NO07G04610.1, NO07G04610.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04610.1
Unique NameNO07G04610.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1271
Alignment locationchr7:1300439..1302236 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1300439..1302236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04610.1 vs.
Match: XP_005855424.1 (hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526]; EKU20931.1 hypothetical protein NGA_0121000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 428.7 bits (1101), Expect = 1.900e-116
Identity = 231/294 (78.57%), Postives = 255/294 (86.73%), Query Frame = 0 
Query:  100 DDQKEAE---------------EEDYSAMTRLREEAESPFRSLRFLVYGGVGASGAVGALTSITGALAAYTGVRGAVPLSQSGKDIAIDLGAIALAAVAWKLDSQTKARKLGRLSRGAKIAALKVQLQEGGEGGRAGERPVLSLADFRRDRGRARRVVIVAGGEEVVQTALAAAGAAELKQRLVDNAFLVVPVVLPAGPKEPSSILGLAQERLQGAVDEPHVGCPLLLREWQEYLAIEAAEARKQGIDPVKQGISVVLKLNGRVGQRAFGQPAWERLVGDVERRRRRGLDVTNI 379
            D+QK+AE               EEDYS MTRLREEAESPFRSLRFL+YGGVGASGA+GALT++TGALAA++GVRGAVPLS+SGKDIAIDLGAI LAA+ W LDSQTKARKLGRLSRGAKIA+LKVQ+Q+GG    AGERPVLSLADFRRDRG ARRVVI AGGE+VVQ AL  AG A +K+RL+ NAFLVVP+VLPA  ++  S+LGLAQERLQGA DEPHVG PLLLREWQ+YLA EAA ARKQGIDPV+QGISVVLKLNGRVGQRAFG+PAWERLVGDVERRRRRGLDVTNI
Sbjct:  102 DEQKDAEGRAQNILPDEGDVGVEEDYSVMTRLREEAESPFRSLRFLIYGGVGASGAIGALTALTGALAAFSGVRGAVPLSESGKDIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGG---AGERPVLSLADFRRDRGMARRVVIFAGGEDVVQAALNTAGEAGMKERLIRNAFLVVPLVLPADGEDNPSVLGLAQERLQGAQDEPHVGWPLLLREWQDYLAAEAAAARKQGIDPVQQGISVVLKLNGRVGQRAFGKPAWERLVGDVERRRRRGLDVTNI 392
The following BLAST results are available for this feature:
BLAST of NO07G04610.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855424.11.900e-11678.57hypothetical protein NGA_0121000 [Nannochloropsis ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04610NO07G04610Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04610.1NO07G04610.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04610.1.cds1NO07G04610.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04610.1.cds2NO07G04610.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04610.1 ID=NO07G04610.1|Name=NO07G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp
CAGGGACCTGATATATTTTTCTGTGAGGCAGCGTCGCCAAGCAAGGCCCG
CGTCAAACCCAAAATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCT
TCGCCGCAGGCGCGGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTG
TCCACCAGCAGCCAGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCC
GTCCGCCTTCCTCTTCCCTGCTTCCTCAAGAAGAGAGTCATTCCAGGCCA
CCCGCACTCGCCTCTCCTTCTCCCGCCGGCAAGACCCAGACGACGATGCC
CCCATTCCTCCACCAGCAACGCCAGCAGCACCAGCAGCACAACCGCAGTC
