGGGTGACAT
TTTTTGGCAATCGTCTCTGCCCCTATGCGCATGTTGCGTGGTGGTCCCTG
TTGGAAAAAAATATCGCGTTCGATTATGTCCACATTGATCTCGGGACGCA
CAAGCCAGATTGGTACAAGTCCAAAATCAATCCATATGGCACTGTCCCCA
CGCTTTATGACCATGGTAAGGCAGTTTTTGAGAGCGTCATTATTGCCGAG
TACCTAGAGGAGAAATTTGGAGCGAAGGGGACGCGGTTACTTTCGACCGA
CCCTCACGAGCGCGCGGCGGTCCGACTGCTCATCACGCATTTTCGAGAGC
GAACACTACCACCTTTGTACCGGCTGCTCAAAGCCCAGACGCCCGCAGAA
GCCAAGTTGGCAAAGGAGCTCGTCCTTGTGGAGATGCTTGCCCTCGAGCT
TCTCTACAGCAAGCGGATCCCCAACCACAGCACCAGTACCAGAATCAAAC
CCAATCCCTCCTCTCCGTCCTCCCCCGCCTCCTCCCCCTCCGCCGGCCCC
TTCTTTTTGGGCTCCACCTTCTCCTTGGCCGAGATCTGCATCTTCCCCTT
CCTTCAACGCCTCTCTATCGCCCTGCAGCACTACAGGGGACTCAACGTCC
TTCAGTCCACGCACCTTCCTTGCCTCCAAGCCGCGTATGACAAAATCCAG
GAGCGGCCAGCTTGGAAGGCCACAGCGCAATCCTCGGCTTTTTATATTGC
CGTCTACGAGAGCTATGCCAACCCCGCGCCCTCCTCTGCCGCGGGGGGAC
AGAAGAGTGAAAGAGGAGGATGGGGATGGAAGGTGGCGTCGGTTGTGAGC
TTGGCAGGAGCGACATTACCGGTGGTCAGTGTCTTGTCGTTTGCTTCATT
TTTGTTGGGGGTAGGGATTGGATGGAGCTATAGGAAGGGGCCGGCGCGGA
CGGGAAAGTTTGTGACGATCGGTTAG
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Synonyms
Publications