NO07G04620.2, NO07G04620.2 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G04620.2
Unique Name	NO07G04620.2
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3003
Alignment location	chr7:1302238..1305370 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1302238..1305370 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO07G04620.2 vs.
Match: EWM26914.1 (cyclin b2 [Nannochloropsis gaditana])

HSP 1 Score: 80.1 bits (196), Expect = 2.400e-11
Identity = 44/78 (56.41%), Postives = 48/78 (61.54%), Query Frame = 0

Query:  466 PTPGFYHHWNLRAAEALHRPRPYISKQRHLNAKMRAILLDWVTDGIERGREGGKEGDALSFNSIVLLKSRLCLSPFLS 544
            P  GFY HWNLRAAE+L   RPYISK RHLNAKMRAILLDWVTD             +LSF    L ++   L  FLS
Sbjct:  354 PFKGFYFHWNLRAAESLQSLRPYISKLRHLNAKMRAILLDWVTD----------VHQSLSFAPATLYRTAQVLDQFLS 421

The following BLAST results are available for this feature:

BLAST of NO07G04620.2 vs.

BLAST of NO07G04620.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26914.1	2.400e-11	56.41	cyclin b2 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G04620	NO07G04620	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04620.2	NO07G04620.2-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04620.2.cds1	NO07G04620.2.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1302238..1305370-
coding sequence from alignment at chr7:1302238..1305370-

