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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr8 | genome | chr8:40719..44456 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00110.1 vs.
Match: EWM26534.1 (hypothetical protein Naga_100141g2 [Nannochloropsis gaditana]) HSP 1 Score: 65.1 bits (157), Expect = 4.800e-7 Identity = 94/297 (31.65%), Postives = 138/297 (46.46%), Query Frame = 0
Query: 11 LRPFPPPNVIITVKHPPQGSSHPALRHLAGTMAQWVLPPTSLLLLLCLATTLTASNVG--ITNSVATSARTGSN--IYKVDEKIIGTVSDALPSPSRLLRLSPNQGGVRHKVIHDFLSSTFLVIAIVAMFLVVLCVINCSCNRLCPCLCGDEAAIVRAELMAMERRSV--GKDEEGEVEDVQGGTGGKDSV------ADEVGIAMVAGEEKKEGEEGDTKEGGGRMKIDDEESEASVSLSTPLKSLSSSLLALLAMKAWSSP--TAGISEGKQEERSKKVEQEMAQQQEEEKDAGRE 294
L+ + P + + P Q +S L H G MA++ +L+L+L + +T V + + TG + Y DEK + P RLLR + +Q V+H+V D +SS FL A+ +FL L VI C+C R+ PC+CG+EA R EL+ RS K+EE E D+ G GG D ++E V + ++ GEE +EG M EE +A + ST S + L LLA +A P A + +G Q KK E + E+ GRE
Sbjct: 18 LKSYLRPRHVFSSDLPSQDTS---LVHAMGRMAKFCRF-VALVLVLLFNSVVTGEYVRGPLRPESRDLSSTGLDGLTYSADEK-----HASAHFPPRLLRPARSQARVQHQVKRDMISSVFLGAALAFVFLAALVVIRCNCARVFPCICGEEALAARNELLKDVSRSFMKMKEEEEEEVDIVGEEGGPDGPPTRVHGSEEALDGQVLDKGRRGGEEEKKEEGAEAM----EEKKAPAAPSTTSLSEWVASLGLLAGQARVRPWAAAKVDDGAQ-TTGKKGEDRSRGEWEDRTQGGRE 300
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00110.1 ID=NO08G00110.1|Name=NO08G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3318bp
CGCGGGAATGGGGTCGAGGCCTGTGTGCATAGCATGAGGGGGGGAGAAGG
GGGGAGGAGGTGGCGGGAACATGAGCATGTGGGTGGGTGGTGGGATAATG
AAGTCCGGGCGGCATAGCCCAGACGCCCGGCATTTGCGCCCGTGCAAGCA
GGATGTGCATGTGCAGATCAGCAGACAGCAGTGTGGGTAGAGTGCGGCGT
CTGTTGAGAGTCTTCGCCTTCTTTGTTCCGGCGTCGTGCTTCCTTTCTGC
TACAGCATTTTGCTTTCAGACTCGACGCCCACCCCACCATCGCCCGTGGC
CGCTAAACCCCACGCTGGTTAAGGCATCAATAGGCAAATGTGTGTAGGCA
GTGGGCGGGGAGATTGTTGGGCCATGGGTGTCTGGGGATGGATGGAGGTG
TGAGTTTTTCAGAGGGCTTCGTTTTGATTGATCATCTACCAGTAACGAGT
CAGGCAGTTGCTGGGGCGAAGGAGAGGCGAAATCCTCAGTCACTGTACAT
GCCTCCCGGTACACATCTCGTGGTTCCCGGCACTCAGAAGACAGCGAATG
CTGTGCTGTACCTGGTACAGGCTCCATCCCCCCAGACGCCACTGAAATGA
AGCTTTTATCGTACCACACGGGCGAGCAAGATGATAAGGGGGCCTTCTCC
AAAATAATAATAACGCAAAGCGCGAAGAACTATGTATGTTTCGTTCACAC
CCCCTGTTGGAACATGCTTGTGGTGATGGTTGTGTTTCGCAATTCGGCAG
