NO08G00500.1, NO08G00500.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00500.1
Unique NameNO08G00500.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1256
Alignment locationchr8:191210..192638 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:191210..192638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00500.1 vs.
Match: EWM26530.1 (thioredoxin family protein [Nannochloropsis gaditana])

HSP 1 Score: 532.7 bits (1371), Expect = 7.800e-148
Identity = 262/321 (81.62%), Postives = 284/321 (88.47%), Query Frame = 0 
Query:    3 RLILTSAALVVLAFQTTTVAFQP--RGRLQMIWGGQRTKKPVAIGGPVNEPKPFSVRPDKFLDVATASTVSLLRAGSGAFVQGYKVALVDTDQVEAGEYTFVSSGGKRSKETSATFIARPKQPIILYEFQGCPFCAKVREVVSILDLDVLFYPCPRDSKVFRPEAISRGGKSQFPYMVDPNTKVEMYESADIIQYLVDTYGTGETPSGLGAGTANVVKISLALLPRFGKGSRVISGGSKVPSKPLIYWGYEASPFCRLVKEKLNELELPHVQKSCARGSAKRKELQARAGKFLVPFIEDPNTGVSMYESAEIMEYLEKTYA 322
            R  L   A +VL  Q T +AF+P  R R+QM+WG Q TKKPV IGGP+NEPKPFSVRPDKFLDVATAS VSLLR GSGAFVQGYKV LV T++V+AG+YTFVS GGKRSKET A F+ RPKQPIILYEFQGCPFCAKVRE VSILDLDVLFYPCP+D K FRP A++RGGKSQFPYMVDPNTKVEMYES DIIQYLVD YGTGETP+GLGAG ANVVKI LAL PR GKGS+V++GGS +P KPLIYWGYEASPFCRLVKEKLNELELPHVQKSCARGS+KR+ELQARAGKFLVPFIEDPNTGVSM+ESAEIMEYL KTYA
Sbjct:    2 RHFLAITAPIVLLVQMT-MAFRPTARSRVQMLWGSQ-TKKPVTIGGPINEPKPFSVRPDKFLDVATASAVSLLRGGSGAFVQGYKVELVGTEEVDAGDYTFVSVGGKRSKETCAAFVGRPKQPIILYEFQGCPFCAKVREAVSILDLDVLFYPCPKDGKKFRPAAVARGGKSQFPYMVDPNTKVEMYESGDIIQYLVDNYGTGETPAGLGAGYANVVKIGLALAPRIGKGSKVVAGGSNIPQKPLIYWGYEASPFCRLVKEKLNELELPHVQKSCARGSSKRRELQARAGKFLVPFIEDPNTGVSMFESAEIMEYLTKTYA 320
The following BLAST results are available for this feature:
BLAST of NO08G00500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26530.17.800e-14881.62thioredoxin family protein [Nannochloropsis gadita... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00500NO08G00500Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00500.1NO08G00500.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00500.1.cds1NO08G00500.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00500.1.cds2NO08G00500.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00500.1 ID=NO08G00500.1|Name=NO08G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
ACAGACAAATGGGACGTCTCATCCTCACGAGCGCGGCATTGGTCGTTCTC
GCGTTTCAGACTACCACTGTTGCCTTCCAACCTCGTGGCCGCCTGCAAAT
GATTTGGGGAGGGCAACGAACTAAAAAGCCCGTCGCCATTGGCGGCCCCG
TCAATGAGCCCAAACCTTTCAGCGTTCGCCCGGACAAGTTCCTCGACGTC
