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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:107930..110717 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00270.1 vs.
Match: EWM26493.1 (protoporphyrinogen oxidase [Nannochloropsis gaditana]) HSP 1 Score: 950.3 bits (2455), Expect = 3.300e-273 Identity = 519/684 (75.88%), Postives = 577/684 (84.36%), Query Frame = 0
Query: 1 MPAIRRSLVLGLSAALLSLLF-STDAFHMPSPALRRSTRPTTTVSTASSQRTNSLPSLYASAPSPTSSSPSASFGQVLGEILQDLFAGPEKVEETDVLVVGSGISGSTTAFYLNKAGVKCLLTEAKPVVGGNVISKTDGQFLWEEGPNSFQPTYPLMQATVDMGLANDLVLADATLPRFVYWKEKLYALPGGLSDIPFFNLLSIPGRIRAGLGALGFIRGPPKDKEESVKEFVTRHLGAETFERIIDPFVSGVYAGDPSKLSMKAALKKVKRLEELGGRGILDGALLRIQEIKRTKPPVVPEHPVYKGGQLGSFKNGLQSMPLAVAKIMGKDKVRVSYKLLNVVKGKA--GGYEALFQTPQGRRRVKCKSIAITAPAHVVNTLLRPLIPEVARLADVYYPPVASVTLAYPKTAFREPLRGFGNLIPRSMKIRTLGTIWSSSLFPGRAPKDYNMLLSYIGGAQDPDIAKLSSKEIVEEVNRDIKKVLLKPDAPPPKVLGVRLWPTAIPQYNKGHLDILAAVKEGVDKHPGLFLGGNYKTGVAFGDCVTYGMEEAEQIQKYLAS---LPTPAAAPAVASAAAPAVVA--AAAPTAAPATAPVSVAAAPAVALAAAAAPAAAPAAPAAAPLATVKAVGAV-EGREEGRPRVPAGESGMPRTVVPAEEGTEGGVVGGGRGEEAVPAAR 676
M R+SL L ++ ALLS +F S AFH+PSPA+R +T++S AS R SLPSLYAS+ TSS P+ FGQ L ++L DLFAGPEKVEETDVLVVGSGISGSTTAFYLNKAGVKCLLTEAKPVVGGNVISK++ FLWEEGPNSFQPTYPLMQATVDMGLA++LVLADA+LPRFVYWKEKLYALPGGL DIPFFNLLSIPGRIRAGLGALGFIRGPPKDKEESVKEFVTRHLGAETFERIIDPFVSGVYAGDPSKLSMKAALKKVKRLEELGGRGILDGALLRIQEI+RTKPPVVPEHPVYKGGQLGSFK GLQSMPLAVAK +GK+KVR+S+KLL+VV+GK GGYEA+FQTPQGR+R+KC+++AITAPAHVV+ LLRPL+PE ARLADVYYPPVASVTLAYPKTAFREPLRGFGNLIPRSMKIRTLGTIWSSSLFPGRAP DYNMLLSYIGGAQDP IA+LSS++IV+EV+RDIKKVLLK DAP PK+LGVRLWPTAIPQYNKGHLDILA+V+ GV KHPGLFLGGNY+TGVAFGDCVTYGMEEA +IQ YLA+ P + P+ SA AP VA ++ P++ P + S + APAVA AAA ++TV +G+ GRE G+PRVP GE+ PRTVV AEEG GG G GE P R
