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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr8 | genome | chr8:26476..29797 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO08G00070.2 vs.
Match: EWM26465.1 (hypothetical protein Naga_100045g14 [Nannochloropsis gaditana]) HSP 1 Score: 184.5 bits (467), Expect = 4.700e-43 Identity = 112/214 (52.34%), Postives = 138/214 (64.49%), Query Frame = 0
Query: 73 PSSRGRAQQSKAKTNLNAAS-----ASRVPPAAPTNSQGEKIFIPSCRASRIKQPARRKDWMRGL----NGDDSSDDSLIHSSSDEDEDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGLTGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHTCICRYLEVKKGVAPLRRQENGNCAREA 278
PS+ R Q K NAA+ S P+ T+ +G+K+FIPSCRASRIKQPARRKD+MRGL DDSSDDSLI+ SS++DEDR L +T QL DG D+ FAD LD I+KLN+ACPLSRTGL L + GI+ ED +I + CKGN QGF SW+AM AHA S+QD YH+ I R+LE KGVAP++ G A +A
Sbjct: 37 PSTGSRHAQGNYKQQRNAAADIGPYCSTGTPS--TDGRGKKVFIPSCRASRIKQPARRKDFMRGLYPCSQSDDSSDDSLIYFSSEDDEDRTLSQVTSQLHTKCDLQDG--DLLHKFADKLDVIVKLNVACPLSRTGLERLKSRGILDEEDSQEIAALVKACKGNVQGFASWKAMHAHACSYQDAYHSRIRRFLEESKGVAPVKTSSVGKVAPDA 246
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp ACCACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCCC TCACCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGC TGACTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGT CACGTACCACTCTGTCGCCAAAGACTCTCGACCACCGTGCCGATACCAGT CCACCGCTCCAGTCGCAAGCCATGTATAACAACGACGAGGACGAAGGAGG CTGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGC AGCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCAACGTTTGCT CCTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGAC TTCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCG GCCGCGCCCAGCAATCCAAGGCGAAGACAAATTTAAACGCCGCATCTGCC TCCCGCGTCCCCCCAGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTT TATTCCATCCTGCCGTGCCTCGAGGATAAAGCAGCCGGCCCGGCGCAAGG ACTGGATGCGAGGTCTTAACGGCGACGACTCCTCGGACGACTCCCTGATC CACTCCTCCTCAGATGAGGACGAGGACCGCGACCTGGTCCATCTAACGGA GCAGCTCTGCATGCCGGTGATCGATGTGGACGGGAAGCAGGATGTCAATC CCTGCTTCGCCGACAACCTCGACCAAATCATCAAGCTCAACATCGCCTGT CCCCTCTCCCGCACGGGCCTGACTGGCCTCGTGAACTCAGGGATTATGTG CGGGGAGGATCGGGACGATATTGAGGGCGACGCCGAGCTTTGTAAGGGCA ACACGCAGGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGCCCGGTCC TTCCAAGACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAA GGGCGTCGCCCCCCTCCGGCGCCAGGAGAACGGTAACTGTGCGAGGGAGG CTGAGAGGGGAGGGAGGGAGAGGGAGTATGGAGTTATGTTGATGTGAATG ATGTTTGAAACCCTGCACTCTCCTCAGTCTCTCACTTATTCAGTCACAGC ACCTTATCTGACCCTCCCCCCCTCTCTCGCGTCCCATCCTGCCCCCACAT TAGCCACGTCTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAG GCCCTCTATCGGTCGTCGTCCTTCCCGACACGGCTCAAGCTCGCTAACCC GCCTTTGGTAGAGCTGACAGGCCTTAATCAGAGGCAATGCAATAAGGTGG GCAGGGAACGTGGGCGAGGGAGACGGCTGAGTGCCAGAGGCCTAACTTTG ACAGAGAGAGGGTTCGCGCCTTTTCTTCTAATCTACCCAACCCCCTCCCG GTGCGATACAATCCACAGGCGGAGATCTTGCAGTACATGGTCAACGCCCT TCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGATTC ACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCCGCTGTCGAA TTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCATCCTCACACG CCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCCTCATTCCCC TCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCCGTCTTTATA TTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCTCCTTGAGAT TCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCTACCCCAGGC TTTACAAGAAGCTCCATGACGACTAAAGGCTTGGAGGGGGGAGGGAACAA AAAAAAACAGAAAGGGTAATGCCTTGACACATGAATGTATAGCGATGCAT ATGCAGTATTCCTAGGCCGGAAACCTGCAATGGTCGAGGATTTTGTTGTC CATGTCTAAAAGCGAAACCTGTTTGTTTGAAACACAGCAGAATTCTTAAT CAATATTCAGCAGCCGAACACATACACAAAAGAAAACCACAAATCTATGC ACGCTTTCCGAAACGTAGGGAAACATGAAGAAAAAGACAGCAGTCTCTAC TAACTTCCATGCC back to topprotein sequence of NO08G00070.2 >NO08G00070.2-protein ID=NO08G00070.2-protein|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp MYNNDEDEGGWSKAPTRGGAQHKSKPQQNQPKRPNASRGPTFAPSLKHYN SSSSSSSHATSSPSFSSPNPHYPSSRGRAQQSKAKTNLNAASASRVPPAA PTNSQGEKIFIPSCRASRIKQPARRKDWMRGLNGDDSSDDSLIHSSSDED EDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGL TGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHT CICRYLEVKKGVAPLRRQENGNCAREAERGGREREYGVMLM* back to topmRNA from alignment at chr8:26476..29797+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=3322bp|location=Sequence derived from alignment at chr8:26476..29797+ (Nannochloropsis oceanica) ACCACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCCC
TCACCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGC
TGACTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGT
CACGTACCACTCTGTCGCCAAAGACTCTCGACCACCGTGCCGATACCAGT
CCACCGCTCCAGTCGCAAGCCATGTATAACAACGACGAGGACGAAGGAGG
CTGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGC
AGCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCAACGTTTGCT
CCTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGAC
TTCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCG
GCCGCGCCCAGCAATCCAAGGCGAAGACAAATTTAAACGCCGCATCTGCC
TCCCGCGTCCCCCCAGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTT
TATTCCATCCTGCCGTGCCTCGAGGATAAAGCAGCCGGCCCGGCGCAAGG
ACTGGATGCGAGGTCTTAACGTACGGAGCGAGGGAGGGAGGGAGGGCGGC
AGACGGGGGAAGGAGGGAGGGAACTCATTTTTAAGTTAGGGAGGATACTC
TTCTGGCCCCTTTGTCTGTACAAGTTCCCAGTGACTAATCTGTCGTTAAC
AAGCTAGCGCACCTTCCTCCCTCCCTCCCTCCTCCCTAGGGCGACGACTC
CTCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGACGAGGACCGCG
ACCTGGTCCATCTAACGGAGCAGCTCTGCATGCCGTAAGAAGCAGCGAGG
AGCAGGGACAGCGGGAGGGAGGGTGGGAGGGAGGGGAAAGGCGAGAGAGG
TCGAGTCAGTCTTGTGGCTCAGTTTCTGGCCACCTGATCTTTTCTTGCCA
TCCCCTTTTTCTCCCTTCCCACTTCCCTTCCTCCCTATCTCCCTGCTTTC
CCCTCCTAGGGTGATCGATGTGGACGGGAAGCAGGATGTCAATCCCTGCT
TCGCCGACAACCTCGACCAAATCATCAAGCTCAACGTAGGAAATAAATCG
CCGTCTTCCTCCCTCCTTCCCTTCCCACCGGTCGCTTCTGTCAGGGTGTC
GAGTAACAAACTCTCCCTCACTCCCTCCCTTCCTCCCTCTCTCAATTCTT
TCCTCCCTCCCTCACTCCCTCTCTCTAGATCGCCTGTCCCCTCTCCCGCA
CGGGCCTGACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGG
GACGATATTGAGGGCGACGCCGAGGTACTTGATGATAGCCCGCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCTTCCTTTTTCAAAGCC
CTTGTTGTGGAAGCAAGACGCCCTTTGACTAACTCGTCATTCCTTCTACC
CTTCCTTCCTTCCTCTCTCCCTCACTCACTCCTTCTCTTCCTTCCTTCCT
CCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCCCTCCCTCCCTCC
CTCCCTCCCTTCCTTCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCTTCGCCCAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTGGGAG
GCCATGGCTGCCCATGCCCGGTCCTTCCAAGGTGAGCAAGTGCCGGGGAG
GGAGGGAGGGAGGGGGGGCGGGAAGGAATGAAAATAGCGCGTGGCCTTGT
CTTGCCCTTGTTATTCATTGAGACCTTTCCCTCTCCTTTTCTCCTTCCCT
CGCTTCCTTTCTCTCTCCGTGTTAAAAAAATCTGCCGCACGTGCACCCGC
TGCTGTCTGACTGCAAACAATCTGACTGACTCCTTTCTTCTTTCCATCCC
TCCCTCCCTCGCTTCCCCTCTCCATTCCTCCTCGTTCTATTCTTCTAGAC
ATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGC
CCCCCTCCGGCGCCAGGAGAACGGTAACTGTGCGAGGGAGGCTGAGAGGG
GAGGGAGGGAGAGGGAGTATGGAGTTATGTTGATGTGAATGATGTTTGAA
ACCCTGCACTCTCCTCAGTCTCTCACTTATTCAGTCACAGCACCTTATCT
GACCCTCCCCCCCTCTCTCGCGTCCCATCCTGCCCCCACATTAGCCACGT
CTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCTAT
CGGTCGTCGTCCTTCCCGACACGGCTCAAGCTCGCTAACCCGCCTTTGGT
AGAGCTGACAGGCCTTAATCAGAGGCAATGCAATAAGGTGGGCAGGGAAC
GTGGGCGAGGGAGACGGCTGAGTGCCAGAGGCCTAACTTTGACAGAGAGA
GGGTTCGCGCCTTTTCTTCTAATCTACCCAACCCCCTCCCGGTGCGATAC
AATCCACAGGCGGAGATCTTGCAGTACATGGTCAACGCCCTTCTCGAGAT
TCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGGTATGGATTCCTT
GTTCCTCCCTCCCGCCTTCCCTTCCTCCCTCCCCTGATTAATTCCTCCCT
GCTTTTTGCCCACCCACCCTTCCTTCCTCCTTTTCTACCTCCCTCCCTCC
CTCAGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCC
GCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCAT
CCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCC
TCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCC
GTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCT
CCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCT
ACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAAGGCTTGGAGGGGGG
AGGGAACAAAAAAAAACAGAAAGGGTAATGCCTTGACACATGAATGTATA
GCGATGCATATGCAGTATTCCTAGGCCGGAAACCTGCAATGGTCGAGGAT
TTTGTTGTCCATGTCTAAAAGCGAAACCTGTTTGTTTGAAACACAGCAGA
ATTCTTAATCAATATTCAGCAGCCGAACACATACACAAAAGAAAACCACA
AATCTATGCACGCTTTCCGAAACGTAGGGAAACATGAAGAAAAAGACAGC
AGTCTCTACTAACTTCCATGCC back to topCoding sequence (CDS) from alignment at chr8:26476..29797+ >NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr8:26476..29797+ (Nannochloropsis oceanica) ATGTATAACAACGACGAGGACGAAGGAGGCTGGAGCAAGGCACCCACACG TGGAGGAGCACAACACAAGTCAAAGCCGCAGCAGAATCAGCCGAAGAGAC CTAATGCCTCCCGTGGCCCAACGTTTGCTCCTTCGCTCAAGCATTACAAT TCCTCCTCCTCCTCCTCTTCCCATGCGACTTCTTCCCCGTCCTTCTCCTC ACCCAACCCGCACTATCCCTCCTCGCGCGGCCGCGCCCAGCAATCCAAGG CGAAGACAAATTTAAACGCCGCATCTGCCTCCCGCGTCCCCCCAGCCGCT CCCACCAACTCTCAGGGGGAAAAGATCTTTATTCCATCCTGCCGTGCCTC GAGGATAAAGCAGCCGGCCCGGCGCAAGGACTGGATGCGAGGTCTTAACG GCGACGACTCCTCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGAC GAGGACCGCGACCTGGTCCATCTAACGGAGCAGCTCTGCATGCCGGTGAT CGATGTGGACGGGAAGCAGGATGTCAATCCCTGCTTCGCCGACAACCTCG ACCAAATCATCAAGCTCAACATCGCCTGTCCCCTCTCCCGCACGGGCCTG ACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGGGACGATAT TGAGGGCGACGCCGAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGT GGGAGGCCATGGCTGCCCATGCCCGGTCCTTCCAAGACATCTATCACACC TGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGCCCCCCTCCGGCG CCAGGAGAACGGTAACTGTGCGAGGGAGGCTGAGAGGGGAGGGAGGGAGA GGGAGTATGGAGTTATGTTGATGTGA back to top
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