NO08G00040.1, NO08G00040.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO08G00040.1
Unique NameNO08G00040.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1389
Alignment locationchr8:10816..13128 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr8genomechr8:10816..13128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO08G00040.1 vs.
Match: EWM26490.1 (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 748.4 bits (1931), Expect = 1.300e-212
Identity = 358/456 (78.51%), Postives = 396/456 (86.84%), Query Frame = 0 
Query:    2 MLRRRSPFAIATTTLLALAVTTLLPASVAADETATSMSSAYRPRRLRSVPSRQLQDAASLPKV---ADLCVAELDWTSEGGEILVNGQPLHVKGTSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSAALALTPNKKVNANTIETELHNLTAIELIGNIIDKAAEYDILVMLDMHRLNEDFIPELWYDDKYTMKDVKQAWDNLLTAFGNRWNLFAIDLKNEPHGKATWGSGNDTTDWNTAAEDLAKYLYAKHPQYKGLVFIEGTQLATAEHHKLDTNNKWWGGDLEGVKEFPIDLGSDALNKKVVYSPHVYGPDAFVQPYFSAKNFPKNMPAIWKDQWAFVEKETDRAVVVGEWGGHYEKQDKVWQDAFAKFIMDECLEDTFYWCLNPNSGDTGGLLDYDFLTPKVEKLALLAKIQPNPTFVSAKAPGQYCITPGAYANPKCDKGRRL 455
            ML  RS  AI++  +  L +T   P+   AD+T   + +     RLR+  +RQL  A+   KV   ADLCVA LDWTSEGGEIL+NGQP H+KG SYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFS ALAL PNKKVNANTIE ELH+LTA+ELIGNIIDKAAEY IL+MLDMHRLNEDFIPELWYDDKY+M DVK+AWDNLLTAFG+RWNLFAIDLKNEPHG ATWGSG  TTDWNTAAE+LA YLY KHPQYKGLVF+EGTQLA+A+HHKLD NNKWWGGDLEGV+EFPIDLGSDALNK++VYSPHVYGPDAFVQPYF AKNFP NMP IWK QWAFVE++TDRAVVVGEWGG YE QDK+WQD+FAKF++DECLEDTFYWCLNPNSGDTGGLLDYDFLTP  +KLALLAK+QP+PTF++ K   QYCI+PGAYANPKCDKGRRL
Sbjct:    1 MLFHRSMDAISSVIVTFLLLTAS-PSFSNADDTMGGLVNMNP--RLRA--TRQLAKASGSSKVSTPADLCVASLDWTSEGGEILLNGQPFHLKGVSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEPNKKVNANTIEKELHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIPELWYDDKYSMDDVKEAWDNLLTAFGDRWNLFAIDLKNEPHGVATWGSGKATTDWNTAAEELATYLYKKHPQYKGLVFVEGTQLASAKHHKLDKNNKWWGGDLEGVQEFPIDLGSDALNKRLVYSPHVYGPDAFVQPYFEAKNFPDNMPDIWKKQWAFVEEQTDRAVVVGEWGGRYENQDKIWQDSFAKFLVDECLEDTFYWCLNPNSGDTGGLLDYDFLTPMPKKLALLAKVQPHPTFITVKGSDQYCISPGAYANPKCDKGRRL 451
The following BLAST results are available for this feature:
BLAST of NO08G00040.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26490.11.300e-21278.51cellulase 2 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO08G00040NO08G00040Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO08G00040.1NO08G00040.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO08G00040.1.cds1NO08G00040.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00040.1.cds2NO08G00040.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00040.1.cds3NO08G00040.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00040.1.cds4NO08G00040.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO08G00040.1.cds5NO08G00040.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO08G00040.1 ID=NO08G00040.1|Name=NO08G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=1389bp
ATGATGCTGCGTCGTCGCTCGCCCTTTGCAATTGCCACTACCACACTTCT
AGCCCTCGCCGTCACCACTCTACTTCCCGCATCCGTCGCTGCAGATGAGA
CTGCGACCAGCATGAGCAGTGCCTATCGTCCTCGCCGCCTCCGCTCTGTC
CCCTCCCGTCAGCTTCAGGATGCCGCCTCCTTGCCCAAGGTTGCGGACCT
TTGTGTGGCCGAGCTCGACTGGACTTCGGAGGGTGGGGAGATCTTGGTCA
ATGGACAGCCCTTGCACGTCAAGGGCACTAGCTATTTTGGTTTTGAGACG
CCCAATGAAGTGCCCCATGGCCTGTGGTCCGTAACGCGCGATCAGATCTT
CGGCTTCCTGCGAAACGAGAGCTTCAACGCGGTGCGGTTGCCCTTTTCCG
CTGCCTTGGCCCTGACCCCCAACAAAAAGGTGAACGCTAATACCATCGAA
ACGGAGCTGCACAACCTGACGGCCATCGAGCTGATTGGGAACATCATCGA
CAAGGCAGCCGAGTACGACATTCTTGTTATGCTTGATATGCACCGACTTA
ATGAGGACTTTATTCCCGAGCTCTGGTACGATGACAAGTACACGATGAAA
GACGTGAAACAGGCCTGGGACAATCTCTTGACGGCCTTTGGGAACCGGTG
GAACCTCTTTGCGATCGACTTGAAGAATGAACCGCACGGCAAGGCCACCT
GGGGCAGCGGCAACGACACTACGGACTGGAACACGGCAGCTGAGGACCTG
GCCAAGTACCTGTATGCTAAGCACCCCCAGTACAAGGGTCTGGTCTTTAT
CGAGGGTACGCAGCTGGCCACGGCCGAGCATCACAAGCTGGACACGAATA
ACAAGTGGTGGGGGGGAGACCTGGAGGGTGTGAAGGAGTTCCCGATCGAC
CTGGGCTCGGACGCCTTGAACAAGAAGGTCGTGTATTCTCCCCACGTGTA
CGGGCCTGACGCCTTTGTGCAGCCGTACTTCAGTGCCAAGAACTTCCCGA
AGAACATGCCAGCGATTTGGAAGGACCAGTGGGCTTTTGTGGAGAAGGAG
ACGGACCGCGCGGTGGTGGTGGGGGAGTGGGGGGGGCATTACGAAAAGCA
GGACAAGGTCTGGCAAGATGCTTTTGCCAAGTTTATCATGGATGAGTGCT
TGGAGGACACTTTCTACTGGTGTTTGAATCCTAACAGCGGCGATACGGGC
GGCCTCCTCGACTACGACTTCCTGACTCCCAAGGTGGAGAAGCTGGCCCT
TCTTGCCAAGATCCAGCCTAATCCTACCTTTGTCAGCGCCAAGGCCCCAG
GCCAGTACTGCATCACCCCCGGCGCGTACGCAAACCCGAAGTGCGACAAG
GGCCGTCGGCTCCAAGTCAAAGCCGCCACCACGGCCTAA
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protein sequence of NO08G00040.1

>NO08G00040.1-protein ID=NO08G00040.1-protein|Name=NO08G00040.1|organism=Nannochloropsis oceanica|type=polypeptide|length=463bp
MMLRRRSPFAIATTTLLALAVTTLLPASVAADETATSMSSAYRPRRLRSV
PSRQLQDAASLPKVADLCVAELDWTSEGGEILVNGQPLHVKGTSYFGFET
PNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSAALALTPNKKVNANTIE
TELHNLTAIELIGNIIDKAAEYDILVMLDMHRLNEDFIPELWYDDKYTMK