Sbjct: 96 MTPCRQSLGLPVAVALLSCVFLSVRAFHLPSPAIRTRLSSSTSIS-ASHGRPRSLPSLYASS---TSSPPA--FGQFLTDLLGDLFAGPEKVEETDVLVVGSGISGSTTAFYLNKAGVKCLLTEAKPVVGGNVISKSESGFLWEEGPNSFQPTYPLMQATVDMGLADELVLADASLPRFVYWKEKLYALPGGLGDIPFFNLLSIPGRIRAGLGALGFIRGPPKDKEESVKEFVTRHLGAETFERIIDPFVSGVYAGDPSKLSMKAALKKVKRLEELGGRGILDGALLRIQEIQRTKPPVVPEHPVYKGGQLGSFKRGLQSMPLAVAKALGKEKVRLSHKLLSVVEGKGPKGGYEAVFQTPQGRKRIKCQALAITAPAHVVHKLLRPLVPEAARLADVYYPPVASVTLAYPKTAFREPLRGFGNLIPRSMKIRTLGTIWSSSLFPGRAPPDYNMLLSYIGGAQDPGIAELSSQQIVKEVDRDIKKVLLKSDAPAPKILGVRLWPTAIPQYNKGHLDILASVEAGVKKHPGLFLGGNYRTGVAFGDCVTYGMEEAGRIQSYLAAKAPAPQTSVPPSPPSALAPGPVAVPSSPPSSPPPASDASDSTAPAVA--------------AAAAVSTVAGMGSTGGGREGGQPRVPEGENSRPRTVVAAEEGGRGGSCRVGEGERRRPCRR 759
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00270.1 ID=NO08G00270.1|Name=NO08G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp ATGCCAGCCATCCGTCGCTCCCTCGTTCTCGGCCTCTCGGCCGCACTCCT CTCCCTCCTCTTCTCGACCGACGCCTTCCACATGCCTTCTCCCGCCCTGA GAAGAAGCACCCGACCCACCACTACCGTCAGCACCGCCTCATCGCAACGC ACCAACTCTCTCCCTTCTCTCTACGCTTCTGCGCCCTCCCCCACCTCTTC TTCTCCCTCCGCCTCCTTTGGCCAAGTGCTTGGGGAAATTTTACAAGACC TGTTTGCAGGCCCTGAAAAAGTGGAAGAAACCGACGTGCTCGTCGTTGGC TCGGGGATCAGTGGCTCCACCACCGCCTTTTACCTCAACAAGGCCGGGGT CAAGTGCTTGTTGACGGAGGCCAAGCCCGTGGTGGGTGGCAACGTGATAA GCAAAACGGACGGGCAGTTCCTTTGGGAGGAGGGGCCGAACTCGTTCCAA CCCACTTACCCCCTCATGCAAGCCACCGTGGACATGGGCCTGGCCAACGA CCTGGTCCTTGCCGACGCAACCCTGCCACGCTTTGTTTACTGGAAGGAGA AGCTCTATGCCCTCCCGGGGGGGTTGAGCGACATTCCCTTCTTCAACCTT CTCTCCATTCCCGGCCGGATCCGTGCAGGCCTTGGCGCCTTGGGCTTTAT TCGGGGGCCTCCCAAGGATAAGGAGGAGAGCGTGAAAGAATTTGTCACGC GGCATTTGGGCGCAGAGACGTTCGAGAGGATCATCGATCCCTTCGTCTCG GGTGTGTATGCAGGAGACCCGAGCAAGCTTTCCATGAAGGCTGCCTTGAA GAAGGTCAAACGGTTGGAAGAGCTCGGCGGGCGTGGTATCCTCGACGGGG CGCTCCTTCGAATCCAGGAGATAAAGCGCACCAAGCCCCCCGTCGTACCG GAGCATCCTGTCTACAAGGGAGGGCAGCTCGGCTCCTTCAAGAATGGGCT GCAATCGATGCCTTTGGCGGTGGCCAAGATCATGGGCAAGGACAAAGTCC GGGTTTCTTACAAATTGCTGAATGTGGTGAAGGGCAAGGCGGGAGGGTAC GAGGCCTTGTTCCAGACGCCGCAAGGACGGAGGAGGGTGAAGTGCAAGTC