mRNA sequence

>NO07G04620.2 ID=NO07G04620.2|Name=NO07G04620.2|organism=Nannochloropsis oceanica|type=mRNA|length=3003bp
ATGTACAGCATGACTAAAGATAGAGGGGGCGGAGGCGGGGGCGTGGGAGT
CACGTCAAAGCGCAACACTCGCAGCTCCAGCAATCCAAGTGCCACTGCGG
CAGGTGCTCATCAACATGCCGTCGGCCTCTCCAACACAAGGACCACCACA
ACCACGACCACAAGAGGTATGACGCGGCAGCGTCAGCACCAGCACAAGGA
GCATGTGCCGCCACAATTGCTAGTGCAGCCGCCCCTCTGGCAACATCCCA
AAATCATCAACACGAGCAGCAGCACCAGCAGCAGCACTAGCACCAGCAGA
AGCAGCAGCAGTAGTAGCAGTGGCGGTAATGGCGGCGGCAGTCATCCCCC
CTCCCTCATCCTATTGCAGGCGCAATGCCTGCAAGTGGCCCTCCAAGGAA
TTTCGCACACCGGTTCCCCCACTTCGTCCTCCGTCTCCCCTTTCCTCAGC
GGACAGGAACGTGACGCTCTCCGCCGTCTTGCTGTCTACCTACTCAGCTT
GACGGTGCCCAAAGAGGGCAGCAAGGATGGAGAGGAACAAGTAGAGCAAC
AGCAGACGATTAAAGGTGGAGAGCCATCACTTATGGAGGTGGTGGTAGCG
GATGGCGAGGAGGTGATGGGAGATGAAGCGCAGATGCCAGGCAACGTGGG
CCCCAGGCGGCAGCCACTTCAGCACGCCCGAGCTCCCGAAAGACAGGAAG
AGAAAGGAAGCGATTGCAGCATTACATATAGTGGCGATAGAGGCCGTAAC
AGGAAGGGCAGAGTCAAGGGCAAGGAGCGGTTGCACGCACAGCCAGCATT
ACAGCAAGCAGCCACTCTTTCGTTCGAGGCTGCCGCCTTCTCTTCTTCCT
TCCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCATCCTCCTCCTCTTCTTCCTCCTCATCCTCCTCTAGTGCCACACG
CCTGAAGAGGCCAAGCATTCGCACCACTTCCACTCCTACTTCCGAAGGAT
GGCTGATCGGCCCCTCCTTTTCCTCTTCGCCTGTCTCCCCTCCCCGCGCC
TTGCGGCGTCCCCGCCTGACCAAAGGCAACCAGTCCTCGTGCTCTTTCGC
CACAACAGTGTCCACCAAGCAAGAAAAAAAGGACGGACTGCAGGCTTTGC
CCGAGTCGGTATGGCAGCACGCCTTGTCCTTCGTCCCAGCTAAGAACCTG
TATGCCGTCATGCGCACCTCCAGGTCCTTCTTCACCATGACATCGCCCTT
CGAAGGTATCGCCGCTACCACGGGCTTGCTTTCAATCACCCTCCCTTTCT
CTTCTCTCTGTCCGCTCTTCCCCATAGCTGAAATTCCACCTCTTCCCGAG
CCGTGGTTTGACGTTCACTATTTCCTATCCCCTCCGTCCCTCCGCCCCAC
CCCAGGTTTTTACCACCACTGGAATCTTCGCGCCGCGGAGGCGCTCCACC
GTCCTAGACCCTACATCAGCAAGCAAAGACACTTGAATGCCAAAATGCGA
GCTATTCTATTGGACTGGGTCACAGACGGTATAGAGAGAGGGAGGGAAGG
AGGGAAGGAGGGTGATGCGCTTTCCTTCAACTCGATTGTTTTACTCAAGT
CACGTTTATGTCTCTCGCCCTTTCTCTCCCTCGCTGCCTCCTAGTGCATC
AGTCCCTGTCCTTCCTGCCGGCCACTTTGCACAGGACCGCGTACGTGCTT
GATCATTTCTTGAGCCGCACCGACAATGTGACGCGGGAGAAGCTGCAGCT
GGTGGGTGTCACGGCCTTCATGATAGCGGCGAAAGGGATCGAGGCATCTC
CGCCCGAGCACGACGACTGCGCGTACTGGACCGACAACGCCTACAGCGGG
GAGGAGGTTAGCCAGATGGAGATTCGGATGCTCAAGGCTCTGCCTCCGTC
CGCTCGCCCGCCCTCCCTCCCTCCCACCGCCCTGGACTTCTTGTCACTGT
ACCTGAAGGAGGCAAGCGCGGGCAAGCTCTCCGCCTGCCGCGCCCAATAC
TACTGCGAGCGCACCCTCCAAGAACACGACATGCTCTCCTTCGCTCCCTC
CCTCATCGCCGCCACCTCCATCCTTCTGGCCCTCAAGACGAACTCCAACC
CTGGCCTGCCCTTTGCGTCCCTCCGTTCCTCCGCCCCGCCCTCCCCCTCT
TCATACTGGCCGGCATCCCTGTCGCGCTACTCAGGCTACACAGAAGAGGA
GATGGCGGCGTGTGCGCGGCGGGTGTGTGAGCACGTCAAGACCACGGTGA
CTACCCTTTCGGGCCGCAAGCTCGATGCTGTCAAGAGAAAGTTCGCGGGG
GGCGTGTTCCTGGCAGCCAGCAAAATGGAACCTCCTGCCTATGGAGAGGG
GGATGGAGGCGGAGGCGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAG
AAGGAGGAGGAGGAGGGGGAGAAAATATGCCTGTGGTTGGAGGGGAGGAC
ATAGCGGTGATGGGGGGAGGGGTAGTGATGGGAGGAGGAGAAGCAGCAGG
AGGAGGAGGAGGAGCAGGAGGAGGAGCGGTGGCAGCAGCAGCAGCAGCAG
CAGCAGCGGTAGGAGGAGCAGGTGTGGTGGCCGGGGAGATGGGACAATTG
TAGGGAGGGAGGACAAACGAGAAAGAGGAACATCGCAGGGAGGGAGGGAA
GGAAGGAAGGTAGTGAAGGGAGGAATATAGTAGGGAGGGAGGAGGGGAAG
GGTATGATAGGAGGAAGGGAAGGTGATGAAAGTGAAGTAAGTAGTGTAAG
TGTTGTCAACAGCAAAAGAAATAAAGGAGAGGAAGAAGGGGATCGTACAA
TTTAATGAAGGTGAAGGGGGAACAGAAAAATGAGAAAGAGGCAAATTTCA
AAAAGCAGACAAAGACACCTCACAACCACCGAATGAGAAGAAGGGCGAGC
ACCAGCACTTGCCAAGGCAAAACTTGACCTCCCCCTGGCACCACGCACAG
AGAGTGTGTACACTAGCTAGGCAACGAAAGAATTTTTAGAAAAACACATC
AAG

