NO08G00070.2, NO08G00070.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00070.2
Unique NameNO08G00070.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2163
Alignment locationchr8:26476..29797 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:26476..29797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO08G00070.2 vs.
Match: EWM26465.1 (hypothetical protein Naga_100045g14 [Nannochloropsis gaditana])

HSP 1 Score: 184.5 bits (467), Expect = 4.700e-43
Identity = 112/214 (52.34%), Postives = 138/214 (64.49%), Query Frame = 0
Query:   73 PSSRGRAQQSKAKTNLNAAS-----ASRVPPAAPTNSQGEKIFIPSCRASRIKQPARRKDWMRGL----NGDDSSDDSLIHSSSDEDEDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGLTGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHTCICRYLEVKKGVAPLRRQENGNCAREA 278
            PS+  R  Q   K   NAA+      S   P+  T+ +G+K+FIPSCRASRIKQPARRKD+MRGL      DDSSDDSLI+ SS++DEDR L  +T QL       DG  D+   FAD LD I+KLN+ACPLSRTGL  L + GI+  ED  +I    + CKGN QGF SW+AM AHA S+QD YH+ I R+LE  KGVAP++    G  A +A
Sbjct:   37 PSTGSRHAQGNYKQQRNAAADIGPYCSTGTPS--TDGRGKKVFIPSCRASRIKQPARRKDFMRGLYPCSQSDDSSDDSLIYFSSEDDEDRTLSQVTSQLHTKCDLQDG--DLLHKFADKLDVIVKLNVACPLSRTGLERLKSRGILDEEDSQEIAALVKACKGNVQGFASWKAMHAHACSYQDAYHSRIRRFLEESKGVAPVKTSSVGKVAPDA 246          
The following BLAST results are available for this feature:
BLAST of NO08G00070.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26465.14.700e-4352.34hypothetical protein Naga_100045g14 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00070NO08G00070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00070.2NO08G00070.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00070.2.cds1NO08G00070.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00070.2.cds2NO08G00070.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00070.2.cds3NO08G00070.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00070.2.cds4NO08G00070.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00070.2.cds5NO08G00070.2.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00070.2.cds6NO08G00070.2.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=2163bp
ACCACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCCC
TCACCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGC
TGACTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGT
CACGTACCACTCTGTCGCCAAAGACTCTCGACCACCGTGCCGATACCAGT
CCACCGCTCCAGTCGCAAGCCATGTATAACAACGACGAGGACGAAGGAGG
CTGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGC
AGCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCAACGTTTGCT
CCTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGAC
TTCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCG
GCCGCGCCCAGCAATCCAAGGCGAAGACAAATTTAAACGCCGCATCTGCC
TCCCGCGTCCCCCCAGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTT
TATTCCATCCTGCCGTGCCTCGAGGATAAAGCAGCCGGCCCGGCGCAAGG
ACTGGATGCGAGGTCTTAACGGCGACGACTCCTCGGACGACTCCCTGATC
CACTCCTCCTCAGATGAGGACGAGGACCGCGACCTGGTCCATCTAACGGA
GCAGCTCTGCATGCCGGTGATCGATGTGGACGGGAAGCAGGATGTCAATC
CCTGCTTCGCCGACAACCTCGACCAAATCATCAAGCTCAACATCGCCTGT
CCCCTCTCCCGCACGGGCCTGACTGGCCTCGTGAACTCAGGGATTATGTG
CGGGGAGGATCGGGACGATATTGAGGGCGACGCCGAGCTTTGTAAGGGCA
ACACGCAGGGCTTCAACTCGTGGGAGGCCATGGCTGCCCATGCCCGGTCC
TTCCAAGACATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAA
GGGCGTCGCCCCCCTCCGGCGCCAGGAGAACGGTAACTGTGCGAGGGAGG
CTGAGAGGGGAGGGAGGGAGAGGGAGTATGGAGTTATGTTGATGTGAATG
ATGTTTGAAACCCTGCACTCTCCTCAGTCTCTCACTTATTCAGTCACAGC
ACCTTATCTGACCCTCCCCCCCTCTCTCGCGTCCCATCCTGCCCCCACAT
TAGCCACGTCTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAG
GCCCTCTATCGGTCGTCGTCCTTCCCGACACGGCTCAAGCTCGCTAACCC
GCCTTTGGTAGAGCTGACAGGCCTTAATCAGAGGCAATGCAATAAGGTGG
GCAGGGAACGTGGGCGAGGGAGACGGCTGAGTGCCAGAGGCCTAACTTTG
ACAGAGAGAGGGTTCGCGCCTTTTCTTCTAATCTACCCAACCCCCTCCCG
GTGCGATACAATCCACAGGCGGAGATCTTGCAGTACATGGTCAACGCCCT
TCTCGAGATTCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGATTC
ACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCCGCTGTCGAA
TTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCATCCTCACACG
CCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCCTCATTCCCC
TCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCCGTCTTTATA
TTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCTCCTTGAGAT
TCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCTACCCCAGGC
TTTACAAGAAGCTCCATGACGACTAAAGGCTTGGAGGGGGGAGGGAACAA
AAAAAAACAGAAAGGGTAATGCCTTGACACATGAATGTATAGCGATGCAT
ATGCAGTATTCCTAGGCCGGAAACCTGCAATGGTCGAGGATTTTGTTGTC
CATGTCTAAAAGCGAAACCTGTTTGTTTGAAACACAGCAGAATTCTTAAT
CAATATTCAGCAGCCGAACACATACACAAAAGAAAACCACAAATCTATGC
ACGCTTTCCGAAACGTAGGGAAACATGAAGAAAAAGACAGCAGTCTCTAC
TAACTTCCATGCC
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protein sequence of NO08G00070.2

>NO08G00070.2-protein ID=NO08G00070.2-protein|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MYNNDEDEGGWSKAPTRGGAQHKSKPQQNQPKRPNASRGPTFAPSLKHYN
SSSSSSSHATSSPSFSSPNPHYPSSRGRAQQSKAKTNLNAASASRVPPAA
PTNSQGEKIFIPSCRASRIKQPARRKDWMRGLNGDDSSDDSLIHSSSDED
EDRDLVHLTEQLCMPVIDVDGKQDVNPCFADNLDQIIKLNIACPLSRTGL
TGLVNSGIMCGEDRDDIEGDAELCKGNTQGFNSWEAMAAHARSFQDIYHT
