NO08G00450.1, NO08G00450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00450.1
Unique NameNO08G00450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length882
Alignment locationchr8:181026..181907 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:181026..181907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00450.1 vs.
Match: EWM26535.1 (hypothetical protein Naga_100141g9 [Nannochloropsis gaditana])

HSP 1 Score: 160.2 bits (404), Expect = 9.600e-36
Identity = 114/271 (42.07%), Postives = 145/271 (53.51%), Query Frame = 0 
Query:    1 MGARHSQHRYSHPTNTTFEQDAVIGGAGGAVLGLMSGMGYFFVNQIGLRGSITLMGFAVVSGTIVGAIVCVAGAVAIRSLAWLYRQLRKRTRHGMDIQLSVMTAATAAEGQGGGGRSGGCVRKDNGSTTTNASPTTASMPTTTTTTSLTEEALAMQQAALDEARMERARALEDLHRYDEMLAHAEQRLRLA--AGRGTA---AVGEVSAGERGQKGEVQEPQPRVIPPPDNFPSIQPVHITLRLRDTTEGGSDSNTEEDMDTEFYLVEYED 267
            MG R S H Y HPTNTT EQDA IGG GG+V G +SG+GY FVNQ+GLR SITL+GFAVV G IVGAIVC+AG +A++SLAWLY +LRKR R  + +QL+  T   AA            V     ++     PT      T     LT   L+  +  L+ ++ ER R LEDL  YD  L   EQ+L  A  + RG A    V    +    Q+G     +   +P        QPVHIT RL DT      SN +  + +E  +V  E+
Sbjct:    1 MGPRQSTHIYRHPTNTTLEQDATIGGVGGSVAGAISGIGYLFVNQVGLRSSITLLGFAVVGGAIVGAIVCIAGTLAVKSLAWLYSRLRKRARQNLAVQLAPFTTEAAASE----------VHNRRANSREETQPTCKKSGAT-----LTSRELSRLEQVLETSQAERGRLLEDLRTYDSALTQLEQQLSFARESSRGNANDQYVRSHCSDTVSQRGPSHAAE--TLPLELEHFQAQPVHITFRLSDTVSECMISN-DNGISSEACIVSNEE 253
The following BLAST results are available for this feature:
BLAST of NO08G00450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26535.19.600e-3642.07hypothetical protein Naga_100141g9 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00450NO08G00450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00450.1NO08G00450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00450.1.cds1NO08G00450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00450.1 ID=NO08G00450.1|Name=NO08G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp
ATGGGAGCCAGGCATAGCCAGCACCGGTACAGCCATCCCACCAACACCAC
CTTCGAGCAAGATGCGGTCATTGGGGGGGCAGGCGGAGCAGTCCTCGGAC
TCATGTCTGGGATGGGATATTTCTTTGTGAATCAGATTGGGCTCCGCGGG
AGTATTACTTTGATGGGTTTCGCAGTGGTGAGTGGGACGATCGTTGGGGC
CATCGTATGCGTTGCCGGTGCCGTTGCGATCAGATCCCTCGCCTGGCTGT
ACCGGCAGCTTCGCAAGCGGACACGGCACGGCATGGATATCCAACTTTCT
GTTATGACAGCTGCTACTGCCGCGGAAGGGCAGGGTGGTGGAGGACGGAG
TGGAGGATGCGTGCGCAAAGACAATGGTAGCACCACCACCAATGCAAGCC
CTACAACCGCCTCGATGCCGACAACGACGACGACGACGAGCTTGACGGAA
GAGGCGTTGGCAATGCAGCAAGCCGCATTGGACGAGGCGCGAATGGAGCG
GGCACGGGCTTTAGAAGACTTGCACCGCTACGATGAAATGTTGGCCCATG
CTGAGCAGCGCTTGCGCTTGGCTGCAGGAAGAGGGACTGCAGCTGTAGGA
GAAGTATCGGCAGGAGAACGTGGGCAAAAGGGAGAGGTGCAAGAGCCGCA
GCCACGTGTAATCCCACCGCCTGATAATTTCCCGTCGATTCAGCCCGTGC
ACATCACATTGCGGCTGCGCGACACGACGGAGGGGGGCAGTGATAGCAAC
ACGGAGGAGGATATGGACACCGAGTTTTACCTGGTAGAGTATGAGGATGA
GGAGTTAGGCGAGGGACTTCGGGCAACAATGTCAAGGGGGAATGAAGGAC
AACGGGATAGCAGGACGCCACCCATTTATTAG
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protein sequence of NO08G00450.1