protein sequence of NO07G04620.2

>NO07G04620.2-protein ID=NO07G04620.2-protein|Name=NO07G04620.2|organism=Nannochloropsis oceanica|type=polypeptide|length=548bp
MYSMTKDRGGGGGGVGVTSKRNTRSSSNPSATAAGAHQHAVGLSNTRTTT
TTTTRGMTRQRQHQHKEHVPPQLLVQPPLWQHPKIINTSSSTSSSTSTSR
SSSSSSSGGNGGGSHPPSLILLQAQCLQVALQGISHTGSPTSSSVSPFLS
GQERDALRRLAVYLLSLTVPKEGSKDGEEQVEQQQTIKGGEPSLMEVVVA
DGEEVMGDEAQMPGNVGPRRQPLQHARAPERQEEKGSDCSITYSGDRGRN
RKGRVKGKERLHAQPALQQAATLSFEAAAFSSSFPSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSATRLKRPSIRTTSTPTSEGWLIGPSFSSSPVSPPRA
LRRPRLTKGNQSSCSFATTVSTKQEKKDGLQALPESVWQHALSFVPAKNL
YAVMRTSRSFFTMTSPFEGIAATTGLLSITLPFSSLCPLFPIAEIPPLPE
PWFDVHYFLSPPSLRPTPGFYHHWNLRAAEALHRPRPYISKQRHLNAKMR
AILLDWVTDGIERGREGGKEGDALSFNSIVLLKSRLCLSPFLSLAAS*