CATCGCTATCACTGCCCCGGCACACGTTGTGAACACTCTTCTCCGGCCCC TCATCCCTGAAGTGGCACGCCTGGCCGACGTGTACTACCCTCCGGTGGCC TCGGTCACACTGGCCTACCCCAAAACCGCCTTCCGGGAGCCTCTGCGGGG TTTCGGGAATCTGATTCCGAGGAGCATGAAGATTCGGACCTTGGGCACGA TCTGGTCCTCATCCCTCTTCCCCGGCCGCGCTCCCAAGGACTACAACATG CTTCTCTCCTACATTGGTGGCGCCCAGGACCCTGATATTGCCAAGCTGAG CTCCAAGGAGATCGTGGAGGAAGTCAACCGGGACATCAAGAAGGTTCTGC TCAAGCCTGACGCCCCTCCTCCCAAGGTGCTGGGCGTCCGCCTCTGGCCC ACCGCCATTCCGCAGTATAACAAAGGCCATCTCGACATCCTGGCGGCGGT CAAGGAGGGGGTCGACAAACATCCGGGTCTCTTTTTAGGTGGCAACTACA AGACGGGCGTCGCCTTTGGCGATTGCGTTACTTATGGCATGGAGGAAGCG GAGCAGATTCAGAAGTACCTAGCGTCCCTCCCTACTCCTGCTGCTGCTCC TGCTGTTGCTTCTGCTGCCGCTCCTGCTGTTGTTGCTGCTGCCGCTCCTA CTGCTGCTCCTGCTACCGCTCCTGTTTCCGTTGCTGCTGCTCCAGCGGTT GCTCTTGCTGCTGCTGCGGCTCCTGCTGCTGCTCCCGCCGCTCCTGCTGC TGCTCCGTTAGCGACGGTGAAGGCTGTAGGAGCAGTGGAGGGAAGGGAAG AGGGACGGCCTCGGGTCCCCGCGGGTGAGAGCGGGATGCCGCGGACGGTG GTGCCGGCGGAGGAAGGGACGGAGGGAGGGGTCGTGGGTGGAGGGAGGGG AGAGGAGGCGGTGCCGGCGGCGAGGGCCGAGTGA back to topprotein sequence of NO08G00270.1 >NO08G00270.1-protein ID=NO08G00270.1-protein|Name=NO08G00270.1|organism=Nannochloropsis oceanica|type=polypeptide|length=678bp MPAIRRSLVLGLSAALLSLLFSTDAFHMPSPALRRSTRPTTTVSTASSQR TNSLPSLYASAPSPTSSSPSASFGQVLGEILQDLFAGPEKVEETDVLVVG SGISGSTTAFYLNKAGVKCLLTEAKPVVGGNVISKTDGQFLWEEGPNSFQ PTYPLMQATVDMGLANDLVLADATLPRFVYWKEKLYALPGGLSDIPFFNL LSIPGRIRAGLGALGFIRGPPKDKEESVKEFVTRHLGAETFERIIDPFVS GVYAGDPSKLSMKAALKKVKRLEELGGRGILDGALLRIQEIKRTKPPVVP EHPVYKGGQLGSFKNGLQSMPLAVAKIMGKDKVRVSYKLLNVVKGKAGGY EALFQTPQGRRRVKCKSIAITAPAHVVNTLLRPLIPEVARLADVYYPPVA SVTLAYPKTAFREPLRGFGNLIPRSMKIRTLGTIWSSSLFPGRAPKDYNM LLSYIGGAQDPDIAKLSSKEIVEEVNRDIKKVLLKPDAPPPKVLGVRLWP TAIPQYNKGHLDILAAVKEGVDKHPGLFLGGNYKTGVAFGDCVTYGMEEA EQIQKYLASLPTPAAAPAVASAAAPAVVAAAAPTAAPATAPVSVAAAPAV ALAAAAAPAAAPAAPAAAPLATVKAVGAVEGREEGRPRVPAGESGMPRTV VPAEEGTEGGVVGGGRGEEAVPAARAE* back to topmRNA from