NO07G04700.1, NO07G04700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04700.1
Unique NameNO07G04700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2210
Alignment locationchr7:1325650..1327933 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1325650..1327933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04700.1 vs.
Match: XP_009844424.1 (hypothetical protein H257_17354 [Aphanomyces astaci]; ETV66095.1 hypothetical protein H257_17354 [Aphanomyces astaci])

HSP 1 Score: 85.1 bits (209), Expect = 5.400e-13
Identity = 83/365 (22.74%), Postives = 156/365 (42.74%), Query Frame = 0 
Query:   56 RGVVLCAYDAKSLRLAWIQISTLRTLYGMVNESFI-IYHAD-ELRETIGAKLWRKQLKAIPGVQIQSLETWYQGTYASEFGTAPLQNFQGFFCKPAALLAAPFENVLMLDLDVIITDNPFVLMNTPDYSKQGAYLFADRRTQRPAKYMRSYR----QQLRNIS--------RHFNSPRNQTPFLEKLPPMTRWSYDYGESAVVLFNK-TLNRDAMLVLEKILAPDLFNSTTKYIYGDKELYWQALVFAGVNVSLNPLIPSEVGTPNRNDEVTVTCTSHYVFAQWLWQPYATPKIFYVNGDGIEEMLMGRDQTILNCTLSDPLEYYSSLTQYNTFCNRGANPL--PQNLI--DTIWAYKIMYSKSS 402
            RG+++C +DA     A    S +  L  + N   I +YH + EL       L+    +      ++ ++       +     A   +F+ F+ KP AL+      V++LD D ++  +P  L  TP Y + G   F DR   + A+Y+ ++     Q++ N+           F+  +  + +LE+     + S    +S++V+ NK   +  AM VL  ++    +  T  + YGDKEL+W A   A V  S +P   +   +P   ++   T       AQW+    A   + ++NG  I    +  D + L    +   E  +++  + +   + + PL  P++    D  W  + +Y + S
Sbjct:   74 RGILVCVFDAMIPMAA----SLVLELRALGNTDLIQMYHCNGELSAASHRILYMLDAR------LEIVDVCKDFVASGRLPAAKANDFRSFWLKPLALVHTRLAEVILLDADDLMFHDPSQLWQTPGYKETGTVFFYDREVAK-AEYLNNWSVHRFQRMLNLHVLVDTFEYAQFHLMKRPSKYLERTLAWNKHSAHEQDSSIVVVNKGATSSVAMDVLYHLVMHTRY--TLDFSYGDKELFWLAFELAQVPYSFSPWANTAAASPGNMEKHPDTICGG--LAQWMPLAEAKSVLLHINGGYIFNPYVNHDMSSLQDPAARVAELVAAIPTHVSRQRKRSKPLTTPEDAANPDGFWPQECLYKRGS 423
The following BLAST results are available for this feature:
BLAST of NO07G04700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_009844424.15.400e-1322.74hypothetical protein H257_17354 [Aphanomyces astac... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04700NO07G04700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04700.1NO07G04700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04700.1.cds1NO07G04700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04700.1.cds2NO07G04700.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04700.1 ID=NO07G04700.1|Name=NO07G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2210bp