DVKQAWDNLLTAFGNRWNLFAIDLKNEPHGKATWGSGNDTTDWNTAAEDL
AKYLYAKHPQYKGLVFIEGTQLATAEHHKLDTNNKWWGGDLEGVKEFPID
LGSDALNKKVVYSPHVYGPDAFVQPYFSAKNFPKNMPAIWKDQWAFVEKE
TDRAVVVGEWGGHYEKQDKVWQDAFAKFIMDECLEDTFYWCLNPNSGDTG
GLLDYDFLTPKVEKLALLAKIQPNPTFVSAKAPGQYCITPGAYANPKCDK
GRRLQVKAATTA*
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mRNA from alignment at chr8:10816..13128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO08G00040.1 ID=NO08G00040.1|Name=NO08G00040.1|organism=Nannochloropsis oceanica|type=mRNA|length=2313bp|location=Sequence derived from alignment at chr8:10816..13128+ (Nannochloropsis oceanica)
ATGATGCTGCGTCGTCGCTCGCCCTTTGCAATTGCCACTACCACACTTCT
AGCCCTCGCCGTCACCACTCTACTTCCCGCATCCGTCGCTGCAGATGAGA
CTGCGACCAGCATGAGCAGTGCCTATCGTCCTCGCCGCCTCCGCTCTGTC
CCCTCCCGTCAGCTTCAGGATGCCGCCTCCTTGCCCAAGGTTGCGGACCT
TTGTGTGGCCGAGCTCGACTGGACTTCGGAGGGTGGGGAGATCTTGGTCA
ATGGACAGCCCTTGCACGTCAAGGGCACTAGCTATTTTGGTTTTGAGACG
CCCAATGAAGGTATGTTTGTCCTCAACTTAGTGTGCGTGTCCCGCCTTAT
TTTGGGTTCTCCATTTCTCTGTCGTCCACTCCTCCTCCCTCAACACTCTC
CTAAATACTTTTGTTCCCCTCCCCGCCACTGAAAGTATTCTCATAAACAA
TGTTTTTTATCGTCTCATAGTTTAATCTGTCCTATCCTATTTATCGAACA
ACTGTACTCTCTCTCCCTCCTCTCAACCCCCCTCTCTCCCTCCCCCTCCT
GCCCCCCCCTGCCCTTCAGTGCCCCATGGCCTGTGGTCCGTAACGCGCGA
TCAGATCTTCGGCTTCCTGCGAAACGAGAGCTTCAACGCGGTGCGGTTGC
CCTTTTCCGCTGCCTTGGCCCTGACCCCCAACAAAAAGGTGAACGCTAAT
ACCATCGAAACGGAGCTGCACAACCTGACGGCCATCGAGCTGATTGGGAA
CATCATCGACAAGGCAGCCGAGTACGACATTCTTGTTATGCTTGATATGC
ACCGACTTAATGAGGACTTTATTCCCGAGCTCTGGTACGATGACAAGTAC
ACGATGAAAGACGTGAAACAGGCCTGGGACAATCTCTTGACGGCCTTTGG
GAACCGGTGGAACCTCTTTGCGATCGGTAAGTCGAAGAGGAAGGTAGGAG
GGGAAGTACGAAGGAAGGTAGGAGGGGGTGGATCATCAGAAGTCCTTCGG
AACTGTTGGTATCATTGTAAACCTTTGTAGTTTTATCACTCCCTTGCACG
GGCCGCCACTCATGCACTTTCTTCACACCTTTCTTTCCTCCCCTGCTGCA
GACTTGAAGAATGAACCGCACGGCAAGGCCACCTGGGGCAGCGGCAACGA
CACTACGGACTGGAACACGGCAGCTGAGGTAAGGAGGGAACAAAAGGTGA
AGGGGCAAGAGGCAATTGATTTCTATCCATGGCTAGCCTCAACACATGTG
CGATTCACCCATATATTTTCCTTACTCCTTACATACCCACCCAACCCCAC
CTCTCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTT
TCCCCCCTCTCCCTCCCATCCACCTTTCTTCCTCTTAGGACCTGGCCAAG
TACCTGTATGCTAAGCACCCCCAGTACAAGGGTCTGGTCTTTATCGAGGG
TACGCAGCTGGCCACGGCCGAGCATCACAAGCTGGACACGAATAACAAGT
GGTGGGGGGGAGACCTGGAGGGTGTGAAGGAGTTCCCGATCGACCTGGGC
TCGGACGCCTTGAACAAGAAGGTCGTGTATTCTCCCCACGTGTACGGGCC
TGACGCCTTTGTGCAGCCGTACTTCAGTGCCAAGAACTTCCCGAAGAACA
TGCCAGCGATTTGGAAGGACCAGTGGGCTTTTGTGGAGAAGGAGACGGAC
CGCGCGGTGGTGGTGGGGGAGTGGGGGGGGCATTACGAAAAGCAGGACAA