ATTTGTTGCTTTCAGCTGGCCTTGCGCGGCGTGCAAATTGCAATGCATTC
TTTCTCGTGCGTAACTCATGATTTTATCATTATCCACTGTTTTTGATCTT
CGCCCTTTCCCCCCACCCAACGTGATTATCACAGTAAAACATCCTCCTCA
AGGCTCTTCGCATCCCGCCCTACGCCACCTTGCCGGTACCATGGCCCAAT
GGGTGCTACCACCCACGAGCCTGCTCCTCCTGCTGTGCCTGGCCACCACC
CTCACCGCCAGCAATGTCGGCATTACCAACTCCGTGGCTACGTCCGCGCG
TACAGGTTCAAACATTTACAAAGTCGACGAGAAAATAATTGGGACGGTCT
CCGACGCCCTCCCCTCCCCTTCCCGCCTCCTCCGCCTCTCACCAAACCAG
GGGGGCGTCCGTCACAAAGTTATACACGACTTTCTCTCCTCCACTTTTCT
GGTCATTGCTATTGTGGCGATGTTCCTGGTAGTGTTGTGTGTGATAAATT
GTAGTTGCAATCGATTATGCCCTTGTCTGTGCGGGGACGAAGCAGCAATC
GTTCGAGCCGAGCTGATGGCGATGGAAAGGAGGTCAGTCGGAAAGGACGA
GGAAGGAGAGGTCGAGGACGTTCAGGGCGGAACAGGGGGCAAGGATAGCG
TGGCAGATGAAGTAGGGATCGCGATGGTAGCGGGAGAGGAGAAGAAAGAA
GGGGAGGAGGGAGACACGAAGGAGGGAGGGGGAAGGATGAAGATAGACGA
TGAGGAATCGGAGGCGTCCGTTTCACTTTCAACGCCCTTGAAGTCCTTGT
CCTCGTCGCTGCTAGCGCTGCTTGCGATGAAAGCATGGAGCTCACCGACA
GCAGGGATTTCTGAAGGAAAGCAGGAAGAGAGGTCGAAGAAGGTGGAGCA
GGAGATGGCGCAGCAGCAGGAGGAGGAGAAGGATGCAGGCAGGGAGGGAG
GGATGAAAAAATTGGGGGAAACGTTTGAGCTGCAAATGCAGCGGTTAAAG
GAAAGGGAGGGAGGGTTGGAAGGAGGGTTGATAGAAGAATCGAAGGAGTG
CTTGGCGGTGGAGTAAAAAAGATGGAGAGAGAAAGAGGCGATGAAGGGAG
GGAGATAGGGAGAATTACAGCGCCCTTGATTGGTTGGACGGGAGAGGAGA
TTCGAGGCGCGGGGCGGAATGGAGTGAAGTCTTATTGCGGAAATTTTGAA
GAAAGATAAGAGAAGACCTTAGATGACATAATATAGGGGGGGGGGATACC
AAGAGTGAAATAGTCACCGGTAGGAAATTTTCCTCCAAAAAGATTTGTCT
GTGAGGCAGCAATCGAAGAGAGAGGGGGAAGCGGAAACACGGAGACAGAG
AGACCTAAATGCGCTCCTCGGAAAGGAGGCAATAAAGCACCAAAACTGTA
GGAAAATGATCCCCATCGCATTGTAGAAAGGTTTCCTTATGCTTGCTCTT
CCGATTTACACTTTCTTTTTCCACTTGCTTGCCTTTCTTCGCCCTTTTCA
GCGCATCTCTTGGTCTGCCATGTGCAACTGCATCACCCCTGGCCGCCATT
TTCCCTGCGAACATGTAGTGATGTGGTTCCTTACTGACTTTTCTCGTCCT
GATTTAGCGTGCCATTGCCTCAGTAATTTGTCTTACACCATGGCCGACGC
AGGGCGGCCTCCACCTCCGTCCTTACTTCCTCGTTCTCTCCCTCTTCCCC
TTCCCCCTCCGACCGAGCTTGTCTCATGGGGCTTGCCACCCTTTCGTCTT
TCCTCTCCTCCGTCTCCCCCCACCCCCTCAACCCAGAATCGATTTTTAAT
CTTCATTTCCTCCATGGCCTCTCGCAGACGATGCTTCCTTATCATTGTCT
CCTGCGCAGTCGCTTTTCGTTGCTCTAATAAGTACGCCCTCTCTCGCTTG
ATTTCCTCGTACCGCGCCGTGTCCGCCTCCTGCCTTGCCAACAAACACGA
TTTTTCATACTCTTCCTTCCGCTGTATCCTTTTGACGTTCTCCTCCTTAT
CTTTCTGCCTCAGCTCCTTCTCCACTCGCATTAACAGCGTGGCTTGTGCT
CGCTCTGCTGCCACCTTAGCGTAGAAATGTGCGCGATTCTCTGCCCGAGT