TGCTGGTGTCTCGTTCGTGAACTCCTGTGTGAAATTAAACTTTAACAATC
TCCTTATTTCCTTGTGGGTTTGACTTCGCTATCGCCCAGACAGAAGTCCA
GTCGCTTTGCCATAAACGTTTTTTTTTTTAAAAAAAACCCAAAGTATAGT
AAGTCTGGTATCCCCACACGTCGGAAGACTACCGGTATTATATAGATAGG
TAAATCGTTGGTCATCTTGTCCTTCCATTATGCGCGACAAAATGTCATTG
TAATCGTACTCAATGGGAATCACGCACGACAACTAGTCGCCATAGTCGTC
CTCGGTGGGAACCATGCACGACTACGAAAGTCATCTTAGTGATAAGATCA
CAAAGGATGACATACAGTAGCCGGACAAAAATCTATTAATACTATAGATA
AGCTTGAACCCCTTTGCCATCGTTCATACACTTATTACATTTTATATTAT
CGCTTTCTGTGATAAAAATTCCCAAAATGAATACTATACCACGACAATTG
CCTGCTTTTACTGTCCATATCCTTCTTCTTGGGTTTTCACGATAACCATA
CACGTGCTGCTCACCACTGTACATACCAGGACACATATTTCATGAAAGTG
CATACAATACCCCGGCGCGCCTATCATATGGCAGGAGTGATCGTTGGGTG
TTGTTGGTTCACTGTCGGATTGAAGTTGTTCATGAATACCCTGACTGTCA
CGTCTCCTTCTGCAAGACCTGTCATCATGGCGGCCGAAGTCAAGGATAAA
GCCAATCGAGGGGTCGTTCTGTGTGCGTACGATGCCAAATCGCTTCGCCT
TGCATGGATACAGATATCAACGCTGCGTACCCTATATGGTATGGTGAACG
AGTCCTTCATTATATACCATGCAGATGAGCTTCGAGAAACGATTGGTGCC
AAACTATGGCGGAAACAATTGAAAGCCATCCCCGGGGTGCAGATACAGAG
CTTGGAAACTTGGTACCAGGGGACGTACGCATCTGAATTCGGGACTGCAC
CATTACAAAACTTTCAAGGCTTTTTTTGTAAACCAGCAGCGCTACTAGCC
GCACCATTCGAGAATGTTTTGATGTTGGATCTAGATGTCATAATCACGGA
CAACCCCTTTGTGCTCATGAACACCCCTGATTATTCAAAACAAGGTGCAT
ACTTATTTGCAGATCGTCGGACCCAGCGACCGGCTAAATATATGAGGAGT
TACCGACAACAACTACGCAATATTTCGAGGCATTTCAATTCGCCTAGAAA
TCAAACACCCTTTTTAGAGAAGTTGCCTCCTATGACGAGGTGGAGCTACG
ATTATGGAGAAAGTGCCGTTGTCTTATTCAACAAGACATTGAACAGAGAT
GCAATGTTGGTACTGGAGAAGATTTTGGCACCAGACCTATTTAACAGCAC
TACCAAGTATATATATGGAGACAAAGAATTATACTGGCAGGCTCTCGTAT
TTGCAGGCGTCAATGTTTCTCTGAATCCTTTAATACCTTCAGAAGTGGGA
ACTCCAAACAGAAATGATGAAGTTACCGTGACGTGTACATCTCACTACGT
CTTTGCCCAGTGGCTGTGGCAGCCCTATGCAACACCTAAGATATTTTATG
TCAACGGAGATGGAATCGAAGAAATGCTGATGGGAAGGGATCAGACCATC
TTGAACTGTACACTCTCAGACCCACTCGAGTATTACTCTTCACTAACTCA
GTATAATACCTTTTGCAACCGTGGTGCAAATCCGTTACCACAAAATCTCA
TCGACACGATCTGGGCATATAAAATTATGTACAGCAAGTCGTCATCGAAA
CATCTTAAAGTGTAAATAGAATCACTACAGGTAAGGTTAGGTTTGGCTGA
TTTATCAGGATAACGACGATTCTAGCATCATCGTGAACATCACCGCGGAG
CACTCTACCTTTGCAATCAAATTATAAGAGAGGAATTTAAATGCTGGCCG
AGACTGCTCCTAAACATTTTTCTATATGTAGGAGGCGTGGAACTTGGACC
AAGTTCCTCCGTTCCGATCCTTCCACAACGCGACAAAGTCAACCAAATAG
CCAAAGCTCCTTCGAAGGAAAGCAATGTTTTCTTCTTTCTACGGTATTTA
TGCCTCGTTCTTTGAGATCATCTTTGGTGTCTTCCTGGCCTCATCCGACC
TTCTGGTTTCTCCTGTTTCTCCGACCCACGGACTATACAGAAAGTTGTGT
TAGTTTTTTG
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protein sequence of NO07G04700.1