GGTCTGGCAAGATGCTTTTGCCAAGTTTATCATGGATGAGTGCTTGGAGG
ACACTTTCTACTGGTGTTTGAATCCTAACAGGTATGGAAGGGTGAGAAGG
GAGAGAGACGGGGAGGAACAAAGGAGGGTAAAGAAGGATGAGCTGGATGA
GAAATTTTCCCCTACTCTCGCCTTTTCCCACTGAACAGGGGTGAGGCTTT
CACTCAAACCTTTCATTATCCCTTTCTCTCATGTCTGCGAGCAATCAACA
ACTCGCAGTTAGGCGCTAATTCTCACACAGTAATCGCCCACTTTCTTTTT
TTCCTCTCCCCTGCCTTCCTCTTTCGGTCCCCTTTCTTCCTACTTCCTCA
ATCTGCCATAGCGGCGATACGGGCGGCCTCCTCGACTACGACTTCCTGAC
TCCCAAGGTGGAGAAGCTGGCCCTTCTTGCCAAGATCCAGCCTAATCCTA
CCTTTGTCAGCGCCAAGGCCCCAGGCCAGTACTGCATCACCCCCGGCGCG
TACGCAAACCCGAAGTGCGACAAGGGCCGTCGGCTCCAAGTCAAAGCCGC
CACCACGGCCTAA
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Coding sequence (CDS) from alignment at chr8:10816..13128+

>NO08G00040.1 ID=NO08G00040.1|Name=NO08G00040.1|organism=Nannochloropsis oceanica|type=CDS|length=1389bp|location=Sequence derived from alignment at chr8:10816..13128+ (Nannochloropsis oceanica)
ATGATGCTGCGTCGTCGCTCGCCCTTTGCAATTGCCACTACCACACTTCT
AGCCCTCGCCGTCACCACTCTACTTCCCGCATCCGTCGCTGCAGATGAGA
CTGCGACCAGCATGAGCAGTGCCTATCGTCCTCGCCGCCTCCGCTCTGTC
CCCTCCCGTCAGCTTCAGGATGCCGCCTCCTTGCCCAAGGTTGCGGACCT
TTGTGTGGCCGAGCTCGACTGGACTTCGGAGGGTGGGGAGATCTTGGTCA
ATGGACAGCCCTTGCACGTCAAGGGCACTAGCTATTTTGGTTTTGAGACG
CCCAATGAAGTGCCCCATGGCCTGTGGTCCGTAACGCGCGATCAGATCTT
CGGCTTCCTGCGAAACGAGAGCTTCAACGCGGTGCGGTTGCCCTTTTCCG
CTGCCTTGGCCCTGACCCCCAACAAAAAGGTGAACGCTAATACCATCGAA
ACGGAGCTGCACAACCTGACGGCCATCGAGCTGATTGGGAACATCATCGA
CAAGGCAGCCGAGTACGACATTCTTGTTATGCTTGATATGCACCGACTTA
ATGAGGACTTTATTCCCGAGCTCTGGTACGATGACAAGTACACGATGAAA
GACGTGAAACAGGCCTGGGACAATCTCTTGACGGCCTTTGGGAACCGGTG
GAACCTCTTTGCGATCGACTTGAAGAATGAACCGCACGGCAAGGCCACCT
GGGGCAGCGGCAACGACACTACGGACTGGAACACGGCAGCTGAGGACCTG
GCCAAGTACCTGTATGCTAAGCACCCCCAGTACAAGGGTCTGGTCTTTAT
CGAGGGTACGCAGCTGGCCACGGCCGAGCATCACAAGCTGGACACGAATA
ACAAGTGGTGGGGGGGAGACCTGGAGGGTGTGAAGGAGTTCCCGATCGAC
CTGGGCTCGGACGCCTTGAACAAGAAGGTCGTGTATTCTCCCCACGTGTA
CGGGCCTGACGCCTTTGTGCAGCCGTACTTCAGTGCCAAGAACTTCCCGA
AGAACATGCCAGCGATTTGGAAGGACCAGTGGGCTTTTGTGGAGAAGGAG
ACGGACCGCGCGGTGGTGGTGGGGGAGTGGGGGGGGCATTACGAAAAGCA
GGACAAGGTCTGGCAAGATGCTTTTGCCAAGTTTATCATGGATGAGTGCT
TGGAGGACACTTTCTACTGGTGTTTGAATCCTAACAGCGGCGATACGGGC
GGCCTCCTCGACTACGACTTCCTGACTCCCAAGGTGGAGAAGCTGGCCCT
TCTTGCCAAGATCCAGCCTAATCCTACCTTTGTCAGCGCCAAGGCCCCAG
GCCAGTACTGCATCACCCCCGGCGCGTACGCAAACCCGAAGTGCGACAAG
GGCCGTCGGCTCCAAGTCAAAGCCGCCACCACGGCCTAA
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Synonyms
Publications