alignment at chr8:107930..110717- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00270.1 ID=NO08G00270.1|Name=NO08G00270.1|organism=Nannochloropsis oceanica|type=mRNA|length=2788bp|location=Sequence derived from alignment at chr8:107930..110717- (Nannochloropsis oceanica) ATGCCAGCCATCCGTCGCTCCCTCGTTCTCGGCCTCTCGGCCGCACTCCT
CTCCCTCCTCTTCTCGACCGACGCCTTCCACATGCCTTCTCCCGCCCTGA
GAAGAAGCACCCGACCCACCACTACCGTCAGCACCGCCTCATCGCAACGC
ACCAACTCTCTCCCTTCTCTCTACGCTTCTGCGCCCTCCCCCACCTCTTC
TTCTCCCTCCGCCTCCTTTGGCCAAGTGCTTGGGGAAATTTTACAAGACC
TGTTTGCAGGCCCTGAAAAAGTGGAAGAAACCGACGTGCTCGTCGTTGGC
TCGGGGATCAGTGGCTCCACCACCGCCTTTTACCTCAACAAGGCCGGGGT
CAAGTGCTTGTTGACGGAGGCCAAGCCCGTGGTGGGTGGCAACGTGATAA
GCAAAACGGACGGGCAGTTCCTTTGGGAGGAGGGGCCGAACTCGTTCCAA
CCCACTTACCCCCTCATGCAAGCCACCGTGGACATGGGCCTGGCCAACGA
CCTGGTCCTTGCCGACGCAACCCTGCCACGCTTTGTTTACTGGAAGGAGA
AGCTCTATGCCCTCCCGGGGGGGTTGAGCGACATTCCCTTCTTCAACCTT
CTCTCCATTCCCGGCCGGATCCGTGCAGGCCTTGGCGCCTTGGGCTTTAT
TCGGGGGCCTCCCAAGGATAAGGAGGAGAGCGTGAAAGAATTTGTCACGC
GGCATTTGGGCGCAGAGACGTTCGAGAGGATCATCGATCCCTTCGTCTCG
GGTGTGTATGCAGGAGACCCGAGCAAGCTTTCCATGAAGGCTGCCTTGAA
GAAGGTCAAACGGTTGGAAGAGCTCGGCGGGCGTGGTATCCTCGACGGGG
CGCTCCTTCGAATCCAGGAGATAAAGCGCACCAAGCCCCCCGTCGTACCG
GAGCATCCTGTCTACAAGGGAGGGCAGCTCGGCTCCTTCAAGAATGGGCT
GCAATCGATGCCTTTGGCGGTGGCCAAGATCATGGGCAAGGACAAAGTCC
GGGTTTCTTACAAATTGCTGAATGTGGTGAAGGGCAAGGCGGGAGGGTAC
GAGGCCTTGTTCCAGACGCCGCAAGGACGGAGGAGGGTGAAGTGCAAGGT
ACGGCGAAATAGGTGGGAGGGAGGGAGGGAGGGAGGAGGAGAGGGGTCGA
AGGCAGTGATTACACTTATCCATGATCTTCTCTGACGCCCTCTCCACCCC
CCTCTCCTTCCCTCCTCCTCTCCCTTTCTCCCATAGTCCATCGCTATCAC
TGCCCCGGCACACGTTGTGAACACTCTTCTCCGGCCCCTCATCCCTGAAG
TGGCACGCCTGGCCGACGTGTACTACCCTCCGGTGGCCTCGGTCACACTG
GCCTACCCCAAAACCGCCTTCCGGGAGCCTCTGCGGGGTTTCGGGAATCT
GATTCCGAGGAGCATGAAGATTCGGACCTTGGGTAAGGAGGGAGGGAGGG
AGGGAGGGTGGATGAAAGAGTAACGAAGAAGGAGAAGTAGGGAGATCCAA
TAATTCACAGCAGGTTCTTTCAATCAACGATGACCGACCGGTGATAAGTA
