NO08G00340.1, NO08G00340.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00340.1
Unique NameNO08G00340.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1649
Alignment locationchr8:133773..135891 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:133773..135891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00340.1 vs.
Match: EWM26524.1 (allantoicase [Nannochloropsis gaditana]; EWM26525.1 allantoicase [Nannochloropsis gaditana])

HSP 1 Score: 620.9 bits (1600), Expect = 3.200e-174
Identity = 291/405 (71.85%), Postives = 332/405 (81.98%), Query Frame = 0 
Query:   56 MADRPIILTGTAAPPDFVEETDLALGRFGAKVCFATDDWFAAAENMLNHEEPVFIAEKFTTCGKWMDGWETRRKRIAGHDWCIIKMAFPGRIMGIDVDTSHFTGNYVPRCSIQAATLNDNDEASGILQWLTVARARAPKGDKMGSKATEEELSHVERVGSEEWTTVLPFTTLGAGYKDTCHNYFNVTTKERFTHLRLNMFPDGGIARLRVYGEVARDWDMVPTSQLLDLAAAENGGKAVGCSDKHYGHPRNLINPGRGINMGDGWETARKLTRPPVLEPGEGGLIKVPGSDYAILRLGTLGKVEQLEIDTKWFKGNYPESCQVEGVRLSTLMTNREVLTAEGQGQIEWKVLLRRTKLGPDCQAWFEEGGDEGEEMEGGVGPVTHLKLTIYPDGGISRLRALGRRV 461
            MADRP+  + T A PDFVEETDLAL RFG ++CFATDDWFAAAEN+L+HEEP+FI +KFT  GKWMDGWETRRKR AGHDWCIIK+AFPGRI+G+ VDTS FTGNYVPRCSIQAA+  D++E    LQ L  AR   P GDK+GSKA+EEE++    V S+ W T+LPFT LGAGYKDTCHNYF +   ERFTHLRLNMFPDGGIARLRVYG VAR W +VP +Q++DLAA ENGGKA+GCSDKHYGHPRNLINPGRGINMGDGWETARKLTRPPVLEP EGGLIKVPGSD+A+LRLGT GKV +LEIDT WFKGNYPESCQVE V L   M+N +V  A+  G++ W++LL RTKLG D QA+F+ G + G    GG   VTHLKLTIYPDGGISR+RA G +V
Sbjct:    1 MADRPMQQSHTTALPDFVEETDLALSRFGGRICFATDDWFAAAENLLDHEEPIFIPDKFTAYGKWMDGWETRRKRTAGHDWCIIKLAFPGRILGVGVDTSFFTGNYVPRCSIQAASYIDDNEPIA-LQKLAAARTEVPGGDKIGSKASEEEMTLAASVHSDSWETILPFTPLGAGYKDTCHNYFAIEATERFTHLRLNMFPDGGIARLRVYGIVARAWHLVPATQVVDLAAVENGGKAIGCSDKHYGHPRNLINPGRGINMGDGWETARKLTRPPVLEPDEGGLIKVPGSDWAVLRLGTPGKVRELEIDTCWFKGNYPESCQVEAVELPLDMSNEDVHKAQELGEVPWRILLPRTKLGADQQAYFDVGAEGGRAEAGGA--VTHLKLTIYPDGGISRVRARGTKV 402
The following BLAST results are available for this feature:
BLAST of NO08G00340.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26524.13.200e-17471.85allantoicase [Nannochloropsis gaditana]; EWM26525.... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00340NO08G00340Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00340.1NO08G00340.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00340.1.cds1NO08G00340.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00340.1.cds2NO08G00340.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00340.1.cds3NO08G00340.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00340.1 ID=NO08G00340.1|Name=NO08G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=1649bp
