NO08G00490.1, NO08G00490.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00490.1
Unique NameNO08G00490.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1480
Alignment locationchr8:188963..190841 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:188963..190841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00490.1 vs.
Match: EWM26523.1 (inhibitor of growth ing4 [Nannochloropsis gaditana])

HSP 1 Score: 102.4 bits (254), Expect = 2.800e-18
Identity = 112/260 (43.08%), Postives = 135/260 (51.92%), Query Frame = 0 
Query:   96 DDDEEEDEEEEAGK-------KRGRGGG----------KKENSVGGKGGKKAAPGGSSSRGKGKGRASASSLDSEDEEEEEEEEEEEDDASRR-------------------ATLRQFQHAALRCADEKIQLAIHVYDLLDTQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNYQYMQKAEGGGGGRGIKRGRGRW-----------PDAEGGGGGGVGGSSRLTYSRGGGGGMWGVGGEEMV 309
            ++ EEE+EEE+ G+       +  R GG          K+E   GG+G +K       S G+ +GR      + E+ EEEEEEEEEE +                       A+LR+ QHAALRCADEKI LAIH YDLLDTQIRH+DSD+RRFERHYGYVPP VEEAAR+A   E+QQQQ           Y  + +   G RG KR RG             P +  G GGG GG        GGGGG  G GG  MV
Sbjct:   97 EEGEEEEEEEDIGRGNSRGGNRCTRNGGQNSGRKVAAWKEEERRGGRGREKRER--EVSHGRLRGRRVPEEEEEEEVEEEEEEEEEEQEEEEEVEEEEEEEEEEIDGSGTCLASLRELQHAALRCADEKIALAIHAYDLLDTQIRHLDSDIRRFERHYGYVPPMVEEAARRA---EEQQQQAPGGNGHVEEWYRGRRKRRTGARGAKRRRGSMNGEATTGGAGNPVSLVGPGGGQGGG-------GGGGGGGGEGGALMV 344
The following BLAST results are available for this feature:
BLAST of NO08G00490.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26523.12.800e-1843.08inhibitor of growth ing4 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00490NO08G00490Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00490.1NO08G00490.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00490.1.cds1NO08G00490.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00490.1.cds2NO08G00490.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1480bp
CTCATCTCCACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAAC
GGTCATGCCCCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGA
AGCACGCCCACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAA
AACAGGCAAATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTT
CGCTAACTGGCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCT
TTAAAAATCCTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACA
GGCAGGGTCACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGT
ACCTCGAGGATAATCTGGAGCACGGGGCTCCTTTGCCAGATAGAGTAAAA
GAGACGTTCCACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGAC
CACGAGGGCCGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAG
ACGACGATGAGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGA
AGAGGAGGAGGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAA
GGCCGCGCCAGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCAT
CAGCATCATCATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAAGAGGACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCA
CGCGGCCTTGCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTT
ATGATCTGTTAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGG
TTTGAGAGGCATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAG
GAAGGCCGCGGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGA
TGAGTAGAAATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGG
AGGGGGATAAAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGG
AGGAGGAGGAGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAG
GGGGAGGGATGTGGGGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAG
GAGGAGGAGGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGT
GGGAGTGGGGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCG
CAATATTGCCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGT
ACGAGTGGTTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCG
GGAAATCGGTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGG
AGGGGGGGAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCG
GTTGGAGGAGAAGAAGGGGTTGAGGGAGGG
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protein sequence of NO08G00490.1