>NO08G00450.1-protein ID=NO08G00450.1-protein|Name=NO08G00450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=294bp
MGARHSQHRYSHPTNTTFEQDAVIGGAGGAVLGLMSGMGYFFVNQIGLRG
SITLMGFAVVSGTIVGAIVCVAGAVAIRSLAWLYRQLRKRTRHGMDIQLS
VMTAATAAEGQGGGGRSGGCVRKDNGSTTTNASPTTASMPTTTTTTSLTE
EALAMQQAALDEARMERARALEDLHRYDEMLAHAEQRLRLAAGRGTAAVG
EVSAGERGQKGEVQEPQPRVIPPPDNFPSIQPVHITLRLRDTTEGGSDSN
TEEDMDTEFYLVEYEDEELGEGLRATMSRGNEGQRDSRTPPIY*
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mRNA from alignment at chr8:181026..181907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00450.1 ID=NO08G00450.1|Name=NO08G00450.1|organism=Nannochloropsis oceanica|type=mRNA|length=882bp|location=Sequence derived from alignment at chr8:181026..181907- (Nannochloropsis oceanica)
ATGGGAGCCAGGCATAGCCAGCACCGGTACAGCCATCCCACCAACACCAC
CTTCGAGCAAGATGCGGTCATTGGGGGGGCAGGCGGAGCAGTCCTCGGAC
TCATGTCTGGGATGGGATATTTCTTTGTGAATCAGATTGGGCTCCGCGGG
AGTATTACTTTGATGGGTTTCGCAGTGGTGAGTGGGACGATCGTTGGGGC
CATCGTATGCGTTGCCGGTGCCGTTGCGATCAGATCCCTCGCCTGGCTGT
ACCGGCAGCTTCGCAAGCGGACACGGCACGGCATGGATATCCAACTTTCT
GTTATGACAGCTGCTACTGCCGCGGAAGGGCAGGGTGGTGGAGGACGGAG
TGGAGGATGCGTGCGCAAAGACAATGGTAGCACCACCACCAATGCAAGCC
CTACAACCGCCTCGATGCCGACAACGACGACGACGACGAGCTTGACGGAA
GAGGCGTTGGCAATGCAGCAAGCCGCATTGGACGAGGCGCGAATGGAGCG
GGCACGGGCTTTAGAAGACTTGCACCGCTACGATGAAATGTTGGCCCATG
CTGAGCAGCGCTTGCGCTTGGCTGCAGGAAGAGGGACTGCAGCTGTAGGA
GAAGTATCGGCAGGAGAACGTGGGCAAAAGGGAGAGGTGCAAGAGCCGCA
GCCACGTGTAATCCCACCGCCTGATAATTTCCCGTCGATTCAGCCCGTGC
ACATCACATTGCGGCTGCGCGACACGACGGAGGGGGGCAGTGATAGCAAC
ACGGAGGAGGATATGGACACCGAGTTTTACCTGGTAGAGTATGAGGATGA
GGAGTTAGGCGAGGGACTTCGGGCAACAATGTCAAGGGGGAATGAAGGAC
AACGGGATAGCAGGACGCCACCCATTTATTAG
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Coding sequence (CDS) from alignment at chr8:181026..181907-

>NO08G00450.1 ID=NO08G00450.1|Name=NO08G00450.1|organism=Nannochloropsis oceanica|type=CDS|length=882bp|location=Sequence derived from alignment at chr8:181026..181907- (Nannochloropsis oceanica)
ATGGGAGCCAGGCATAGCCAGCACCGGTACAGCCATCCCACCAACACCAC
CTTCGAGCAAGATGCGGTCATTGGGGGGGCAGGCGGAGCAGTCCTCGGAC
TCATGTCTGGGATGGGATATTTCTTTGTGAATCAGATTGGGCTCCGCGGG
AGTATTACTTTGATGGGTTTCGCAGTGGTGAGTGGGACGATCGTTGGGGC
CATCGTATGCGTTGCCGGTGCCGTTGCGATCAGATCCCTCGCCTGGCTGT
ACCGGCAGCTTCGCAAGCGGACACGGCACGGCATGGATATCCAACTTTCT
GTTATGACAGCTGCTACTGCCGCGGAAGGGCAGGGTGGTGGAGGACGGAG
TGGAGGATGCGTGCGCAAAGACAATGGTAGCACCACCACCAATGCAAGCC
CTACAACCGCCTCGATGCCGACAACGACGACGACGACGAGCTTGACGGAA
GAGGCGTTGGCAATGCAGCAAGCCGCATTGGACGAGGCGCGAATGGAGCG
GGCACGGGCTTTAGAAGACTTGCACCGCTACGATGAAATGTTGGCCCATG
CTGAGCAGCGCTTGCGCTTGGCTGCAGGAAGAGGGACTGCAGCTGTAGGA
GAAGTATCGGCAGGAGAACGTGGGCAAAAGGGAGAGGTGCAAGAGCCGCA
GCCACGTGTAATCCCACCGCCTGATAATTTCCCGTCGATTCAGCCCGTGC
ACATCACATTGCGGCTGCGCGACACGACGGAGGGGGGCAGTGATAGCAAC
ACGGAGGAGGATATGGACACCGAGTTTTACCTGGTAGAGTATGAGGATGA
GGAGTTAGGCGAGGGACTTCGGGCAACAATGTCAAGGGGGAATGAAGGAC
AACGGGATAGCAGGACGCCACCCATTTATTAG
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Synonyms
Publications