>NO07G04700.1-protein ID=NO07G04700.1-protein|Name=NO07G04700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MKVHTIPRRAYHMAGVIVGCCWFTVGLKLFMNTLTVTSPSARPVIMAAEV
KDKANRGVVLCAYDAKSLRLAWIQISTLRTLYGMVNESFIIYHADELRET
IGAKLWRKQLKAIPGVQIQSLETWYQGTYASEFGTAPLQNFQGFFCKPAA
LLAAPFENVLMLDLDVIITDNPFVLMNTPDYSKQGAYLFADRRTQRPAKY
MRSYRQQLRNISRHFNSPRNQTPFLEKLPPMTRWSYDYGESAVVLFNKTL
NRDAMLVLEKILAPDLFNSTTKYIYGDKELYWQALVFAGVNVSLNPLIPS
EVGTPNRNDEVTVTCTSHYVFAQWLWQPYATPKIFYVNGDGIEEMLMGRD
QTILNCTLSDPLEYYSSLTQYNTFCNRGANPLPQNLIDTIWAYKIMYSKS
SSKHLKV*
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mRNA from alignment at chr7:1325650..1327933+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04700.1 ID=NO07G04700.1|Name=NO07G04700.1|organism=Nannochloropsis oceanica|type=mRNA|length=2284bp|location=Sequence derived from alignment at chr7:1325650..1327933+ (Nannochloropsis oceanica)
TGCTGGTGTCTCGTTCGTGAACTCCTGTGTGAAATTAAACTTTAACAATC
TCCTTATTTCCTTGTGGGTTTGACTTCGCTATCGCCCAGACAGAAGTCCA
GTCGCTTTGCCATAAACGTTTTTTTTTTTAAAAAAAACCCAAAGTATAGT
AAGTCTGGTATCCCCACACGTCGGAAGACTACCGGTATTATATAGATAGG
TAAATCGTTGGTCATCTTGTCCTTCCATTATGCGCGACAAAATGTCATTG
TAATCGTACTCAATGGGAATCACGCACGACAACTAGTCGCCATAGTCGTC
CTCGGTGGGAACCATGCACGACTACGAAAGTCATCTTAGTGATAAGATCA
CAAAGGATGACATACAGTAGCCGGACAAAAATCTATTAATACTATAGATA
AGCTTGAACCCCTTTGCCATCGTTCATACACTTATTACATTTTATATTAT
CGCTTTCTGTGATAAAAATTCCCAAAATGAATACTATACCACGACAATTG
CCTGCTTTTACTGTCCATATCCTTCTTCTTGGGTTTTCACGATAACCATA
CACGTGCTGCTCACCACTGTACATACCAGGACACATATTTCATGAAAGTG
CATACAATACCCCGGCGCGCCTATCATATGGCAGGAGTGATCGTTGGGTG
TTGTTGGTTCACTGTCGGATTGAAGTTGTTCATGAATACCCTGACTGTCA
CGTCTCCTTCTGCAAGACCTGTCATCATGGCGGCCGAAGTCAAGGATAAA
GCCAATCGAGGGGTCGTTCTGTGTGCGTACGATGCCAAATCGCTTCGCCT
TGCATGGATACAGGTGAGGAAAAATCTGTGCTTCTTCACTTGCCCTTTCT
TGCGAGCTCATAATCTATCCCTTTCTTCCAACCGGAGATATCAACGCTGC
GTACCCTATATGGTATGGTGAACGAGTCCTTCATTATATACCATGCAGAT
GAGCTTCGAGAAACGATTGGTGCCAAACTATGGCGGAAACAATTGAAAGC
CATCCCCGGGGTGCAGATACAGAGCTTGGAAACTTGGTACCAGGGGACGT
ACGCATCTGAATTCGGGACTGCACCATTACAAAACTTTCAAGGCTTTTTT
TGTAAACCAGCAGCGCTACTAGCCGCACCATTCGAGAATGTTTTGATGTT
GGATCTAGATGTCATAATCACGGACAACCCCTTTGTGCTCATGAACACCC
CTGATTATTCAAAACAAGGTGCATACTTATTTGCAGATCGTCGGACCCAG
CGACCGGCTAAATATATGAGGAGTTACCGACAACAACTACGCAATATTTC
GAGGCATTTCAATTCGCCTAGAAATCAAACACCCTTTTTAGAGAAGTTGC
CTCCTATGACGAGGTGGAGCTACGATTATGGAGAAAGTGCCGTTGTCTTA
TTCAACAAGACATTGAACAGAGATGCAATGTTGGTACTGGAGAAGATTTT
GGCACCAGACCTATTTAACAGCACTACCAAGTATATATATGGAGACAAAG
AATTATACTGGCAGGCTCTCGTATTTGCAGGCGTCAATGTTTCTCTGAAT