CAACGTTTTCTGTATACGATCTTGCAGTCCTTGTACAGCACATTGATAGC
GCTCGTCCGCCTTGGCTTGCTTGGCCTTGCGCCCCTCGGCCGCTTTGGCC
GCTGCCTCCAACAGCTCCACGTGATTCTGCTCCGCGCGGGCAGCAGCCTC
GGCTGCTCTTGCTTGGTAATCTTTGCGTTTGGCCTCTTGGATCGCATGAT
TTCTGAGCAACGCACCTTGAATTCGTTTTTCAGCTTTGTTCCGTGCAGTC
TGGATCTCATTAGCTTTTGCTTCCTTCTTCGCCATCACCTGGGCCTTGAC
TCTGGCCTCGCGCGCCTCAATCTCGCGGCGTTGGGCCTCTCCTCGCCGTT
CCTGGTCTTTTAGAATCTCTTCTGTACGCTGCCGCAAGACCTCGAGCTTG
GCACGGCGCTCTTCTTCGCGAAGGACAGCTTTATGGCGTCGTATTCGCTC
TGCCGCCCGGGCCTCAGC back to topprotein sequence of NO08G00110.1 >NO08G00110.1-protein ID=NO08G00110.1-protein|Name=NO08G00110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MILSLSTVFDLRPFPPPNVIITVKHPPQGSSHPALRHLAGTMAQWVLPPT
SLLLLLCLATTLTASNVGITNSVATSARTGSNIYKVDEKIIGTVSDALPS
PSRLLRLSPNQGGVRHKVIHDFLSSTFLVIAIVAMFLVVLCVINCSCNRL
CPCLCGDEAAIVRAELMAMERRSVGKDEEGEVEDVQGGTGGKDSVADEVG
IAMVAGEEKKEGEEGDTKEGGGRMKIDDEESEASVSLSTPLKSLSSSLLA
LLAMKAWSSPTAGISEGKQEERSKKVEQEMAQQQEEEKDAGREGGMKKLG
ETFELQMQRLKEREGGLEGGLIEESKECLAVE* back to topmRNA from alignment at chr8:40719..44456- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00110.1 ID=NO08G00110.1|Name=NO08G00110.1|organism=Nannochloropsis oceanica|type=mRNA|length=3738bp|location=Sequence derived from alignment at chr8:40719..44456- (Nannochloropsis oceanica)
CGCGGGAATGGGGTCGAGGCCTGTGTGCATAGCATGAGGGGGGGAGAAGG
GGGGAGGAGGTGGCGGGAACATGAGCATGTGGGTGGGTGGTGGGATAATG
AAGTCCGGGCGGCATAGCCCAGACGCCCGGCATTTGCGCCCGTGCAAGCA
GGATGTGCATGTGCAGATCAGCAGACAGCAGTGTGGGTAGAGTGCGGCGT
CTGTTGAGAGTCTTCGCCTTCTTTGTTCCGGCGTCGTGCTTCCTTTCTGC
TACAGCATTTTGCTTTCAGACTCGACGCCCACCCCACCATCGCCCGTGGC
CGCTAAACCCCACGCTGGTTAAGGCATCAATAGGCAAATGTGTGTAGGCA
GTGGGCGGGGAGATTGTTGGGCCATGGGTGTCTGGGGATGGATGGAGGTG
TGAGTTTTTCAGAGGGCTTCGTTTTGATTGATCATCTACCAGTAACGAGT
CAGGCAGTTGCTGGGGCGAAGGAGAGGCGAAATCCTCAGTCACTGTACAT
GCCTCCCGGTACACATCTCGTGGTTCCCGGCACTCAGAAGACAGCGAATG
CTGTGCTGTACCTGGTACAGGCTCCATCCCCCCAGACGCCACTGAAATGA
AGCTTTTATCGTACCACACGGGCGAGCAAGATGATAAGGGGGCCTTCTCC
AAAATAATAATAACGCAAAGCGCGAAGAACTATGTATGTTTCGTTCACAC
CCCCTGTTGGAACATGCTTGTGGTGATGGTTGTGTTTCGCAATTCGGCAG
ATTTGTTGCTTTCAGCTGGCCTTGCGCGGCGTGCAAATTGCAATGCATTC