GCCACAGCCAGCACAGTCAGCTTGTTGCGTGCGGGCTCCGGGGCATTCGT
CCAGGGGTACAAGGTCGCACTCGTCGACACGGATCAAGTCGAAGCAGGCG
AATACACCTTTGTGTCCAGTGGGGGGAAACGCAGCAAGGAGACCAGTGCC
ACTTTCATCGCCCGCCCTAAGCAACCTATCATCCTTTACGAATTCCAAGG
CTGCCCTTTCTGTGCGAAGGTCCGAGAAGTCGTCTCCATCTTGGATCTCG
ACGTGTTGTTTTACCCCTGTCCGAGGGACAGCAAGGTGTTCCGTCCGGAA
GCCATCTCTCGAGGGGGCAAGTCGCAGTTCCCTTACATGGTGGACCCCAA
CACCAAAGTGGAAATGTACGAATCCGCAGACATAATCCAATACCTCGTCG
ACACGTACGGCACGGGAGAGACCCCCTCAGGTCTCGGAGCAGGCACGGCG
AACGTAGTCAAAATCAGCCTCGCTTTGCTCCCGCGCTTCGGAAAAGGTAG
CCGGGTGATTTCGGGTGGTTCCAAGGTCCCTTCGAAGCCTCTCATTTACT
GGGGCTACGAGGCCTCTCCCTTCTGCAGGCTTGTCAAGGAAAAACTCAAT
GAATTAGAGCTTCCGCATGTCCAGAAATCGTGTGCCCGAGGCAGTGCAAA
ACGCAAGGAGCTGCAGGCTCGTGCGGGGAAATTCCTTGTCCCATTTATTG
AGGATCCTAATACTGGTGTGAGCATGTACGAGAGTGCGGAGATTATGGAG
TACCTCGAGAAGACGTATGCGGCCTAGGGGGATGGGGAGGGAGGGAGAGA
GGGAGGGAGGGAGGGAGGGAGGGAGGAGGGAGGGAGGGAGGAGGGAGGGA
GGGAAGAGGGTGGGAGGAAGGGAGGGATTGAAGAGGATCAGGATCTGCAG
TGAAAGGGAATGAGCCGAAGCCTCCAATACGGAATTGGAAGCAGGGAGGG
ATGAAGGAAGGGAGAGGAATTGAAGAGGGATTGGACGCGTGCTGTATCAT
GACGTTTGAAGGAGGGAGGGAGGGAGGAGTTGAGGGAGGGAGGGAGGAGT
TGAGGG
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protein sequence of NO08G00500.1

>NO08G00500.1-protein ID=NO08G00500.1-protein|Name=NO08G00500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=323bp
MGRLILTSAALVVLAFQTTTVAFQPRGRLQMIWGGQRTKKPVAIGGPVNE
PKPFSVRPDKFLDVATASTVSLLRAGSGAFVQGYKVALVDTDQVEAGEYT
FVSSGGKRSKETSATFIARPKQPIILYEFQGCPFCAKVREVVSILDLDVL
FYPCPRDSKVFRPEAISRGGKSQFPYMVDPNTKVEMYESADIIQYLVDTY
GTGETPSGLGAGTANVVKISLALLPRFGKGSRVISGGSKVPSKPLIYWGY
EASPFCRLVKEKLNELELPHVQKSCARGSAKRKELQARAGKFLVPFIEDP
NTGVSMYESAEIMEYLEKTYAA*
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mRNA from alignment at chr8:191210..192638-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00500.1 ID=NO08G00500.1|Name=NO08G00500.1|organism=Nannochloropsis oceanica|type=mRNA|length=1429bp|location=Sequence derived from alignment at chr8:191210..192638- (Nannochloropsis oceanica)
ACAGACAAATGGGACGTCTCATCCTCACGAGCGCGGCATTGGTCGTTCTC
GCGTTTCAGACTACCACTGTTGCCTTCCAACCTCGTGGCCGCCTGCAAAT
GATTTGGGGAGGGCAACGAACTAAAAAGCCCGTCGCCATTGGCGGCCCCG
TCAATGAGCCCAAACCTTTCAGCGTTCGCCCGGACAAGTTCCTCGACGTC
GCCACAGCCAGCACAGTCAGCTTGTTGCGTGCGGGCTCCGGGGCATTCGT
CCAGGGGTACAAGGTCGCACTCGTCGACACGGATCAAGTCGAAGCAGGCG
AATACACCTTTGTGTCCAGTGGGGGGAAACGCAGCAAGGAGACCAGTGCC
ACTTTCATCGCCCGCCCTAAGCAACCTATCATCCTTTACGAATTCCAAGG
CTGCCCTTTCTGTGCGAAGGTCCGAGAAGTCGTCTCCATCTTGGATCTCG