CCTTTAATACCTTCAGAAGTGGGAACTCCAAACAGAAATGATGAAGTTAC
CGTGACGTGTACATCTCACTACGTCTTTGCCCAGTGGCTGTGGCAGCCCT
ATGCAACACCTAAGATATTTTATGTCAACGGAGATGGAATCGAAGAAATG
CTGATGGGAAGGGATCAGACCATCTTGAACTGTACACTCTCAGACCCACT
CGAGTATTACTCTTCACTAACTCAGTATAATACCTTTTGCAACCGTGGTG
CAAATCCGTTACCACAAAATCTCATCGACACGATCTGGGCATATAAAATT
ATGTACAGCAAGTCGTCATCGAAACATCTTAAAGTGTAAATAGAATCACT
ACAGGTAAGGTTAGGTTTGGCTGATTTATCAGGATAACGACGATTCTAGC
ATCATCGTGAACATCACCGCGGAGCACTCTACCTTTGCAATCAAATTATA
AGAGAGGAATTTAAATGCTGGCCGAGACTGCTCCTAAACATTTTTCTATA
TGTAGGAGGCGTGGAACTTGGACCAAGTTCCTCCGTTCCGATCCTTCCAC
AACGCGACAAAGTCAACCAAATAGCCAAAGCTCCTTCGAAGGAAAGCAAT
GTTTTCTTCTTTCTACGGTATTTATGCCTCGTTCTTTGAGATCATCTTTG
GTGTCTTCCTGGCCTCATCCGACCTTCTGGTTTCTCCTGTTTCTCCGACC
CACGGACTATACAGAAAGTTGTGTTAGTTTTTTG
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Coding sequence (CDS) from alignment at chr7:1325650..1327933+

>NO07G04700.1 ID=NO07G04700.1|Name=NO07G04700.1|organism=Nannochloropsis oceanica|type=CDS|length=1224bp|location=Sequence derived from alignment at chr7:1325650..1327933+ (Nannochloropsis oceanica)
ATGAAAGTGCATACAATACCCCGGCGCGCCTATCATATGGCAGGAGTGAT
CGTTGGGTGTTGTTGGTTCACTGTCGGATTGAAGTTGTTCATGAATACCC
TGACTGTCACGTCTCCTTCTGCAAGACCTGTCATCATGGCGGCCGAAGTC
AAGGATAAAGCCAATCGAGGGGTCGTTCTGTGTGCGTACGATGCCAAATC
GCTTCGCCTTGCATGGATACAGATATCAACGCTGCGTACCCTATATGGTA
TGGTGAACGAGTCCTTCATTATATACCATGCAGATGAGCTTCGAGAAACG
ATTGGTGCCAAACTATGGCGGAAACAATTGAAAGCCATCCCCGGGGTGCA
GATACAGAGCTTGGAAACTTGGTACCAGGGGACGTACGCATCTGAATTCG
GGACTGCACCATTACAAAACTTTCAAGGCTTTTTTTGTAAACCAGCAGCG
CTACTAGCCGCACCATTCGAGAATGTTTTGATGTTGGATCTAGATGTCAT
AATCACGGACAACCCCTTTGTGCTCATGAACACCCCTGATTATTCAAAAC
AAGGTGCATACTTATTTGCAGATCGTCGGACCCAGCGACCGGCTAAATAT
ATGAGGAGTTACCGACAACAACTACGCAATATTTCGAGGCATTTCAATTC
GCCTAGAAATCAAACACCCTTTTTAGAGAAGTTGCCTCCTATGACGAGGT
GGAGCTACGATTATGGAGAAAGTGCCGTTGTCTTATTCAACAAGACATTG
AACAGAGATGCAATGTTGGTACTGGAGAAGATTTTGGCACCAGACCTATT
TAACAGCACTACCAAGTATATATATGGAGACAAAGAATTATACTGGCAGG
CTCTCGTATTTGCAGGCGTCAATGTTTCTCTGAATCCTTTAATACCTTCA
GAAGTGGGAACTCCAAACAGAAATGATGAAGTTACCGTGACGTGTACATC
TCACTACGTCTTTGCCCAGTGGCTGTGGCAGCCCTATGCAACACCTAAGA
TATTTTATGTCAACGGAGATGGAATCGAAGAAATGCTGATGGGAAGGGAT
CAGACCATCTTGAACTGTACACTCTCAGACCCACTCGAGTATTACTCTTC
ACTAACTCAGTATAATACCTTTTGCAACCGTGGTGCAAATCCGTTACCAC
AAAATCTCATCGACACGATCTGGGCATATAAAATTATGTACAGCAAGTCG
TCATCGAAACATCTTAAAGTGTAA
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Synonyms
Publications