mRNA from alignment at chr7:1302238..1305370-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G04620.2 ID=NO07G04620.2|Name=NO07G04620.2|organism=Nannochloropsis oceanica|type=mRNA|length=3133bp|location=Sequence derived from alignment at chr7:1302238..1305370- (Nannochloropsis oceanica)
ATGTACAGCATGACTAAAGATAGAGGGGGCGGAGGCGGGGGCGTGGGAGT
CACGTCAAAGCGCAACACTCGCAGCTCCAGCAATCCAAGTGCCACTGCGG
CAGGTGCTCATCAACATGCCGTCGGCCTCTCCAACACAAGGACCACCACA
ACCACGACCACAAGAGGTATGACGCGGCAGCGTCAGCACCAGCACAAGGA
GCATGTGCCGCCACAATTGCTAGTGCAGCCGCCCCTCTGGCAACATCCCA
AAATCATCAACACGAGCAGCAGCACCAGCAGCAGCACTAGCACCAGCAGA
AGCAGCAGCAGTAGTAGCAGTGGCGGTAATGGCGGCGGCAGTCATCCCCC
CTCCCTCATCCTATTGCAGGCGCAATGCCTGCAAGTGGCCCTCCAAGGAA
TTTCGCACACCGGTTCCCCCACTTCGTCCTCCGTCTCCCCTTTCCTCAGC
GGACAGGAACGTGACGCTCTCCGCCGTCTTGCTGTCTACCTACTCAGCTT
GACGGTGCCCAAAGAGGGCAGCAAGGATGGAGAGGAACAAGTAGAGCAAC
AGCAGACGATTAAAGGTGGAGAGCCATCACTTATGGAGGTGGTGGTAGCG
GATGGCGAGGAGGTGATGGGAGATGAAGCGCAGATGCCAGGCAACGTGGG
CCCCAGGCGGCAGCCACTTCAGCACGCCCGAGCTCCCGAAAGACAGGAAG
AGAAAGGAAGCGATTGCAGCATTACATATAGTGGCGATAGAGGCCGTAAC
AGGAAGGGCAGAGTCAAGGGCAAGGAGCGGTTGCACGCACAGCCAGCATT
ACAGCAAGCAGCCACTCTTTCGTTCGAGGCTGCCGCCTTCTCTTCTTCCT
TCCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCATCCTCCTCCTCTTCTTCCTCCTCATCCTCCTCTAGTGCCACACG
CCTGAAGAGGCCAAGCATTCGCACCACTTCCACTCCTACTTCCGAAGGAT
GGCTGATCGGCCCCTCCTTTTCCTCTTCGCCTGTCTCCCCTCCCCGCGCC
TTGCGGCGTCCCCGCCTGACCAAAGGCAACCAGTCCTCGTGCTCTTTCGC
CACAACAGTGTCCACCAAGCAAGAAAAAAAGGACGGACTGCAGGCTTTGC
CCGAGTCGGTATGGCAGCACGCCTTGTCCTTCGTCCCAGCTAAGAACCTG
TATGCCGTCATGCGCACCTCCAGGTCCTTCTTCACCATGACATCGCCCTT
CGAAGGTATCGCCGCTACCACGGGCTTGCTTTCAATCACCCTCCCTTTCT
CTTCTCTCTGTCCGCTCTTCCCCATAGCTGAAATTCCACCTCTTCCCGAG
CCGTGGTTTGACGTTCACTATTTCCTATCCCCTCCGTCCCTCCGCCCCAC
CCCAGGTTTTTACCACCACTGGAATCTTCGCGCCGCGGAGGCGCTCCACC
GTCCTAGACCCTACATCAGCAAGCAAAGACACTTGAATGCCAAAATGCGA
GCTATTCTATTGGACTGGGTCACAGACGGTATAGAGAGAGGGAGGGAAGG
AGGGAAGGAGGGTGATGCGCTTTCCTTCAACTCGATTGTTTTACTCAAGT
CACGTTTATGTCTCTCGCCCTTTCTCTCCCTCGCTGCCTCCTAGTGCATC
AGTCCCTGTCCTTCCTGCCGGCCACTTTGCACAGGACCGCGTACGTGCTT
GATCATGTAAGGAGGGAGGGGGGATGAGAGGGAGAAGAGGGGGGAGGGGG
GAGGGGGACATGCAACTGGCTCATAGACCCACCGACACACTCTCCCTTCC
TCCCCTTCTTCCTCCCCCGCACCCTGTCTGCCTCAGTTCTTGAGCCGCAC
CGACAATGTGACGCGGGAGAAGCTGCAGCTGGTGGGTGTCACGGCCTTCA
TGATAGCGGCGAAAGGGATCGAGGCATCTCCGCCCGAGCACGACGACTGC
GCGTACTGGACCGACAACGCCTACAGCGGGGAGGAGGTTAGCCAGATGGA
GATTCGGATGCTCAAGGCTCTGCCTCCGTCCGCTCGCCCGCCCTCCCTCC
CTCCCACCGCCCTGGACTTCTTGTCACTGTACCTGAAGGAGGCAAGCGCG
GGCAAGCTCTCCGCCTGCCGCGCCCAATACTACTGCGAGCGCACCCTCCA
AGAACACGACATGCTCTCCTTCGCTCCCTCCCTCATCGCCGCCACCTCCA
TCCTTCTGGCCCTCAAGACGAACTCCAACCCTGGCCTGCCCTTTGCGTCC
CTCCGTTCCTCCGCCCCGCCCTCCCCCTCTTCATACTGGCCGGCATCCCT
GTCGCGCTACTCAGGCTACACAGAAGAGGAGATGGCGGCGTGTGCGCGGC
GGGTGTGTGAGCACGTCAAGACCACGGTGACTACCCTTTCGGGCCGCAAG
CTCGATGCTGTCAAGAGAAAGTTCGCGGGGGGCGTGTTCCTGGCAGCCAG
CAAAATGGAACCTCCTGCCTATGGAGAGGGGGATGGAGGCGGAGGCGGAG
GTGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGGGGA
GAAAATATGCCTGTGGTTGGAGGGGAGGACATAGCGGTGATGGGGGGAGG
GGTAGTGATGGGAGGAGGAGAAGCAGCAGGAGGAGGAGGAGGAGCAGGAG
GAGGAGCGGTGGCAGCAGCAGCAGCAGCAGCAGCAGCGGTAGGAGGAGCA
GGTGTGGTGGCCGGGGAGATGGGACAATTGTAGGGAGGGAGGACAAACGA
GAAAGAGGAACATCGCAGGGAGGGAGGGAAGGAAGGAAGGTAGTGAAGGG
AGGAATATAGTAGGGAGGGAGGAGGGGAAGGGTATGATAGGAGGAAGGGA
AGGTGATGAAAGTGAAGTAAGTAGTGTAAGTGTTGTCAACAGCAAAAGAA
ATAAAGGAGAGGAAGAAGGGGATCGTACAATTTAATGAAGGTGAAGGGGG
AACAGAAAAATGAGAAAGAGGCAAATTTCAAAAAGCAGACAAAGACACCT
CACAACCACCGAATGAGAAGAAGGGCGAGCACCAGCACTTGCCAAGGCAA
AACTTGACCTCCCCCTGGCACCACGCACAGAGAGTGTGTACACTAGCTAG
GCAACGAAAGAATTTTTAGAAAAACACATCAAG