GTCCTTCCTCGACGACCAGAAAGAGGCTGAAGAGGAGGACTATTCAGCCA
TGACCAGGCTGAGGGAAGAAGCCGAGTCGCCCTTCCGCTCCCTGCGCTTC
CTTGTCTACGGCGGCGTCGGGGCCTCGGGGGCTGTGGGTGCGCTCACCTC
CATCACAGGCGCCCTGGCTGCCTACACCGGTGTTCGCGGCGCCGTCCCCC
TCAGTCAGTCTGGAAAGGACATTGCTATTGACCTGGGGGCGATCGCGCTG
GCAGCTGTGGCCTGGAAGCTCGACTCGCAAACGAAAGCACGGAAGCTGGG
AAGGCTGTCCAGGGGCGCCAAAATCGCGGCTCTCAAGGTCCAGCTCCAGG
AAGGGGGGGAAGGGGGCAGAGCGGGGGAGCGGCCAGTGCTGAGCTTGGCG
GATTTTAGGAGGGATCGGGGAAGGGCACGGAGGGTGGTGATCGTGGCAGG
GGGAGAGGAGGTGGTCCAGACCGCGTTGGCTGCAGCCGGCGCGGCGGAGC
TAAAGCAGCGGTTGGTTGATAACGCGTTCTTAGTCGTGCCGGTTGTGCTA
CCTGCAGGTCCCAAGGAGCCTTCCTCCATCCTGGGGCTTGCCCAAGAACG
ACTCCAAGGTGCCGTGGACGAGCCCCATGTCGGGTGCCCGCTGCTGTTGC
GGGAGTGGCAGGAATACCTGGCCATCGAGGCGGCAGAGGCACGGAAGCAG
GGCATTGACCCGGTGAAGCAGGGCATCTCTGTGGTCCTTAAGCTGAATGG
GAGGGTGGGCCAGCGGGCGTTCGGCCAGCCGGCCTGGGAAAGGCTAGTGG
GGGACGTGGAGCGGCGGAGGAGGAGGGGCTTGGATGTGACCAACATTTAA
TAAGGATAGGGTTAGGGTCAAGGACGAGGAAGGGAGGGAAGAGAAAGTAA
TCTAGTAAGTCATGGTGATGG
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protein sequence of NO07G04610.1

>NO07G04610.1-protein ID=NO07G04610.1-protein|Name=NO07G04610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MQGQACLVAVAFFAAGAAAFHLQPRVSAVSTSSQLRSQAISYGMHPSAFL
FPASSRRESFQATRTRLSFSRRQDPDDDAPIPPPATPAAPAAQPQSSFLD
DQKEAEEEDYSAMTRLREEAESPFRSLRFLVYGGVGASGAVGALTSITGA
LAAYTGVRGAVPLSQSGKDIAIDLGAIALAAVAWKLDSQTKARKLGRLSR
GAKIAALKVQLQEGGEGGRAGERPVLSLADFRRDRGRARRVVIVAGGEEV
VQTALAAAGAAELKQRLVDNAFLVVPVVLPAGPKEPSSILGLAQERLQGA
VDEPHVGCPLLLREWQEYLAIEAAEARKQGIDPVKQGISVVLKLNGRVGQ
RAFGQPAWERLVGDVERRRRRGLDVTNI*
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mRNA from alignment at chr7:1300439..1302236+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04610.1 ID=NO07G04610.1|Name=NO07G04610.1|organism=Nannochloropsis oceanica|type=mRNA|length=1798bp|location=Sequence derived from alignment at chr7:1300439..1302236+ (Nannochloropsis oceanica)
CAGGGACCTGATATATTTTTCTGTGAGGCAGCGTCGCCAAGCAAGGCCCG
CGTCAAACCCAAAATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCT
TCGCCGCAGGCGCGGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTG
TCCACCAGCAGCCAGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCC
GTCCGCCTTCCTCTTCCCTGCTTCCTCAAGGTGCGTGTCTGTCTGGCAAG
TGAATCGATCTTGGATGACGGGCTTGAACGAAGCAAAGTGAGGTGGTGTC
CGTCTGTTCGTCACACGTACCCCCTCATACCGTGCAATGCCAAGCAAGCA
GTGTTGAATAAGACCGGCAAGCTGCAAATACGTGTGCCTGACAAGCTGTA
AGCGGGTCGTCTTTCTTTTAATGGCGCATTATTTCCGGTGTATGGCATGT
CTTGAACCCTCCTCCCTTGCTTGCCTTCCCCTTTTACGCACTACTCCATG
CTGCACGACCAAGCAACTGTGTGAATCACAGGATGAGTCTGTCCGCTTGT
TGGGTCTTCCGCAAATCATGCTTCACCACCCTACTCTCCATCCTCGCTTC
CTTCACTCTCTCCCACTTAACCTCCTCTCCTCCCACACTGCATCTCTTCA
GCTCTGGCTCGTATCATCGACGATTGGTTATCCTTCTTTCCGCCCCGGCA