CICRYLEVKKGVAPLRRQENGNCAREAERGGREREYGVMLM*
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mRNA from alignment at chr8:26476..29797+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=mRNA|length=3322bp|location=Sequence derived from alignment at chr8:26476..29797+ (Nannochloropsis oceanica)
ACCACAGATCTTGCTACGCTCCGTTTGCTCTTCCGGTTTCACACCTCCCC TCACCCCGTCGAGTTCGCTGAGCGGAGATCGAAAGTAAGCGACCTCCTGC TGACTTTTCTCACTGCTTTGCCCTCTGCCCACGACAAGTACTGGGTCTGT CACGTACCACTCTGTCGCCAAAGACTCTCGACCACCGTGCCGATACCAGT CCACCGCTCCAGTCGCAAGCCATGTATAACAACGACGAGGACGAAGGAGG CTGGAGCAAGGCACCCACACGTGGAGGAGCACAACACAAGTCAAAGCCGC AGCAGAATCAGCCGAAGAGACCTAATGCCTCCCGTGGCCCAACGTTTGCT CCTTCGCTCAAGCATTACAATTCCTCCTCCTCCTCCTCTTCCCATGCGAC TTCTTCCCCGTCCTTCTCCTCACCCAACCCGCACTATCCCTCCTCGCGCG GCCGCGCCCAGCAATCCAAGGCGAAGACAAATTTAAACGCCGCATCTGCC TCCCGCGTCCCCCCAGCCGCTCCCACCAACTCTCAGGGGGAAAAGATCTT TATTCCATCCTGCCGTGCCTCGAGGATAAAGCAGCCGGCCCGGCGCAAGG ACTGGATGCGAGGTCTTAACGTACGGAGCGAGGGAGGGAGGGAGGGCGGC AGACGGGGGAAGGAGGGAGGGAACTCATTTTTAAGTTAGGGAGGATACTC TTCTGGCCCCTTTGTCTGTACAAGTTCCCAGTGACTAATCTGTCGTTAAC AAGCTAGCGCACCTTCCTCCCTCCCTCCCTCCTCCCTAGGGCGACGACTC CTCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGACGAGGACCGCG ACCTGGTCCATCTAACGGAGCAGCTCTGCATGCCGTAAGAAGCAGCGAGG AGCAGGGACAGCGGGAGGGAGGGTGGGAGGGAGGGGAAAGGCGAGAGAGG TCGAGTCAGTCTTGTGGCTCAGTTTCTGGCCACCTGATCTTTTCTTGCCA TCCCCTTTTTCTCCCTTCCCACTTCCCTTCCTCCCTATCTCCCTGCTTTC CCCTCCTAGGGTGATCGATGTGGACGGGAAGCAGGATGTCAATCCCTGCT TCGCCGACAACCTCGACCAAATCATCAAGCTCAACGTAGGAAATAAATCG CCGTCTTCCTCCCTCCTTCCCTTCCCACCGGTCGCTTCTGTCAGGGTGTC GAGTAACAAACTCTCCCTCACTCCCTCCCTTCCTCCCTCTCTCAATTCTT TCCTCCCTCCCTCACTCCCTCTCTCTAGATCGCCTGTCCCCTCTCCCGCA CGGGCCTGACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGG GACGATATTGAGGGCGACGCCGAGGTACTTGATGATAGCCCGCCCTCCCT CCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCTCCTTCCTTTTTCAAAGCC CTTGTTGTGGAAGCAAGACGCCCTTTGACTAACTCGTCATTCCTTCTACC CTTCCTTCCTTCCTCTCTCCCTCACTCACTCCTTCTCTTCCTTCCTTCCT CCCTCCCTCCCTCCCTCCCTCCCTTCCTTCCTTTCTCCCTCCCTCCCTCC CTCCCTCCCTTCCTTCCTTTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCTTCGCCCAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGTGGGAG GCCATGGCTGCCCATGCCCGGTCCTTCCAAGGTGAGCAAGTGCCGGGGAG GGAGGGAGGGAGGGGGGGCGGGAAGGAATGAAAATAGCGCGTGGCCTTGT CTTGCCCTTGTTATTCATTGAGACCTTTCCCTCTCCTTTTCTCCTTCCCT CGCTTCCTTTCTCTCTCCGTGTTAAAAAAATCTGCCGCACGTGCACCCGC TGCTGTCTGACTGCAAACAATCTGACTGACTCCTTTCTTCTTTCCATCCC TCCCTCCCTCGCTTCCCCTCTCCATTCCTCCTCGTTCTATTCTTCTAGAC ATCTATCACACCTGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGC CCCCCTCCGGCGCCAGGAGAACGGTAACTGTGCGAGGGAGGCTGAGAGGG GAGGGAGGGAGAGGGAGTATGGAGTTATGTTGATGTGAATGATGTTTGAA ACCCTGCACTCTCCTCAGTCTCTCACTTATTCAGTCACAGCACCTTATCT GACCCTCCCCCCCTCTCTCGCGTCCCATCCTGCCCCCACATTAGCCACGT CTGCCATCACCCCTTCCACCGCCGCTCCTACTGATCTGGAGGCCCTCTAT CGGTCGTCGTCCTTCCCGACACGGCTCAAGCTCGCTAACCCGCCTTTGGT AGAGCTGACAGGCCTTAATCAGAGGCAATGCAATAAGGTGGGCAGGGAAC GTGGGCGAGGGAGACGGCTGAGTGCCAGAGGCCTAACTTTGACAGAGAGA GGGTTCGCGCCTTTTCTTCTAATCTACCCAACCCCCTCCCGGTGCGATAC AATCCACAGGCGGAGATCTTGCAGTACATGGTCAACGCCCTTCTCGAGAT TCAAGACGCCTCCGACGGGGGCTGCCTGGTCCTCTCGGTATGGATTCCTT GTTCCTCCCTCCCGCCTTCCCTTCCTCCCTCCCCTGATTAATTCCTCCCT GCTTTTTGCCCACCCACCCTTCCTTCCTCCTTTTCTACCTCCCTCCCTCC CTCAGATTCACCCTAAGTTTGGCAACGGGGGCAAGTTTATGAAGCGGGCC GCTGTCGAATTTCGCACCTCCAACAAGGGCAGGGCTGCCGCTCACTGCAT CCTCACACGCCTCTCCAACAGCAAGGTATGGACCCCCTCCCTTCCCTCCC TCATTCCCCTCCTCATTCCCTTTATTTCGCAAGATACCAGCTTAACCTCC GTCTTTATATTCTTCCAACCCTTCCTCCTTCCCTTTCTCCCCCCCTTCCT CCTTGAGATTCTCCACCCCATCCATGACGCGGATGCCATGCGTGCCAGCT ACCCCAGGCTTTACAAGAAGCTCCATGACGACTAAAGGCTTGGAGGGGGG AGGGAACAAAAAAAAACAGAAAGGGTAATGCCTTGACACATGAATGTATA GCGATGCATATGCAGTATTCCTAGGCCGGAAACCTGCAATGGTCGAGGAT TTTGTTGTCCATGTCTAAAAGCGAAACCTGTTTGTTTGAAACACAGCAGA ATTCTTAATCAATATTCAGCAGCCGAACACATACACAAAAGAAAACCACA AATCTATGCACGCTTTCCGAAACGTAGGGAAACATGAAGAAAAAGACAGC AGTCTCTACTAACTTCCATGCC
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Coding sequence (CDS) from alignment at chr8:26476..29797+

>NO08G00070.2 ID=NO08G00070.2|Name=NO08G00070.2|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at chr8:26476..29797+ (Nannochloropsis oceanica)
ATGTATAACAACGACGAGGACGAAGGAGGCTGGAGCAAGGCACCCACACG
TGGAGGAGCACAACACAAGTCAAAGCCGCAGCAGAATCAGCCGAAGAGAC
CTAATGCCTCCCGTGGCCCAACGTTTGCTCCTTCGCTCAAGCATTACAAT
TCCTCCTCCTCCTCCTCTTCCCATGCGACTTCTTCCCCGTCCTTCTCCTC
ACCCAACCCGCACTATCCCTCCTCGCGCGGCCGCGCCCAGCAATCCAAGG
CGAAGACAAATTTAAACGCCGCATCTGCCTCCCGCGTCCCCCCAGCCGCT
CCCACCAACTCTCAGGGGGAAAAGATCTTTATTCCATCCTGCCGTGCCTC
GAGGATAAAGCAGCCGGCCCGGCGCAAGGACTGGATGCGAGGTCTTAACG
GCGACGACTCCTCGGACGACTCCCTGATCCACTCCTCCTCAGATGAGGAC
GAGGACCGCGACCTGGTCCATCTAACGGAGCAGCTCTGCATGCCGGTGAT
CGATGTGGACGGGAAGCAGGATGTCAATCCCTGCTTCGCCGACAACCTCG
ACCAAATCATCAAGCTCAACATCGCCTGTCCCCTCTCCCGCACGGGCCTG
ACTGGCCTCGTGAACTCAGGGATTATGTGCGGGGAGGATCGGGACGATAT
TGAGGGCGACGCCGAGCTTTGTAAGGGCAACACGCAGGGCTTCAACTCGT
GGGAGGCCATGGCTGCCCATGCCCGGTCCTTCCAAGACATCTATCACACC
TGCATCTGCCGTTACTTGGAGGTAAAAAAGGGCGTCGCCCCCCTCCGGCG
CCAGGAGAACGGTAACTGTGCGAGGGAGGCTGAGAGGGGAGGGAGGGAGA
GGGAGTATGGAGTTATGTTGATGTGA
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Synonyms
Publications