GATGATGGATGGATACGTAAAGCAAATCTAAGTCATCTATATATACACAT
GTAATGAGTAAAACAAGTGAAAGTCGACCGCTCTCTCACACACACCCGCA
CCCACGCGCTATCATCACAGGCACGATCTGGTCCTCATCCCTCTTCCCCG
GCCGCGCTCCCAAGGACTACAACATGCTTCTCTCCTACATTGGTGGCGCC
CAGGACCCTGATATTGCCAAGCTGAGCTCCAAGGAGATCGTGGAGGAAGT
CAACCGGGACATCAAGAAGGTTCTGCTCAAGCCTGACGCCCCTCCTCCCA
AGGTACGTTCTTTTCCTTTCCTTTCTCCCCCCTCCCCTGCCTCGTTCCCT
CCCTCCCTCGTCCAGGTTGCCGCCACGAAGTAGACCCACTTATTGGTTAA
ATAGACAGAAATAAAGATACGTAAATGAATGAATGAATGAATGAATGAAT
GAGCAATCTGTCTCTTTTCGACTTCACTGATTGGCTGGTCCAATCAGTGA
AGCGGTGAATAGATAGATCAATGAATGAACGAATGTTCATTTACAACAAA
TGCACAAATACATCAATAACCGCATGCATGAACGTAGAAACCAAATCAAT
CAACGATACGAATGAAAACGAAAATGAACTTTCTTCCCTTTTGCTTATCC
CAACCCAAAACACACACACACATACATAAGGTGCTGGGCGTCCGCCTCTG
GCCCACCGCCATTCCGCAGTATAACAAAGGCCATCTCGACATCCTGGCGG
CGGTCAAGGAGGGGGTCGACAAACATCCGGGTCTCTTTTTAGGTGGCAAC
TACAAGACGGGCGTCGCCTTTGGCGATTGCGTTACTTATGGCATGGAGGA
AGCGGAGCAGATTCAGAAGTACCTAGCGTCCCTCCCTACTCCTGCTGCTG
CTCCTGCTGTTGCTTCTGCTGCCGCTCCTGCTGTTGTTGCTGCTGCCGCT
CCTACTGCTGCTCCTGCTACCGCTCCTGTTTCCGTTGCTGCTGCTCCAGC
GGTTGCTCTTGCTGCTGCTGCGGCTCCTGCTGCTGCTCCCGCCGCTCCTG
CTGCTGCTCCGTTAGCGACGGTGAAGGCTGTAGGAGCAGTGGAGGGAAGG
GAAGAGGGACGGCCTCGGGTCCCCGCGGGTGAGAGCGGGATGCCGCGGAC
GGTGGTGCCGGCGGAGGAAGGGACGGAGGGAGGGGTCGTGGGTGGAGGGA
GGGGAGAGGAGGCGGTGCCGGCGGCGAGGGCCGAGTGA back to topCoding sequence (CDS) from alignment at chr8:107930..110717- >NO08G00270.1 ID=NO08G00270.1|Name=NO08G00270.1|organism=Nannochloropsis oceanica|type=CDS|length=2034bp|location=Sequence derived from alignment at chr8:107930..110717- (Nannochloropsis oceanica) ATGCCAGCCATCCGTCGCTCCCTCGTTCTCGGCCTCTCGGCCGCACTCCT CTCCCTCCTCTTCTCGACCGACGCCTTCCACATGCCTTCTCCCGCCCTGA GAAGAAGCACCCGACCCACCACTACCGTCAGCACCGCCTCATCGCAACGC ACCAACTCTCTCCCTTCTCTCTACGCTTCTGCGCCCTCCCCCACCTCTTC TTCTCCCTCCGCCTCCTTTGGCCAAGTGCTTGGGGAAATTTTACAAGACC TGTTTGCAGGCCCTGAAAAAGTGGAAGAAACCGACGTGCTCGTCGTTGGC