TTTCTCGTGCGTAACTCATGATTTTATCATTATCCACTGTTTTTGATCTT
CGCCCTTTCCCCCCACCCAACGTGATTATCACAGTAAAACATCCTCCTCA
AGGCTCTTCGCATCCCGCCCTACGCCACCTTGCCGGTACCATGGCCCAAT
GGGTGCTACCACCCACGAGCCTGCTCCTCCTGCTGTGCCTGGCCACCACC
CTCACCGCCAGCAATGTCGGCATTACCAACTCCGTGGCTACGTCCGCGCG
TACAGGTTCAAACATTTACAAAGTCGACGAGAAAATAATTGGTGCGTTGA
GTCGATCAGCAAATAGAGGTGGGAGGGAGGTAGCTGTGCCTATAGATATA
TGGAAGGGAAAGCCTGCCTGGCGGAGGATGTGATGCGGTACTCTCAATGT
GGAATGGGCTGCTGTCTCCTTGAGGTATGAGGGAGTTTGTGACGCAATCA
CTTGAGGCCCGTCTGCATCTCCCATTTGCACAGCTCTTTCGTATATATTT
CTGATCGTTGCTATGCGTTGACCGGCATCATTGCCTTTTCCACGCACTCT
CTGCTCTGCACCACTTTCTCCGTTTCTACCTCCCTTCTTCCAGCCCTCAA
TCTCTCCCTCCCTTCTCCTTCAAAACCAGTATCACTCATCTTATCTTATC
TTCTCCTCACCCACACACTCACCCATCCCTCAAATCGCTTCCTTGCCTTT
CTCCCGAAAAGGGACGGTCTCCGACGCCCTCCCCTCCCCTTCCCGCCTCC
TCCGCCTCTCACCAAACCAGGGGGGCGTCCGTCACAAAGTTATACACGAC
TTTCTCTCCTCCACTTTTCTGGTCATTGCTATTGTGGCGATGTTCCTGGT
AGTGTTGTGTGTGATAAATTGTAGTTGCAATCGATTATGCCCTTGTCTGT
GCGGGGACGAAGCAGCAATCGTTCGAGCCGAGCTGATGGCGATGGAAAGG
AGGTCAGTCGGAAAGGACGAGGAAGGAGAGGTCGAGGACGTTCAGGGCGG
AACAGGGGGCAAGGATAGCGTGGCAGATGAAGTAGGGATCGCGATGGTAG
CGGGAGAGGAGAAGAAAGAAGGGGAGGAGGGAGACACGAAGGAGGGAGGG
GGAAGGATGAAGATAGACGATGAGGAATCGGAGGCGTCCGTTTCACTTTC
AACGCCCTTGAAGTCCTTGTCCTCGTCGCTGCTAGCGCTGCTTGCGATGA
AAGCATGGAGCTCACCGACAGCAGGGATTTCTGAAGGAAAGCAGGAAGAG
AGGTCGAAGAAGGTGGAGCAGGAGATGGCGCAGCAGCAGGAGGAGGAGAA
GGATGCAGGCAGGGAGGGAGGGATGAAAAAATTGGGGGAAACGTTTGAGC
TGCAAATGCAGCGGTTAAAGGAAAGGGAGGGAGGGTTGGAAGGAGGGTTG
ATAGAAGAATCGAAGGAGTGCTTGGCGGTGGAGTAAAAAAGATGGAGAGA
GAAAGAGGCGATGAAGGGAGGGAGATAGGGAGAATTACAGCGCCCTTGAT
TGGTTGGACGGGAGAGGAGATTCGAGGCGCGGGGCGGAATGGAGTGAAGT
CTTATTGCGGAAATTTTGAAGAAAGATAAGAGAAGACCTTAGATGACATA
ATATAGGGGGGGGGGATACCAAGAGTGAAATAGTCACCGGTAGGAAATTT
TCCTCCAAAAAGATTTGTCTGTGAGGCAGCAATCGAAGAGAGAGGGGGAA
GCGGAAACACGGAGACAGAGAGACCTAAATGCGCTCCTCGGAAAGGAGGC
AATAAAGCACCAAAACTGTAGGAAAATGATCCCCATCGCATTGTAGAAAG
GTTTCCTTATGCTTGCTCTTCCGATTTACACTTTCTTTTTCCACTTGCTT
GCCTTTCTTCGCCCTTTTCAGCGCATCTCTTGGTCTGCCATGTGCAACTG
CATCACCCCTGGCCGCCATTTTCCCTGCGAACATGTAGTGATGTGGTTCC
TTACTGACTTTTCTCGTCCTGATTTAGCGTGCCATTGCCTCAGTAATTTG
TCTTACACCATGGCCGACGCAGGGCGGCCTCCACCTCCGTCCTTACTTCC
TCGTTCTCTCCCTCTTCCCCTTCCCCCTCCGACCGAGCTTGTCTCATGGG
