NO07G04660.1, NO07G04660.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04660.1
Unique NameNO07G04660.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1674
Alignment locationchr7:1314980..1316828 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1314980..1316828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G04660.1 vs.
Match: XP_005855423.1 (na+-dependent inorganic phosphate cotransporter [Nannochloropsis gaditana CCMP526]; EKU20930.1 na+-dependent inorganic phosphate cotransporter [Nannochloropsis gaditana CCMP526]; EWM26916.1 sodium-dependent phosphate transport protein [Nannochloropsis gaditana])

HSP 1 Score: 605.9 bits (1561), Expect = 1.300e-169
Identity = 339/527 (64.33%), Postives = 401/527 (76.09%), Query Frame = 0
Query:   21 VTGFTLPFTCLRSSYFVPKNLSPYNSPLLRPSC--------SSLSPPRRLLASSRPPPALSPLHSSPPPWPFLLLSSAAILISYADRANLATCILPMAQELDWPLSAQGLVLSSFFVGYGLTGLLGGYLADRYGGSRVLQAGIFLWSTFTLLMPSFAQAGIITAVLARFFLGLGEGVAFPAIHAMIPLRVPPDSRSLAVSLITAASFLGAVFAFALSPLLIETAGWPSVFYFFGALPLLWFPLWWLYGGGETAKEDADGGLGAADGKGEERTVGRKVKENDTLQKVYLPDALVPYPPATSSTYPSSLPPSSSSGLSWSEAKYLLGRKEVQAILVAQYTQSWGIYGLLSWLPSYYNKTFNVDVSNLAAFTLAPYLLQALVGVSSGYLADSLIAAGWRVKRVRQLLQSAGTLLPALFLLLATSTYTTTAASSSPSLAFSFLYVTVGAGFSAFTLSGVSCSHLDVCPRHAGVVFAAGNTLATIGGLFSVPVASLLLEKTGNFDAVFALFAAHYLVGAVVYTAWIGEEDVL 540
            VT F L    LR     P   S  + PLL+ S         S    P  L  S  PPP  S    S  PW FL+LSS AILISYADRANLATCILPMAQ+LDW LS+QG+VLS+FF GY LTGLLGGYLADR+GGSRVLQAGI LWS  T L P+FA+AG+   V+ R  LG+GEGVAFPAIHAMIP RVP  SRSLAVSLIT AS+LGAV AFALSPLLIE AGWPSVFYFFGALP+LWFP+WW +  GE   E  +G    A+ + + R        N +  K    D +    P+T+++  SS PP    GL+W++A++LL RKEV AILVAQYTQ+WGIYGLLSWLPSYY+KTF++DV+ LAAFTLAPYL+Q LVG++SGYLAD+LIAAGW +KRVRQLLQ+AGT+LPALFLLLAT+T+ T++ S+S SL FSF YVT+GAG SAFTL GVSCSHLD+CPR+AG++FAAGNTLAT+GGL SVP+A L+LEK G+FDAVFALFAAHY+VGA +Y AWIG+ED+L
Sbjct:   29 VTSFRLQQPWLR-----PPLSSTVSDPLLKSSIGYEQHHDLSFTRHPMPLYDSRNPPPVQSQT-GSRTPWLFLVLSSTAILISYADRANLATCILPMAQDLDWSLSSQGVVLSAFFAGYALTGLLGGYLADRFGGSRVLQAGIILWSVCTFLTPAFAKAGLGAMVMDRVLLGMGEGVAFPAIHAMIPQRVPAPSRSLAVSLITGASYLGAVLAFALSPLLIEEAGWPSVFYFFGALPVLWFPVWWAW--GEERSEAMEG--KEAESEEKARCGEGYPLSNPSSSKSQRIDLMPSSAPSTAASTTSSAPP---EGLTWAQARFLLARKEVWAILVAQYTQAWGIYGLLSWLPSYYSKTFDIDVTQLAAFTLAPYLVQTLVGIASGYLADNLIAAGWSIKRVRQLLQTAGTVLPALFLLLATTTHNTSSDSAS-SLLFSFFYVTIGAGLSAFTLGGVSCSHLDICPRNAGLIFAAGNTLATVGGLVSVPIAGLVLEKCGSFDAVFALFAAHYVVGAALYAAWIGDEDIL 541          
The following BLAST results are available for this feature:
BLAST of NO07G04660.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855423.11.300e-16964.33na+-dependent inorganic phosphate cotransporter [N... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04660NO07G04660Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04660.1NO07G04660.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04660.1.cds1NO07G04660.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04660.1.cds2NO07G04660.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04660.1 ID=NO07G04660.1|Name=NO07G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1674bp
ATGTCCCTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGC
CATGACTGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTT
CCTACTTCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGT
CCTTCCTGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCG
CCCACCTCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCT
TCCTGCTCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCC
AACCTCGCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCT
CTCAGCCCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCA
CGGGCCTGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTC
CTGCAAGCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTC
TTTCGCCCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGG
GCCTGGGTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTC
CGTGTGCCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGC
AAGCTTCTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCG
AGACGGCGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTG
CTCTGGTTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGA
AGACGCGGACGGAGGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGA
CGGTAGGACGAAAGGTAAAAGAGAATGACACGCTCCAAAAGGTCTACCTG
CCCGATGCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTC
TTCTCTCCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGT
ATCTGCTGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACG
CAGTCGTGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAA
CAAGACCTTCAACGTCGACGTTTCAAACCTCGCCGCCTTCACACTCGCAC
CCTACCTCCTCCAGGCCCTGGTCGGTGTCTCTTCGGGCTACCTGGCCGAC
AGCCTTATAGCCGCTGGGTGGCGCGTCAAGCGTGTGCGGCAGCTGCTCCA
GTCGGCTGGCACCCTGCTCCCCGCCCTATTCCTCCTCCTTGCTACCTCTA
CCTACACCACCACCGCTGCGTCCTCCTCCCCCTCCCTTGCTTTCTCCTTC
CTCTATGTCACCGTAGGTGCGGGTTTCTCGGCCTTTACCCTTTCCGGAGT
GTCATGCTCCCATCTGGACGTCTGCCCCCGCCATGCCGGCGTCGTCTTCG
CTGCGGGCAACACGCTCGCCACGATCGGTGGGCTTTTCTCTGTGCCTGTG
GCGAGTCTGCTGCTGGAAAAAACGGGAAATTTCGATGCGGTCTTTGCCTT
GTTCGCAGCCCACTATCTGGTGGGGGCAGTCGTGTACACCGCCTGGATTG
GGGAGGAGGATGTCTTGCTGGGGTGGGAGGGAGAGAGGGAAAGTGAAGAG
GGGAAGAATGAGGGGGAGGAATAG
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protein sequence of NO07G04660.1

>NO07G04660.1-protein ID=NO07G04660.1-protein|Name=NO07G04660.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSLARVNLLQVVLVVTAMTAVTGFTLPFTCLRSSYFVPKNLSPYNSPLLR
PSCSSLSPPRRLLASSRPPPALSPLHSSPPPWPFLLLSSAAILISYADRA
NLATCILPMAQELDWPLSAQGLVLSSFFVGYGLTGLLGGYLADRYGGSRV
LQAGIFLWSTFTLLMPSFAQAGIITAVLARFFLGLGEGVAFPAIHAMIPL
RVPPDSRSLAVSLITAASFLGAVFAFALSPLLIETAGWPSVFYFFGALPL
LWFPLWWLYGGGETAKEDADGGLGAADGKGEERTVGRKVKENDTLQKVYL
PDALVPYPPATSSTYPSSLPPSSSSGLSWSEAKYLLGRKEVQAILVAQYT
QSWGIYGLLSWLPSYYNKTFNVDVSNLAAFTLAPYLLQALVGVSSGYLAD
SLIAAGWRVKRVRQLLQSAGTLLPALFLLLATSTYTTTAASSSPSLAFSF
LYVTVGAGFSAFTLSGVSCSHLDVCPRHAGVVFAAGNTLATIGGLFSVPV
ASLLLEKTGNFDAVFALFAAHYLVGAVVYTAWIGEEDVLLGWEGERESEE
GKNEGEE*
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mRNA from alignment at chr7:1314980..1316828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04660.1 ID=NO07G04660.1|Name=NO07G04660.1|organism=Nannochloropsis oceanica|type=mRNA|length=1849bp|location=Sequence derived from alignment at chr7:1314980..1316828- (Nannochloropsis oceanica)
ATGTCCCTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGC CATGACTGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTT CCTACTTCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGT CCTTCCTGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCG CCCACCTCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCT TCCTGCTCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCC AACCTCGCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCT CTCAGCCCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCA CGGGCCTGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTC CTGCAAGCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTC TTTCGCCCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGG GCCTGGGTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTC CGTGTGCCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGC AAGCTTCTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCG AGACGGCGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTG CTCTGGTTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGA AGACGCGGACGGAGGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGA CGGTAGGACGAAAGGTAAAAGAGAATGACACGCTCCAAAAGGTCTACCTG CCCGATGCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTC TTCTCTCCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGT ATCTGCTGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACG CAGTCGTGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAA CAAGGTGGGTTGGACGGGGGATAGAGTGGCAGGGCGGGCTTTCGCTCTCC TTTCCGTTGCTTTCCTTACAAATAAGACGAGTCATGATTACATGATTTGG TTGATTATCTTAACGTCTAGCCAAACATTCTTGAAATACACCAACTGAGT CACTCCTTTCCCCCCCTCCCTCCCCGCAGACCTTCAACGTCGACGTTTCA AACCTCGCCGCCTTCACACTCGCACCCTACCTCCTCCAGGCCCTGGTCGG TGTCTCTTCGGGCTACCTGGCCGACAGCCTTATAGCCGCTGGGTGGCGCG TCAAGCGTGTGCGGCAGCTGCTCCAGTCGGCTGGCACCCTGCTCCCCGCC CTATTCCTCCTCCTTGCTACCTCTACCTACACCACCACCGCTGCGTCCTC CTCCCCCTCCCTTGCTTTCTCCTTCCTCTATGTCACCGTAGGTGCGGGTT TCTCGGCCTTTACCCTTTCCGGAGTGTCATGCTCCCATCTGGACGTCTGC CCCCGCCATGCCGGCGTCGTCTTCGCTGCGGGCAACACGCTCGCCACGAT CGGTGGGCTTTTCTCTGTGCCTGTGGCGAGTCTGCTGCTGGAAAAAACGG GAAATTTCGATGCGGTCTTTGCCTTGTTCGCAGCCCACTATCTGGTGGGG GCAGTCGTGTACACCGCCTGGATTGGGGAGGAGGATGTCTTGCTGGGGTG GGAGGGAGAGAGGGAAAGTGAAGAGGGGAAGAATGAGGGGGAGGAATAG
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Coding sequence (CDS) from alignment at chr7:1314980..1316828-

>NO07G04660.1 ID=NO07G04660.1|Name=NO07G04660.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr7:1314980..1316828- (Nannochloropsis oceanica)
ATGTCCCTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGC
CATGACTGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTT
CCTACTTCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGT
CCTTCCTGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCG
CCCACCTCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCT
TCCTGCTCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCC
AACCTCGCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCT
CTCAGCCCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCA
CGGGCCTGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTC
CTGCAAGCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTC
TTTCGCCCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGG
GCCTGGGTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTC
CGTGTGCCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGC
AAGCTTCTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCG
AGACGGCGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTG
CTCTGGTTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGA
AGACGCGGACGGAGGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGA
CGGTAGGACGAAAGGTAAAAGAGAATGACACGCTCCAAAAGGTCTACCTG
CCCGATGCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTC
TTCTCTCCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGT
ATCTGCTGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACG
CAGTCGTGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAA
CAAGACCTTCAACGTCGACGTTTCAAACCTCGCCGCCTTCACACTCGCAC
CCTACCTCCTCCAGGCCCTGGTCGGTGTCTCTTCGGGCTACCTGGCCGAC
AGCCTTATAGCCGCTGGGTGGCGCGTCAAGCGTGTGCGGCAGCTGCTCCA
GTCGGCTGGCACCCTGCTCCCCGCCCTATTCCTCCTCCTTGCTACCTCTA
CCTACACCACCACCGCTGCGTCCTCCTCCCCCTCCCTTGCTTTCTCCTTC
CTCTATGTCACCGTAGGTGCGGGTTTCTCGGCCTTTACCCTTTCCGGAGT
GTCATGCTCCCATCTGGACGTCTGCCCCCGCCATGCCGGCGTCGTCTTCG
CTGCGGGCAACACGCTCGCCACGATCGGTGGGCTTTTCTCTGTGCCTGTG
GCGAGTCTGCTGCTGGAAAAAACGGGAAATTTCGATGCGGTCTTTGCCTT
GTTCGCAGCCCACTATCTGGTGGGGGCAGTCGTGTACACCGCCTGGATTG
GGGAGGAGGATGTCTTGCTGGGGTGGGAGGGAGAGAGGGAAAGTGAAGAG
GGGAAGAATGAGGGGGAGGAATAG
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Synonyms
Publications