ATGAGTGACAGAGGCTTTAATATATGTATGAGTGTGCACCTCGACATCTC
GAAGGAGTACAGCAAGGAGGAGGAGGAGGACGAGGAGGAGCCGGCGGTAA
CCTTAATGGTGGTGATTGCGGATAGTCACAGTAAATGCATTTCCACCGCC
CTCCTTCAAACCACCATGGCCGATCGCCCCATCATACTCACCGGCACAGC
TGCGCCGCCTGATTTTGTGGAAGAGACGGATTTGGCCTTGGGACGGTTTG
GTGCTAAGGTGTGTTTTGCGACCGACGACTGGTTCGCCGCGGCGGAAAAC
ATGCTTAATCATGAAGAGCCTGTGTTTATCGCAGAGAAATTCACGACCTG
CGGCAAGTGGATGGACGGGTGGGAGACTCGGCGGAAGCGTATTGCAGGCC
ATGATTGGTGCATTATTAAGATGGCATTCCCGGGGCGCATTATGGGGATC
GATGTGGATACGTCCCATTTTACAGGGAATTACGTCCCGCGCTGCTCCAT
CCAAGCCGCCACCCTTAATGACAATGACGAGGCTTCTGGCATTCTGCAAT
GGCTTACTGTGGCTCGGGCACGGGCGCCGAAGGGGGATAAAATGGGGAGC
AAGGCCACGGAAGAGGAGCTGTCGCATGTGGAGCGGGTTGGGTCAGAGGA
GTGGACAACAGTGCTGCCTTTCACAACCCTTGGTGCTGGCTACAAGGATA
CGTGCCATAACTACTTTAATGTAACGACAAAAGAGCGGTTTACGCACTTG
AGGCTGAACATGTTTCCAGATGGGGGCATAGCGCGGTTGAGGGTGTACGG
GGAGGTGGCAAGAGATTGGGATATGGTGCCCACGTCACAGCTCCTTGACT
TGGCAGCGGCGGAGAATGGAGGGAAGGCCGTGGGGTGCAGTGATAAACAT
TATGGCCACCCACGGAATTTGATAAACCCCGGGAGGGGTATCAACATGGG
AGATGGGTGGGAAACGGCACGAAAGCTGACAAGGCCGCCGGTGTTGGAGC
CGGGGGAGGGAGGGTTGATTAAGGTACCTGGAAGTGATTATGCGATTTTG
CGGCTCGGAACGCTGGGGAAGGTTGAGCAGTTGGAAATTGATACGAAATG
GTTCAAGGGAAATTATCCTGAAAGCTGTCAGGTGGAGGGGGTGAGGTTGT
CGACCTTGATGACAAATAGAGAGGTCTTGACGGCGGAGGGACAGGGACAG
ATTGAGTGGAAGGTGCTGCTAAGGCGGACGAAGCTTGGGCCGGACTGCCA
GGCGTGGTTCGAGGAGGGGGGCGATGAGGGGGAGGAGATGGAGGGGGGGG
TAGGGCCGGTTACTCATTTGAAGCTAACCATATACCCGGATGGAGGCATT
TCACGGTTGCGCGCATTGGGGAGGCGGGTGCCAGAAAACGGAGGTCACTA
GGCGGTGGGTGCCAGGCTGAGTCGTGGAGAAATGATGCATTGAGGAAAGT
TGATTAGGAACACGATAAGACACTTGTAAAGCACACAGGGAAGGCGATTA
GAGGTCTAGGCCGCTGTGAGAGAGAAAGAGGCAGTTGGCCTCAAAGTGCT
GTCGTGTGTGCAGATTTGCGTCCTTGAGAAGATGAGGATAAAGAGGATGA
CGTAGGAAACAGAACTTACATAATTGAAAGAAAGCCAGTGAATGTCATT
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protein sequence of NO08G00340.1

>NO08G00340.1-protein ID=NO08G00340.1-protein|Name=NO08G00340.1|organism=Nannochloropsis oceanica|type=polypeptide|length=467bp
MSDRGFNICMSVHLDISKEYSKEEEEDEEEPAVTLMVVIADSHSKCISTA
LLQTTMADRPIILTGTAAPPDFVEETDLALGRFGAKVCFATDDWFAAAEN
MLNHEEPVFIAEKFTTCGKWMDGWETRRKRIAGHDWCIIKMAFPGRIMGI
