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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:188963..190841 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00490.1 vs.
Match: EWM26523.1 (inhibitor of growth ing4 [Nannochloropsis gaditana]) HSP 1 Score: 102.4 bits (254), Expect = 2.800e-18 Identity = 112/260 (43.08%), Postives = 135/260 (51.92%), Query Frame = 0
Query: 96 DDDEEEDEEEEAGK-------KRGRGGG----------KKENSVGGKGGKKAAPGGSSSRGKGKGRASASSLDSEDEEEEEEEEEEEDDASRR-------------------ATLRQFQHAALRCADEKIQLAIHVYDLLDTQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNYQYMQKAEGGGGGRGIKRGRGRW-----------PDAEGGGGGGVGGSSRLTYSRGGGGGMWGVGGEEMV 309
++ EEE+EEE+ G+ + R GG K+E GG+G +K S G+ +GR + E+ EEEEEEEEEE + A+LR+ QHAALRCADEKI LAIH YDLLDTQIRH+DSD+RRFERHYGYVPP VEEAAR+A E+QQQQ Y + + G RG KR RG P + G GGG GG GGGGG G GG MV
Sbjct: 97 EEGEEEEEEEDIGRGNSRGGNRCTRNGGQNSGRKVAAWKEEERRGGRGREKRER--EVSHGRLRGRRVPEEEEEEEVEEEEEEEEEEQEEEEEVEEEEEEEEEEIDGSGTCLASLRELQHAALRCADEKIALAIHAYDLLDTQIRHLDSDIRRFERHYGYVPPMVEEAARRA---EEQQQQAPGGNGHVEEWYRGRRKRRTGARGAKRRRGSMNGEATTGGAGNPVSLVGPGGGQGGG-------GGGGGGGGEGGALMV 344
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp CTCATCTCCACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAAC GGTCATGCCCCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGA AGCACGCCCACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAA AACAGGCAAATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTT CGCTAACTGGCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCT TTAAAAATCCTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACA GGCAGGGTCACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGT ACCTCGAGGATAATCTGGAGCACGGGGCTCCTTTGCCAGATAGAGTAAAA GAGACGTTCCACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGAC CACGAGGGCCGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAG ACGACGATGAGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGA AGAGGAGGAGGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAA GGCCGCGCCAGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCAT CAGCATCATCATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAG GAGGAAGAGGACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCA CGCGGCCTTGCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTT ATGATCTGTTAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGG TTTGAGAGGCATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAG GAAGGCCGCGGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGA TGAGTAGAAATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGG AGGGGGATAAAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGG AGGAGGAGGAGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAG GGGGAGGGATGTGGGGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAG GAGGAGGAGGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGT GGGAGTGGGGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCG CAATATTGCCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGT ACGAGTGGTTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCG GGAAATCGGTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGG AGGGGGGGAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCG GTTGGAGGAGAAGAAGGGGTTGAGGGAGGG back to topprotein sequence of NO08G00490.1 >NO08G00490.1-protein ID=NO08G00490.1-protein|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp MPMACITSALPPLKILPAKSHTLPTHQSQAGSQEEDDDGGMIGPGYLEDN LEHGAPLPDRVKETFHLLRELDVATRLLTTRADRLIGATDGIPQRDDDEE EDEEEEAGKKRGRGGGKKENSVGGKGGKKAAPGGSSSRGKGKGRASASSL DSEDEEEEEEEEEEEDDASRRATLRQFQHAALRCADEKIQLAIHVYDLLD TQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNY QYMQKAEGGGGGRGIKRGRGRWPDAEGGGGGGVGGSSRLTYSRGGGGGMW GVGGEEMVYWEEEEEEEGEEGTGRGWWGVGVGEGWTRTSRSTVTVAILPM GR* back to topmRNA from alignment at chr8:188963..190841+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr8:188963..190841+ (Nannochloropsis oceanica) CTCATCTCCACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAAC
GGTCATGCCCCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGA
AGCACGCCCACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAA
AACAGGCAAATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTT
CGCTAACTGGCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCT
TTAAAAATCCTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACA
GGCAGGGTCACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGT
ACCTCGAGGATAATCTGGAGCACGGGGCTCCTTTGCCAGATAGGTACGTT
TCAGGGGATTGATTTTGTCAAGCGTGCCTGCAAAAGCGAGCTGCTCACCT
ACTCAGGTCACTCATGCCCTCGCGCATGGGGTGTTTTCTTTTGCGCGTGC
GATGTTTCGATTAATATGCATATAGATGGTTATCTGCTTCTCGTTCGTGT
CTTATCTGCAAAAGACACCGAGGATATGGGGATTTGATCCCCATTCCATG
CCTTTTCCCTTCCGTAGTCTGGTTGAGATACCAACCCTTCCCTCTCCTGA
TTGCACACATTACGTACATACACGCCCTCGCACATTGACAACGCATCACT
AGACTTCGCCGCTACCTTAGATCCTTCCGCCCCTCTACCTACTCCTCCTC
ACCCATGATACCTTCCCCCCCTCTCCCTCTCCCCAAAAATAGAGTAAAAG
AGACGTTCCACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACC
ACGAGGGCCGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGA
CGACGATGAGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAA
GAGGAGGAGGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAG
GCCGCGCCAGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATC
AGCATCATCATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGAGGACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCAC
GCGGCCTTGCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTA
TGATCTGTTAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGT
TTGAGAGGCATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGG
AAGGCCGCGGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGAT
GAGTAGAAATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGA
GGGGGATAAAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGGA
GGAGGAGGAGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGG
GGGAGGGATGTGGGGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTG
GGAGTGGGGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGC
AATATTGCCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTA
CGAGTGGTTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGG
GAAATCGGTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGA
GGGGGGGAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGG
TTGGAGGAGAAGAAGGGGTTGAGGGAGGG back to topCoding sequence (CDS) from alignment at chr8:188963..190841+ >NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr8:188963..190841+ (Nannochloropsis oceanica) ATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCTTTAAAAATCCTTCC CGCCAAATCCCACACCCTACCCACCCATCAATCACAGGCAGGGTCACAGG AGGAGGACGACGACGGTGGAATGATTGGACCAGGGTACCTCGAGGATAAT CTGGAGCACGGGGCTCCTTTGCCAGATAGAGTAAAAGAGACGTTCCACCT TCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACCACGAGGGCCGACC GTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGACGACGATGAGGAA GAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGAGGGAA GAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCCAGGCG GCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATCAGCATCATCATTA GACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGA TGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCACGCGGCCTTGCGGT GCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTATGATCTGTTAGAC ACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGTTTGAGAGGCATTA CGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGCGGAGC AGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGATGAGTAGAAATTAC CAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATAAAGAG GGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGGAGGAGGAGGAGTAG GAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGGGGGAGGGATGTGG GGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAGGAGGAGGAGGAGGA GGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGGGGGAGG GGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGCAATATTGCCTATG GGGAGATGA back to top
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