TCCTCCTTGGTATTTCCCTCGCAGCTCATTCCATCTAACCCTTTCACTAA
CCCACAGAAGAGAGTCATTCCAGGCCACCCGCACTCGCCTCTCCTTCTCC
CGCCGGCAAGACCCAGACGACGATGCCCCCATTCCTCCACCAGCAACGCC
AGCAGCACCAGCAGCACAACCGCAGTCGTCCTTCCTCGACGACCAGAAAG
AGGCTGAAGAGGAGGACTATTCAGCCATGACCAGGCTGAGGGAAGAAGCC
GAGTCGCCCTTCCGCTCCCTGCGCTTCCTTGTCTACGGCGGCGTCGGGGC
CTCGGGGGCTGTGGGTGCGCTCACCTCCATCACAGGCGCCCTGGCTGCCT
ACACCGGTGTTCGCGGCGCCGTCCCCCTCAGTCAGTCTGGAAAGGACATT
GCTATTGACCTGGGGGCGATCGCGCTGGCAGCTGTGGCCTGGAAGCTCGA
CTCGCAAACGAAAGCACGGAAGCTGGGAAGGCTGTCCAGGGGCGCCAAAA
TCGCGGCTCTCAAGGTCCAGCTCCAGGAAGGGGGGGAAGGGGGCAGAGCG
GGGGAGCGGCCAGTGCTGAGCTTGGCGGATTTTAGGAGGGATCGGGGAAG
GGCACGGAGGGTGGTGATCGTGGCAGGGGGAGAGGAGGTGGTCCAGACCG
CGTTGGCTGCAGCCGGCGCGGCGGAGCTAAAGCAGCGGTTGGTTGATAAC
GCGTTCTTAGTCGTGCCGGTTGTGCTACCTGCAGGTCCCAAGGAGCCTTC
CTCCATCCTGGGGCTTGCCCAAGAACGACTCCAAGGTGCCGTGGACGAGC
CCCATGTCGGGTGCCCGCTGCTGTTGCGGGAGTGGCAGGAATACCTGGCC
ATCGAGGCGGCAGAGGCACGGAAGCAGGGCATTGACCCGGTGAAGCAGGG
CATCTCTGTGGTCCTTAAGCTGAATGGGAGGGTGGGCCAGCGGGCGTTCG
GCCAGCCGGCCTGGGAAAGGCTAGTGGGGGACGTGGAGCGGCGGAGGAGG
AGGGGCTTGGATGTGACCAACATTTAATAAGGATAGGGTTAGGGTCAAGG
ACGAGGAAGGGAGGGAAGAGAAAGTAATCTAGTAAGTCATGGTGATGG
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Coding sequence (CDS) from alignment at chr7:1300439..1302236+

>NO07G04610.1 ID=NO07G04610.1|Name=NO07G04610.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr7:1300439..1302236+ (Nannochloropsis oceanica)
ATGCAAGGACAAGCCTGCCTCGTCGCAGTAGCTTTCTTCGCCGCAGGCGC
GGCTGCGTTCCATCTCCAGCCCAGAGTGTCTGCCGTGTCCACCAGCAGCC
AGCTGAGGTCTCAGGCCATCAGCTATGGCATGCACCCGTCCGCCTTCCTC
TTCCCTGCTTCCTCAAGAAGAGAGTCATTCCAGGCCACCCGCACTCGCCT
CTCCTTCTCCCGCCGGCAAGACCCAGACGACGATGCCCCCATTCCTCCAC
CAGCAACGCCAGCAGCACCAGCAGCACAACCGCAGTCGTCCTTCCTCGAC
GACCAGAAAGAGGCTGAAGAGGAGGACTATTCAGCCATGACCAGGCTGAG
GGAAGAAGCCGAGTCGCCCTTCCGCTCCCTGCGCTTCCTTGTCTACGGCG
GCGTCGGGGCCTCGGGGGCTGTGGGTGCGCTCACCTCCATCACAGGCGCC
CTGGCTGCCTACACCGGTGTTCGCGGCGCCGTCCCCCTCAGTCAGTCTGG
AAAGGACATTGCTATTGACCTGGGGGCGATCGCGCTGGCAGCTGTGGCCT
GGAAGCTCGACTCGCAAACGAAAGCACGGAAGCTGGGAAGGCTGTCCAGG
GGCGCCAAAATCGCGGCTCTCAAGGTCCAGCTCCAGGAAGGGGGGGAAGG
GGGCAGAGCGGGGGAGCGGCCAGTGCTGAGCTTGGCGGATTTTAGGAGGG
ATCGGGGAAGGGCACGGAGGGTGGTGATCGTGGCAGGGGGAGAGGAGGTG
GTCCAGACCGCGTTGGCTGCAGCCGGCGCGGCGGAGCTAAAGCAGCGGTT
GGTTGATAACGCGTTCTTAGTCGTGCCGGTTGTGCTACCTGCAGGTCCCA
AGGAGCCTTCCTCCATCCTGGGGCTTGCCCAAGAACGACTCCAAGGTGCC
GTGGACGAGCCCCATGTCGGGTGCCCGCTGCTGTTGCGGGAGTGGCAGGA
ATACCTGGCCATCGAGGCGGCAGAGGCACGGAAGCAGGGCATTGACCCGG
TGAAGCAGGGCATCTCTGTGGTCCTTAAGCTGAATGGGAGGGTGGGCCAG
CGGGCGTTCGGCCAGCCGGCCTGGGAAAGGCTAGTGGGGGACGTGGAGCG
GCGGAGGAGGAGGGGCTTGGATGTGACCAACATTTAA
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Synonyms
Publications