DVDTSHFTGNYVPRCSIQAATLNDNDEASGILQWLTVARARAPKGDKMGS
KATEEELSHVERVGSEEWTTVLPFTTLGAGYKDTCHNYFNVTTKERFTHL
RLNMFPDGGIARLRVYGEVARDWDMVPTSQLLDLAAAENGGKAVGCSDKH
YGHPRNLINPGRGINMGDGWETARKLTRPPVLEPGEGGLIKVPGSDYAIL
RLGTLGKVEQLEIDTKWFKGNYPESCQVEGVRLSTLMTNREVLTAEGQGQ
IEWKVLLRRTKLGPDCQAWFEEGGDEGEEMEGGVGPVTHLKLTIYPDGGI
SRLRALGRRVPENGGH*
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mRNA from alignment at chr8:133773..135891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00340.1 ID=NO08G00340.1|Name=NO08G00340.1|organism=Nannochloropsis oceanica|type=mRNA|length=2119bp|location=Sequence derived from alignment at chr8:133773..135891- (Nannochloropsis oceanica)
ATGAGTGACAGAGGCTTTAATATATGTATGAGTGTGCACCTCGACATCTC
GAAGGAGTACAGCAAGGAGGAGGAGGAGGACGAGGAGGAGCCGGCGGTAA
CCTTAATGGTGGTGATTGCGGATAGTCACAGTAAATGTATGCATTTCATT
TAAGTTCTTCAGCCATCGACCTCCCCAACCCCCAAACCGCAGGATTATTT
ATTAGAATTGGGGCATTGCGTTGTTTTCCTTCTTCAGTGTGTGATACTAC
GATGACAATGATATGGAAACATGCTTAGAAAGACCGGCGTTATCTGGCGA
CAGTCTAGCGCTATCGCGTCTCTATTCCAGTCCTTCCTTGTCTCCCATGC
AGTCAGTCACCCCCCCATGTCACATCCCGTACTCTCCCATTCCACAGGCA
TTTCCACCGCCCTCCTTCAAACCACCATGGCCGATCGCCCCATCATACTC
ACCGGCACAGCTGCGCCGCCTGATTTTGTGGAAGAGACGGATTTGGCCTT
GGGACGGTTTGGTGCTAAGGTGTGTTTTGCGACCGACGACTGGTTCGCCG
CGGCGGAAAACATGCTTAATCATGAAGAGCCTGTGTTTATCGCAGAGAAA
TTCACGACCTGCGGCAAGTGGATGGACGGGTGGGAGACTCGGCGGAAGCG
TATTGCAGGCCATGATTGGTGCATTATTAAGATGGCATTCCCGGGGCGCA
TTATGGGGATCGATGTGGATACGTCCCATTTTACAGGGAATTACGTCCCG
CGCTGCTCCATCCAAGCCGCCACCCTTAATGACAATGACGAGGCTTCTGG
CATTCTGCAATGGCTTACTGTGGCTCGGGCACGGGCGCCGAAGGGGGATA
AAATGGGGAGCAAGGCCACGGAAGAGGAGCTGTCGCATGTGGAGCGGGTT
GGGTCAGAGGAGTGGACAACAGTGCTGCCTTTCACAACCCTTGGTGCTGG
CTACAAGGATACGTGCCATAACTACTTTAATGTAACGACAAAAGAGCGGT
TTACGCACTTGAGGCTGAACATGTTTCCAGATGGGGGCATAGCGCGGTTG
AGGGTGTACGGGGAGGTGGCAAGAGATTGGGATATGGTGCCCACGTCACA
GCTCCTTGACTTGGCAGCGGCGGAGAATGGAGGGAAGGCCGTGGGGTGCA
GTGATAAACATTATGGCCACCCACGGAATTTGATAAACCCCGGGAGGGGT
ATCAACATGGGAGATGGGTGGGAAACGGCACGAAAGCTGACAAGGCCGCC
GGTGTTGGAGCCGGGGGAGGGAGGGTTGATTAAGGTACCTGGAAGTGATT
ATGCGATTTTGCGGCTCGGAACGCTGGGGAAGGTTGAGCAGTTGGAAATT
GATACGAAATGGTTCAAGGGAAATTATCCTGAAAGCTGTCAGGTGGAGGG
GGTGAGGTTGTCGACCTTGATGACAAATAGAGAGGTCTTGACGGCGGAGG
GACAGGGACAGATTGAGTGGAAGGTGCTGCTAAGGCGGACGAAGCTTGGG
CCGGACTGCCAGGCGTGGTTCGAGGAGGGGGGCGATGAGGGGGAGGAGAT
GGAGGGGGGGGTAGGGCCGGTTACTCATTTGAAGCTAACCATATACCCGG
ATGGAGGCATTTCACGGTTGCGCGCATTGGGGAGGCGGGTGCCAGAAAAC
