NO08G00250.2, NO08G00250.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00250.2
Unique NameNO08G00250.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length819
Alignment locationchr8:102498..103867 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:102498..103867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00250.2 vs.
Match: XP_005853763.1 (large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526]; EKU22597.1 large subunit ribosomal protein L31e [Nannochloropsis gaditana CCMP526]; EWM26499.1 60s ribosomal protein l31 [Nannochloropsis gaditana])

HSP 1 Score: 169.9 bits (429), Expect = 4.900e-39
Identity = 86/94 (91.49%), Postives = 89/94 (94.68%), Query Frame = 0 
Query:    1 MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKV 95
            MVKA KAPK DVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVD  LNK+IWKQGIRNVP+RVRVKLARRRNEDEEA EK+
Sbjct:    1 MVKATKAPKADVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALGTKDVRVDASLNKYIWKQGIRNVPYRVRVKLARRRNEDEEAAEKL 94
The following BLAST results are available for this feature:
BLAST of NO08G00250.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853763.14.900e-3991.49large subunit ribosomal protein L31e [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00250NO08G00250Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00250.2NO08G00250.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00250.2.cds1NO08G00250.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00250.2.cds2NO08G00250.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00250.2.cds3NO08G00250.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00250.2 ID=NO08G00250.2|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=819bp
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
CAGGCTCTACACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCA
AGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAG
GCCCTGGGCACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTAT
CTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCG
CCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGGTGAGGAGGAAG
GGAGGGAGGGAGGAAGGGACAGAAAAGAGGGGTGCGACAACAGGGAGATC
GACAAAAGGAAGATAGCAGGAGGGGTAGACACGGTTTAGAGAGAATCGGA
AGGAAAGGTTAGGAAGGAAGGAGGTGGGAAGGAAGGAGGGAGGGAAGGAA
GATATGGCCTTCGGGCACACATTATATTACTGTAGACGTACTGAACCCCC
TTTCCTCCCTCTCTCCCTCTCTCTTCCCATTTCTTTTATTTGACAGCTGT
ACACACTGGTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAAC
GCTTCCGTTGACGAGTAGAGGGTCCGGAGAAGGGAGGGAGGGAGGGAGGG
AGGGAGAGAAGGAGAGCCCTTACTGTCATAATTTTAATTGGTGCTTGACC
TTGGCTCTGGTGTGGATGCATCTCTTTTTCCGGGTGGATCAGAGAGGGAA
GGAGAGAGGGAGAAAAGGTTAATGTCTGAGGACCTTCAAAAAGAAGAAAT
CAGGAAGTTCTCCCCCATT
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protein sequence of NO08G00250.2

>NO08G00250.2-protein ID=NO08G00250.2-protein|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=polypeptide|length=119bp
MVKAAKAPKTDVVTRLYTINLHKRLHKITFKERAPRAIREIKKFAIKALG
TKDVRVDTGLNKFIWKQGIRNVPFRVRVKLARRRNEDEEATEKVRRKGGR
EEGTEKRGATTGRSTKGR*
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mRNA from alignment at chr8:102498..103867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00250.2 ID=NO08G00250.2|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=mRNA|length=1370bp|location=Sequence derived from alignment at chr8:102498..103867+ (Nannochloropsis oceanica)
ACAGGAAAGATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCAC
CAGGTATGTTGCATGGATACGGGCAACAAGGGGAGGAAGGGAGAGAGATG
GTGGAGGATGGGGAAGCTGAGGTTTCCAGGAGAAAAAGGAGACGGCCTTA
AGAAGCAGCCCCGCCATCTTACGTGCAAGTCCTGCTTGAAAGCCACCTCA
TGGGTCGGGACTGGTTTGCGGTGCTTGCTCCGGTCAAAATCGATTGTCTC
TCATGAAAATTCCCTACGCCCATGCCTACGCTCATTTCTCCTCGTCACCA
GAAGCAACCCTCCTCACTCACTCCTTCCTCTACGATCGATCGCCCCACTT
TCCCCTCTTTCCTGCACAGGCTCTACACCATCAACCTGCACAAGCGTCTG
CACAAGATCACCTTCAAGGAGCGTGCCCCCCGTGCCATTCGCGAGATCAA
GAAGTTTGCGATCAAGGCCCTGGGCACCAAGGATGTCCGCGTCGACACTG
GGTGCGTAGCCGCCCTCCCTCCCTCCCTCCCTCTCTCCGTCCCTCCCTCC
CTCCCTCTCTTCTCATTTTTTCTCCTTTCGTGGGGCTCATCTATTTTCCT
CCTGGGGCTCAGGCCATCAAATATGGACGGTCTAGTGTTTGCATGACCGC
GTCGTCACCAGTATCGCGTGCGTGCTTCCTCCACTCACTCACCTTCCTCC
CCTTTCTCCCTCCCTCTGCATCTCCTTCTCACTCAGCCTGAACAAGTTTA
TCTGGAAGCAAGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTC
GCCCGCCGACGCAACGAGGATGAGGAGGCGACGGAGAAGGTGAGGAGGAA
GGGAGGGAGGGAGGAAGGGACAGAAAAGAGGGGTGCGACAACAGGGAGAT
CGACAAAAGGAAGATAGCAGGAGGGGTAGACACGGTTTAGAGAGAATCGG
AAGGAAAGGTTAGGAAGGAAGGAGGTGGGAAGGAAGGAGGGAGGGAAGGA
AGATATGGCCTTCGGGCACACATTATATTACTGTAGACGTACTGAACCCC
CTTTCCTCCCTCTCTCCCTCTCTCTTCCCATTTCTTTTATTTGACAGCTG
TACACACTGGTGACGCTTGTGGAGGTGGACAGCTTCAAGGGCTTGCAGAA
CGCTTCCGTTGACGAGTAGAGGGTCCGGAGAAGGGAGGGAGGGAGGGAGG
GAGGGAGAGAAGGAGAGCCCTTACTGTCATAATTTTAATTGGTGCTTGAC
CTTGGCTCTGGTGTGGATGCATCTCTTTTTCCGGGTGGATCAGAGAGGGA
AGGAGAGAGGGAGAAAAGGTTAATGTCTGAGGACCTTCAAAAAGAAGAAA
TCAGGAAGTTCTCCCCCATT
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Coding sequence (CDS) from alignment at chr8:102498..103867+

>NO08G00250.2 ID=NO08G00250.2|Name=NO08G00250.2|organism=Nannochloropsis oceanica|type=CDS|length=357bp|location=Sequence derived from alignment at chr8:102498..103867+ (Nannochloropsis oceanica)
ATGGTCAAGGCAGCCAAGGCACCCAAGACCGACGTGGTCACCAGGCTCTA
CACCATCAACCTGCACAAGCGTCTGCACAAGATCACCTTCAAGGAGCGTG
CCCCCCGTGCCATTCGCGAGATCAAGAAGTTTGCGATCAAGGCCCTGGGC
ACCAAGGATGTCCGCGTCGACACTGGCCTGAACAAGTTTATCTGGAAGCA
AGGTATCCGCAATGTGCCTTTTAGGGTCCGCGTCAAGCTCGCCCGCCGAC
GCAACGAGGATGAGGAGGCGACGGAGAAGGTGAGGAGGAAGGGAGGGAGG
GAGGAAGGGACAGAAAAGAGGGGTGCGACAACAGGGAGATCGACAAAAGG
AAGATAG
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Synonyms
Publications