Coding sequence (CDS) from alignment at chr7:1302238..1305370-

>NO07G04620.2 ID=NO07G04620.2|Name=NO07G04620.2|organism=Nannochloropsis oceanica|type=CDS|length=1644bp|location=Sequence derived from alignment at chr7:1302238..1305370- (Nannochloropsis oceanica)
ATGTACAGCATGACTAAAGATAGAGGGGGCGGAGGCGGGGGCGTGGGAGT
CACGTCAAAGCGCAACACTCGCAGCTCCAGCAATCCAAGTGCCACTGCGG
CAGGTGCTCATCAACATGCCGTCGGCCTCTCCAACACAAGGACCACCACA
ACCACGACCACAAGAGGTATGACGCGGCAGCGTCAGCACCAGCACAAGGA
GCATGTGCCGCCACAATTGCTAGTGCAGCCGCCCCTCTGGCAACATCCCA
AAATCATCAACACGAGCAGCAGCACCAGCAGCAGCACTAGCACCAGCAGA
AGCAGCAGCAGTAGTAGCAGTGGCGGTAATGGCGGCGGCAGTCATCCCCC
CTCCCTCATCCTATTGCAGGCGCAATGCCTGCAAGTGGCCCTCCAAGGAA
TTTCGCACACCGGTTCCCCCACTTCGTCCTCCGTCTCCCCTTTCCTCAGC
GGACAGGAACGTGACGCTCTCCGCCGTCTTGCTGTCTACCTACTCAGCTT
GACGGTGCCCAAAGAGGGCAGCAAGGATGGAGAGGAACAAGTAGAGCAAC
AGCAGACGATTAAAGGTGGAGAGCCATCACTTATGGAGGTGGTGGTAGCG
GATGGCGAGGAGGTGATGGGAGATGAAGCGCAGATGCCAGGCAACGTGGG
CCCCAGGCGGCAGCCACTTCAGCACGCCCGAGCTCCCGAAAGACAGGAAG
AGAAAGGAAGCGATTGCAGCATTACATATAGTGGCGATAGAGGCCGTAAC
AGGAAGGGCAGAGTCAAGGGCAAGGAGCGGTTGCACGCACAGCCAGCATT
ACAGCAAGCAGCCACTCTTTCGTTCGAGGCTGCCGCCTTCTCTTCTTCCT
TCCCGTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCATCCTCCTCCTCTTCTTCCTCCTCATCCTCCTCTAGTGCCACACG
CCTGAAGAGGCCAAGCATTCGCACCACTTCCACTCCTACTTCCGAAGGAT
GGCTGATCGGCCCCTCCTTTTCCTCTTCGCCTGTCTCCCCTCCCCGCGCC
TTGCGGCGTCCCCGCCTGACCAAAGGCAACCAGTCCTCGTGCTCTTTCGC
CACAACAGTGTCCACCAAGCAAGAAAAAAAGGACGGACTGCAGGCTTTGC
CCGAGTCGGTATGGCAGCACGCCTTGTCCTTCGTCCCAGCTAAGAACCTG
TATGCCGTCATGCGCACCTCCAGGTCCTTCTTCACCATGACATCGCCCTT
CGAAGGTATCGCCGCTACCACGGGCTTGCTTTCAATCACCCTCCCTTTCT
CTTCTCTCTGTCCGCTCTTCCCCATAGCTGAAATTCCACCTCTTCCCGAG
CCGTGGTTTGACGTTCACTATTTCCTATCCCCTCCGTCCCTCCGCCCCAC
CCCAGGTTTTTACCACCACTGGAATCTTCGCGCCGCGGAGGCGCTCCACC
GTCCTAGACCCTACATCAGCAAGCAAAGACACTTGAATGCCAAAATGCGA
GCTATTCTATTGGACTGGGTCACAGACGGTATAGAGAGAGGGAGGGAAGG
AGGGAAGGAGGGTGATGCGCTTTCCTTCAACTCGATTGTTTTACTCAAGT
CACGTTTATGTCTCTCGCCCTTTCTCTCCCTCGCTGCCTCCTAG

Synonyms

Publications