GGAGGTAGGCGAGAGGTGGAGGTGGCGCGGTTGTGAGGCAGGGGAGGGGG
ATTGCATGACGAATGTATGTATGATATGTATATGAACGCGAGTATGGTGC
TTGACTAGAAAGGCTTATTGGTGTGCGGGTATCTGTCTTTGAATTATACG
AGAAGGCGTGACGTAGTAGACTGACATTTTGACGCTCTCCTCCAACCTAT
TTAATATGTGCAGGTCACTAGGCGGTGGGTGCCAGGCTGAGTCGTGGAGA
AATGATGCATTGAGGAAAGTTGATTAGGAACACGATAAGACACTTGTAAA
GCACACAGGGAAGGCGATTAGAGGTCTAGGCCGCTGTGAGAGAGAAAGAG
GCAGTTGGCCTCAAAGTGCTGTCGTGTGTGCAGATTTGCGTCCTTGAGAA
GATGAGGATAAAGAGGATGACGTAGGAAACAGAACTTACATAATTGAAAG
AAAGCCAGTGAATGTCATT
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Coding sequence (CDS) from alignment at chr8:133773..135891-

>NO08G00340.1 ID=NO08G00340.1|Name=NO08G00340.1|organism=Nannochloropsis oceanica|type=CDS|length=1401bp|location=Sequence derived from alignment at chr8:133773..135891- (Nannochloropsis oceanica)
ATGAGTGACAGAGGCTTTAATATATGTATGAGTGTGCACCTCGACATCTC
GAAGGAGTACAGCAAGGAGGAGGAGGAGGACGAGGAGGAGCCGGCGGTAA
CCTTAATGGTGGTGATTGCGGATAGTCACAGTAAATGCATTTCCACCGCC
CTCCTTCAAACCACCATGGCCGATCGCCCCATCATACTCACCGGCACAGC
TGCGCCGCCTGATTTTGTGGAAGAGACGGATTTGGCCTTGGGACGGTTTG
GTGCTAAGGTGTGTTTTGCGACCGACGACTGGTTCGCCGCGGCGGAAAAC
ATGCTTAATCATGAAGAGCCTGTGTTTATCGCAGAGAAATTCACGACCTG
CGGCAAGTGGATGGACGGGTGGGAGACTCGGCGGAAGCGTATTGCAGGCC
ATGATTGGTGCATTATTAAGATGGCATTCCCGGGGCGCATTATGGGGATC
GATGTGGATACGTCCCATTTTACAGGGAATTACGTCCCGCGCTGCTCCAT
CCAAGCCGCCACCCTTAATGACAATGACGAGGCTTCTGGCATTCTGCAAT
GGCTTACTGTGGCTCGGGCACGGGCGCCGAAGGGGGATAAAATGGGGAGC
AAGGCCACGGAAGAGGAGCTGTCGCATGTGGAGCGGGTTGGGTCAGAGGA
GTGGACAACAGTGCTGCCTTTCACAACCCTTGGTGCTGGCTACAAGGATA
CGTGCCATAACTACTTTAATGTAACGACAAAAGAGCGGTTTACGCACTTG
AGGCTGAACATGTTTCCAGATGGGGGCATAGCGCGGTTGAGGGTGTACGG
GGAGGTGGCAAGAGATTGGGATATGGTGCCCACGTCACAGCTCCTTGACT
TGGCAGCGGCGGAGAATGGAGGGAAGGCCGTGGGGTGCAGTGATAAACAT
TATGGCCACCCACGGAATTTGATAAACCCCGGGAGGGGTATCAACATGGG
AGATGGGTGGGAAACGGCACGAAAGCTGACAAGGCCGCCGGTGTTGGAGC
CGGGGGAGGGAGGGTTGATTAAGGTACCTGGAAGTGATTATGCGATTTTG
CGGCTCGGAACGCTGGGGAAGGTTGAGCAGTTGGAAATTGATACGAAATG
GTTCAAGGGAAATTATCCTGAAAGCTGTCAGGTGGAGGGGGTGAGGTTGT
CGACCTTGATGACAAATAGAGAGGTCTTGACGGCGGAGGGACAGGGACAG
ATTGAGTGGAAGGTGCTGCTAAGGCGGACGAAGCTTGGGCCGGACTGCCA
GGCGTGGTTCGAGGAGGGGGGCGATGAGGGGGAGGAGATGGAGGGGGGGG
TAGGGCCGGTTACTCATTTGAAGCTAACCATATACCCGGATGGAGGCATT
TCACGGTTGCGCGCATTGGGGAGGCGGGTGCCAGAAAACGGAGGTCACTA
G
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Synonyms
Publications