ACGTGTTGTTTTACCCCTGTCCGAGGGACAGCAAGGTGTTCCGTCCGGAA
GCCATCTCTCGAGGGGGCAAGTCGCAGTTCCCTTACATGGTGGACCCCAA
CACCAAAGTGGTGGGTGGAAGAAAAAGAGGAGGGGAAAGAGGGAGGAGGG
AGGGGAAAGCGATCGGAAACGACGCTCGATAGGGAGTGAAGGAGGTGTTG
TGTCCTCATGATGGTTTTAGCCTTAGTTCGTCTTTGTTCAAACGCACCTC
CTCCCTCCTTCCCTCCCTCCCTCCTCCTCCTAGGAAATGTACGAATCCGC
AGACATAATCCAATACCTCGTCGACACGTACGGCACGGGAGAGACCCCCT
CAGGTCTCGGAGCAGGCACGGCGAACGTAGTCAAAATCAGCCTCGCTTTG
CTCCCGCGCTTCGGAAAAGGTAGCCGGGTGATTTCGGGTGGTTCCAAGGT
CCCTTCGAAGCCTCTCATTTACTGGGGCTACGAGGCCTCTCCCTTCTGCA
GGCTTGTCAAGGAAAAACTCAATGAATTAGAGCTTCCGCATGTCCAGAAA
TCGTGTGCCCGAGGCAGTGCAAAACGCAAGGAGCTGCAGGCTCGTGCGGG
GAAATTCCTTGTCCCATTTATTGAGGATCCTAATACTGGTGTGAGCATGT
ACGAGAGTGCGGAGATTATGGAGTACCTCGAGAAGACGTATGCGGCCTAG
GGGGATGGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGA
GGGAGGGAGGGAGGAGGGAGGGAGGGAAGAGGGTGGGAGGAAGGGAGGGA
TTGAAGAGGATCAGGATCTGCAGTGAAAGGGAATGAGCCGAAGCCTCCAA
TACGGAATTGGAAGCAGGGAGGGATGAAGGAAGGGAGAGGAATTGAAGAG
GGATTGGACGCGTGCTGTATCATGACGTTTGAAGGAGGGAGGGAGGGAGG
AGTTGAGGGAGGGAGGGAGGAGTTGAGGG
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Coding sequence (CDS) from alignment at chr8:191210..192638-

>NO08G00500.1 ID=NO08G00500.1|Name=NO08G00500.1|organism=Nannochloropsis oceanica|type=CDS|length=969bp|location=Sequence derived from alignment at chr8:191210..192638- (Nannochloropsis oceanica)
ATGGGACGTCTCATCCTCACGAGCGCGGCATTGGTCGTTCTCGCGTTTCA
GACTACCACTGTTGCCTTCCAACCTCGTGGCCGCCTGCAAATGATTTGGG
GAGGGCAACGAACTAAAAAGCCCGTCGCCATTGGCGGCCCCGTCAATGAG
CCCAAACCTTTCAGCGTTCGCCCGGACAAGTTCCTCGACGTCGCCACAGC
CAGCACAGTCAGCTTGTTGCGTGCGGGCTCCGGGGCATTCGTCCAGGGGT
ACAAGGTCGCACTCGTCGACACGGATCAAGTCGAAGCAGGCGAATACACC
TTTGTGTCCAGTGGGGGGAAACGCAGCAAGGAGACCAGTGCCACTTTCAT
CGCCCGCCCTAAGCAACCTATCATCCTTTACGAATTCCAAGGCTGCCCTT
TCTGTGCGAAGGTCCGAGAAGTCGTCTCCATCTTGGATCTCGACGTGTTG
TTTTACCCCTGTCCGAGGGACAGCAAGGTGTTCCGTCCGGAAGCCATCTC
TCGAGGGGGCAAGTCGCAGTTCCCTTACATGGTGGACCCCAACACCAAAG
TGGAAATGTACGAATCCGCAGACATAATCCAATACCTCGTCGACACGTAC
GGCACGGGAGAGACCCCCTCAGGTCTCGGAGCAGGCACGGCGAACGTAGT
CAAAATCAGCCTCGCTTTGCTCCCGCGCTTCGGAAAAGGTAGCCGGGTGA
TTTCGGGTGGTTCCAAGGTCCCTTCGAAGCCTCTCATTTACTGGGGCTAC
GAGGCCTCTCCCTTCTGCAGGCTTGTCAAGGAAAAACTCAATGAATTAGA
GCTTCCGCATGTCCAGAAATCGTGTGCCCGAGGCAGTGCAAAACGCAAGG
AGCTGCAGGCTCGTGCGGGGAAATTCCTTGTCCCATTTATTGAGGATCCT
AATACTGGTGTGAGCATGTACGAGAGTGCGGAGATTATGGAGTACCTCGA
GAAGACGTATGCGGCCTAG
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Synonyms
Publications