GCTTGCCACCCTTTCGTCTTTCCTCTCCTCCGTCTCCCCCCACCCCCTCA
ACCCAGAATCGATTTTTAATCTTCATTTCCTCCATGGCCTCTCGCAGACG
ATGCTTCCTTATCATTGTCTCCTGCGCAGTCGCTTTTCGTTGCTCTAATA
AGTACGCCCTCTCTCGCTTGATTTCCTCGTACCGCGCCGTGTCCGCCTCC
TGCCTTGCCAACAAACACGATTTTTCATACTCTTCCTTCCGCTGTATCCT
TTTGACGTTCTCCTCCTTATCTTTCTGCCTCAGCTCCTTCTCCACTCGCA
TTAACAGCGTGGCTTGTGCTCGCTCTGCTGCCACCTTAGCGTAGAAATGT
GCGCGATTCTCTGCCCGAGTCAACGTTTTCTGTATACGATCTTGCAGTCC
TTGTACAGCACATTGATAGCGCTCGTCCGCCTTGGCTTGCTTGGCCTTGC
GCCCCTCGGCCGCTTTGGCCGCTGCCTCCAACAGCTCCACGTGATTCTGC
TCCGCGCGGGCAGCAGCCTCGGCTGCTCTTGCTTGGTAATCTTTGCGTTT
GGCCTCTTGGATCGCATGATTTCTGAGCAACGCACCTTGAATTCGTTTTT
CAGCTTTGTTCCGTGCAGTCTGGATCTCATTAGCTTTTGCTTCCTTCTTC
GCCATCACCTGGGCCTTGACTCTGGCCTCGCGCGCCTCAATCTCGCGGCG
TTGGGCCTCTCCTCGCCGTTCCTGGTCTTTTAGAATCTCTTCTGTACGCT
GCCGCAAGACCTCGAGCTTGGCACGGCGCTCTTCTTCGCGAAGGACAGCT
TTATGGCGTCGTATTCGCTCTGCCGCCCGGGCCTCAGC back to topCoding sequence (CDS) from alignment at chr8:40719..44456- >NO08G00110.1 ID=NO08G00110.1|Name=NO08G00110.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr8:40719..44456- (Nannochloropsis oceanica)
ATGATTTTATCATTATCCACTGTTTTTGATCTTCGCCCTTTCCCCCCACC
CAACGTGATTATCACAGTAAAACATCCTCCTCAAGGCTCTTCGCATCCCG
CCCTACGCCACCTTGCCGGTACCATGGCCCAATGGGTGCTACCACCCACG
AGCCTGCTCCTCCTGCTGTGCCTGGCCACCACCCTCACCGCCAGCAATGT
CGGCATTACCAACTCCGTGGCTACGTCCGCGCGTACAGGTTCAAACATTT
ACAAAGTCGACGAGAAAATAATTGGGACGGTCTCCGACGCCCTCCCCTCC
CCTTCCCGCCTCCTCCGCCTCTCACCAAACCAGGGGGGCGTCCGTCACAA
AGTTATACACGACTTTCTCTCCTCCACTTTTCTGGTCATTGCTATTGTGG
CGATGTTCCTGGTAGTGTTGTGTGTGATAAATTGTAGTTGCAATCGATTA
TGCCCTTGTCTGTGCGGGGACGAAGCAGCAATCGTTCGAGCCGAGCTGAT
GGCGATGGAAAGGAGGTCAGTCGGAAAGGACGAGGAAGGAGAGGTCGAGG
ACGTTCAGGGCGGAACAGGGGGCAAGGATAGCGTGGCAGATGAAGTAGGG
ATCGCGATGGTAGCGGGAGAGGAGAAGAAAGAAGGGGAGGAGGGAGACAC
GAAGGAGGGAGGGGGAAGGATGAAGATAGACGATGAGGAATCGGAGGCGT
CCGTTTCACTTTCAACGCCCTTGAAGTCCTTGTCCTCGTCGCTGCTAGCG
CTGCTTGCGATGAAAGCATGGAGCTCACCGACAGCAGGGATTTCTGAAGG
AAAGCAGGAAGAGAGGTCGAAGAAGGTGGAGCAGGAGATGGCGCAGCAGC
AGGAGGAGGAGAAGGATGCAGGCAGGGAGGGAGGGATGAAAAAATTGGGG
GAAACGTTTGAGCTGCAAATGCAGCGGTTAAAGGAAAGGGAGGGAGGGTT
GGAAGGAGGGTTGATAGAAGAATCGAAGGAGTGCTTGGCGGTGGAGTAA back to top
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