TCGGGGATCAGTGGCTCCACCACCGCCTTTTACCTCAACAAGGCCGGGGT CAAGTGCTTGTTGACGGAGGCCAAGCCCGTGGTGGGTGGCAACGTGATAA GCAAAACGGACGGGCAGTTCCTTTGGGAGGAGGGGCCGAACTCGTTCCAA CCCACTTACCCCCTCATGCAAGCCACCGTGGACATGGGCCTGGCCAACGA CCTGGTCCTTGCCGACGCAACCCTGCCACGCTTTGTTTACTGGAAGGAGA AGCTCTATGCCCTCCCGGGGGGGTTGAGCGACATTCCCTTCTTCAACCTT CTCTCCATTCCCGGCCGGATCCGTGCAGGCCTTGGCGCCTTGGGCTTTAT TCGGGGGCCTCCCAAGGATAAGGAGGAGAGCGTGAAAGAATTTGTCACGC GGCATTTGGGCGCAGAGACGTTCGAGAGGATCATCGATCCCTTCGTCTCG GGTGTGTATGCAGGAGACCCGAGCAAGCTTTCCATGAAGGCTGCCTTGAA GAAGGTCAAACGGTTGGAAGAGCTCGGCGGGCGTGGTATCCTCGACGGGG CGCTCCTTCGAATCCAGGAGATAAAGCGCACCAAGCCCCCCGTCGTACCG GAGCATCCTGTCTACAAGGGAGGGCAGCTCGGCTCCTTCAAGAATGGGCT GCAATCGATGCCTTTGGCGGTGGCCAAGATCATGGGCAAGGACAAAGTCC GGGTTTCTTACAAATTGCTGAATGTGGTGAAGGGCAAGGCGGGAGGGTAC GAGGCCTTGTTCCAGACGCCGCAAGGACGGAGGAGGGTGAAGTGCAAGTC CATCGCTATCACTGCCCCGGCACACGTTGTGAACACTCTTCTCCGGCCCC TCATCCCTGAAGTGGCACGCCTGGCCGACGTGTACTACCCTCCGGTGGCC TCGGTCACACTGGCCTACCCCAAAACCGCCTTCCGGGAGCCTCTGCGGGG TTTCGGGAATCTGATTCCGAGGAGCATGAAGATTCGGACCTTGGGCACGA TCTGGTCCTCATCCCTCTTCCCCGGCCGCGCTCCCAAGGACTACAACATG CTTCTCTCCTACATTGGTGGCGCCCAGGACCCTGATATTGCCAAGCTGAG CTCCAAGGAGATCGTGGAGGAAGTCAACCGGGACATCAAGAAGGTTCTGC TCAAGCCTGACGCCCCTCCTCCCAAGGTGCTGGGCGTCCGCCTCTGGCCC ACCGCCATTCCGCAGTATAACAAAGGCCATCTCGACATCCTGGCGGCGGT CAAGGAGGGGGTCGACAAACATCCGGGTCTCTTTTTAGGTGGCAACTACA AGACGGGCGTCGCCTTTGGCGATTGCGTTACTTATGGCATGGAGGAAGCG GAGCAGATTCAGAAGTACCTAGCGTCCCTCCCTACTCCTGCTGCTGCTCC TGCTGTTGCTTCTGCTGCCGCTCCTGCTGTTGTTGCTGCTGCCGCTCCTA CTGCTGCTCCTGCTACCGCTCCTGTTTCCGTTGCTGCTGCTCCAGCGGTT GCTCTTGCTGCTGCTGCGGCTCCTGCTGCTGCTCCCGCCGCTCCTGCTGC TGCTCCGTTAGCGACGGTGAAGGCTGTAGGAGCAGTGGAGGGAAGGGAAG AGGGACGGCCTCGGGTCCCCGCGGGTGAGAGCGGGATGCCGCGGACGGTG GTGCCGGCGGAGGAAGGGACGGAGGGAGGGGTCGTGGGTGGAGGGAGGGG AGAGGAGGCGGTGCCGGCGGCGAGGGCCGAGTGA back to top
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