>NO08G00490.1-protein ID=NO08G00490.1-protein|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MPMACITSALPPLKILPAKSHTLPTHQSQAGSQEEDDDGGMIGPGYLEDN
LEHGAPLPDRVKETFHLLRELDVATRLLTTRADRLIGATDGIPQRDDDEE
EDEEEEAGKKRGRGGGKKENSVGGKGGKKAAPGGSSSRGKGKGRASASSL
DSEDEEEEEEEEEEEDDASRRATLRQFQHAALRCADEKIQLAIHVYDLLD
TQIRHIDSDLRRFERHYGYVPPAVEEAARKAAEQEKQQQQQQRQLMSRNY
QYMQKAEGGGGGRGIKRGRGRWPDAEGGGGGGVGGSSRLTYSRGGGGGMW
GVGGEEMVYWEEEEEEEGEEGTGRGWWGVGVGEGWTRTSRSTVTVAILPM
GR*
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mRNA from alignment at chr8:188963..190841+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=mRNA|length=1879bp|location=Sequence derived from alignment at chr8:188963..190841+ (Nannochloropsis oceanica)
CTCATCTCCACGCAATTGTGATAAAACGTGAGGCTTTTGCGCGCCTCAAC
GGTCATGCCCCACTCACTCTCTTTTGCCCCAGCCTATCCCACCCATCAGA
AGCACGCCCACCGCACAGACAGAGTCAGTGCCTCCTCACGTCCACGAGAA
AACAGGCAAATCCCCACGCAGATCTGGCCTGACTCATTTGAGTGCCGTTT
CGCTAACTGGCCTCATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCT
TTAAAAATCCTTCCCGCCAAATCCCACACCCTACCCACCCATCAATCACA
GGCAGGGTCACAGGAGGAGGACGACGACGGTGGAATGATTGGACCAGGGT
ACCTCGAGGATAATCTGGAGCACGGGGCTCCTTTGCCAGATAGGTACGTT
TCAGGGGATTGATTTTGTCAAGCGTGCCTGCAAAAGCGAGCTGCTCACCT
ACTCAGGTCACTCATGCCCTCGCGCATGGGGTGTTTTCTTTTGCGCGTGC
GATGTTTCGATTAATATGCATATAGATGGTTATCTGCTTCTCGTTCGTGT
CTTATCTGCAAAAGACACCGAGGATATGGGGATTTGATCCCCATTCCATG
CCTTTTCCCTTCCGTAGTCTGGTTGAGATACCAACCCTTCCCTCTCCTGA
TTGCACACATTACGTACATACACGCCCTCGCACATTGACAACGCATCACT
AGACTTCGCCGCTACCTTAGATCCTTCCGCCCCTCTACCTACTCCTCCTC
ACCCATGATACCTTCCCCCCCTCTCCCTCTCCCCAAAAATAGAGTAAAAG
AGACGTTCCACCTTCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACC
ACGAGGGCCGACCGTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGA
CGACGATGAGGAAGAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAA
GAGGAGGAGGGAAGAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAG
GCCGCGCCAGGCGGCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATC
AGCATCATCATTAGACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGAGGACGATGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCAC
GCGGCCTTGCGGTGCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTA
TGATCTGTTAGACACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGT
TTGAGAGGCATTACGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGG
AAGGCCGCGGAGCAGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGAT
GAGTAGAAATTACCAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGA
GGGGGATAAAGAGGGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGGA
GGAGGAGGAGTAGGAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGG
GGGAGGGATGTGGGGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAGG
AGGAGGAGGAGGAGGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTG
GGAGTGGGGGAGGGGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGC
AATATTGCCTATGGGGAGATGATAGGGTGTGACAACCCGAGCTGTCAGTA
CGAGTGGTTTCACTACAAGTGCGTGGGCTTAACGAGGCAGCCGACGGCGG
GAAATCGGTGGCTGTGTCCGAAGTGCAAGAGGGAGCAGGGAGGAAGAGGA
GGGGGGGAGGGGTAGGGTATTCGACGAGTGCGGCCGCGGTCCTTGATCGG
TTGGAGGAGAAGAAGGGGTTGAGGGAGGG
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Coding sequence (CDS) from alignment at chr8:188963..190841+

>NO08G00490.1 ID=NO08G00490.1|Name=NO08G00490.1|organism=Nannochloropsis oceanica|type=CDS|length=1059bp|location=Sequence derived from alignment at chr8:188963..190841+ (Nannochloropsis oceanica)
ATGCCCATGGCGTGCATCACCAGCGCACTGCCCCCTTTAAAAATCCTTCC
CGCCAAATCCCACACCCTACCCACCCATCAATCACAGGCAGGGTCACAGG
AGGAGGACGACGACGGTGGAATGATTGGACCAGGGTACCTCGAGGATAAT
CTGGAGCACGGGGCTCCTTTGCCAGATAGAGTAAAAGAGACGTTCCACCT
TCTCCGTGAGCTGGACGTGGCCACCCGTCTGCTGACCACGAGGGCCGACC
GTTTGATAGGGGCTACGGATGGAATACCGCAGCGAGACGACGATGAGGAA
GAGGATGAGGAAGAGGAGGCAGGAAAGAAGCGGGGAAGAGGAGGAGGGAA
GAAAGAGAATAGCGTTGGAGGAAAGGGAGGGAAGAAGGCCGCGCCAGGCG
GCAGCAGCAGTAGAGGTAAAGGCAAGGGAAGAGCATCAGCATCATCATTA
GACTCTGAAGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGA
TGCGTCCCGGCGAGCGACCCTCCGGCAGTTCCAGCACGCGGCCTTGCGGT
GCGCAGACGAGAAGATCCAGCTTGCCATCCATGTTTATGATCTGTTAGAC
ACCCAAATTAGGCACATCGATTCGGACTTGAGGCGGTTTGAGAGGCATTA
CGGTTATGTCCCCCCTGCCGTGGAGGAGGCGGCAAGGAAGGCCGCGGAGC
AGGAGAAGCAGCAGCAGCAGCAGCAGCGGCAATTGATGAGTAGAAATTAC
CAATATATGCAGAAGGCGGAGGGAGGAGGGGGAGGGAGGGGGATAAAGAG
GGGAAGGGGGAGGTGGCCGGATGCGGAGGGAGGAGGAGGAGGAGGAGTAG
GAGGAAGCAGTCGGTTGACGTACAGTCGAGGGGGAGGGGGAGGGATGTGG
GGCGTGGGGGGGGAGGAAATGGTGTATTGGGAGGAGGAGGAGGAGGAGGA
GGGGGAGGAGGGAACGGGAAGGGGCTGGTGGGGAGTGGGAGTGGGGGAGG
GGTGGACCCGAACGAGCCGATCTACTGTTACTGTCGCAATATTGCCTATG
GGGAGATGA
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Synonyms
Publications