NO07G04590.1, NO07G04590.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04590.1
Unique NameNO07G04590.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1014
Alignment locationchr7:1294628..1295641 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1294628..1295641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G04590.1 vs.
Match: EWM26925.1 (protein ariadne [Nannochloropsis gaditana])

HSP 1 Score: 382.1 bits (980), Expect = 1.800e-102
Identity = 177/329 (53.80%), Postives = 226/329 (68.69%), Query Frame = 0
Query:    1 MFHDVYRRNYMTPPINRPLTTAAIY-NKRNACPICLELLPPKPRLGFLSFSRTKQGPSVGGGQVSCTSGHAYCTACLATYVDVSIIEGKTSHGTLRCPAERCTTPLSETLLRTLASHKAWKKHLRFVKEAKVGRNPLLRWCPQPNCAGVARLTRAPRRGHDGHYVAASCPVCTHIFCGNCGEGPHGEDGCDKAGDQAYAMWKKRKGETVKSCPGCGHHVEKTGGCNALVCSRCRTKFCWLCGLKAGKCKCLNMRFAVWHDDLQPVPPFRTLVNLLIIIIAGAWALAFVLVWIFVLLLYGPDEMMRRILFHRHILYQTCIIISQDLRDLM 329
            MFH + R+N      N   + +  Y    + CPICLE LPPK  L FLS    ++G +       C SGH YC  CL  YV+VSI EG+TSH TLRCP   C+TP  +TLL +LA+ +AW+KH  FV EAKV +NPLLRWCPQ NC GVARLT AP++ H+G YV+A+CPVC+  FCGNCG  PH    CD++G+QAYAMWKKRKG+ VK CPGCGHH+EK  GCNA+ C+RCRTK+CW CGLKA  C C+ MRFA+WH++ Q  PP   L N +II++A AW L  + V +     YG D+M+RRILF+R +LY+TC  +  D+ +L+
Sbjct:   78 MFHRLRRKN---DDFNTKKSLSTSYLTSHHYCPICLEWLPPKHPLRFLSLLLKREGLNFAAATACCPSGHEYCIPCLTIYVNVSINEGRTSHETLRCPLTHCSTPFQDTLLHSLATAEAWEKHKYFVNEAKVCQNPLLRWCPQSNCNGVARLTHAPQQDHEGIYVSATCPVCSEGFCGNCGGDPHRSKKCDQSGNQAYAMWKKRKGDAVKPCPGCGHHIEKGIGCNAMTCTRCRTKWCWSCGLKANACTCVGMRFAMWHEENQQFPPLHILFNGMIIMVATAWVLVILSVCLLTSFFYGTDKMVRRILFYRRLLYETCSFVWNDVTELV 403          
The following BLAST results are available for this feature:
BLAST of NO07G04590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26925.11.800e-10253.80protein ariadne [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04590NO07G04590Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04590.1NO07G04590.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04590.1.cds1NO07G04590.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04590.1 ID=NO07G04590.1|Name=NO07G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp
ATGTTCCACGACGTCTACCGTAGGAATTACATGACGCCGCCGATAAACAG
ACCCCTCACTACTGCCGCTATATATAACAAAAGGAATGCCTGCCCTATCT
GTTTGGAGCTCTTGCCTCCCAAGCCTCGCCTGGGCTTCTTATCTTTCTCA
CGGACCAAGCAGGGGCCAAGCGTGGGCGGCGGGCAAGTCTCATGCACCTC
GGGGCACGCCTACTGCACTGCTTGCCTAGCGACCTACGTGGATGTGTCCA
TCATTGAGGGAAAGACCAGTCATGGCACCCTTCGGTGCCCCGCTGAGAGA
TGCACGACGCCCCTGTCTGAAACCCTGCTGCGGACGTTGGCCTCGCACAA
GGCGTGGAAGAAGCATCTACGATTCGTGAAGGAGGCCAAGGTCGGTAGAA
ATCCTCTATTGCGATGGTGTCCTCAACCCAATTGTGCGGGAGTGGCGCGG
CTGACCCGTGCTCCGCGGCGAGGCCATGATGGACACTATGTAGCGGCATC
GTGCCCCGTCTGTACACATATATTCTGCGGTAACTGCGGCGAAGGCCCTC
ATGGGGAGGATGGTTGTGACAAGGCTGGCGATCAGGCTTATGCCATGTGG
AAGAAGCGAAAAGGTGAGACTGTCAAATCCTGTCCTGGATGCGGACACCA
TGTGGAGAAAACGGGTGGTTGCAATGCCCTCGTCTGCAGCCGCTGTCGAA
CGAAATTTTGTTGGTTATGTGGTTTAAAGGCAGGGAAGTGCAAGTGTTTA
AATATGCGCTTTGCGGTGTGGCATGATGATCTCCAGCCCGTGCCTCCATT
TCGCACATTGGTGAATCTTCTGATTATCATAATTGCTGGGGCATGGGCCT
TGGCTTTTGTATTAGTGTGGATTTTTGTCTTGTTGCTCTATGGACCAGAT
GAAATGATGCGCCGCATTTTGTTTCACCGCCACATACTGTACCAGACGTG
TATAATCATCTCACAGGATTTGAGGGACCTAATGGAGTGGATTTTGATGC
AATTTAGCAGGTAG
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protein sequence of NO07G04590.1

>NO07G04590.1-protein ID=NO07G04590.1-protein|Name=NO07G04590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MFHDVYRRNYMTPPINRPLTTAAIYNKRNACPICLELLPPKPRLGFLSFS
RTKQGPSVGGGQVSCTSGHAYCTACLATYVDVSIIEGKTSHGTLRCPAER
CTTPLSETLLRTLASHKAWKKHLRFVKEAKVGRNPLLRWCPQPNCAGVAR
LTRAPRRGHDGHYVAASCPVCTHIFCGNCGEGPHGEDGCDKAGDQAYAMW
KKRKGETVKSCPGCGHHVEKTGGCNALVCSRCRTKFCWLCGLKAGKCKCL
NMRFAVWHDDLQPVPPFRTLVNLLIIIIAGAWALAFVLVWIFVLLLYGPD
EMMRRILFHRHILYQTCIIISQDLRDLMEWILMQFSR*
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mRNA from alignment at chr7:1294628..1295641+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04590.1 ID=NO07G04590.1|Name=NO07G04590.1|organism=Nannochloropsis oceanica|type=mRNA|length=1014bp|location=Sequence derived from alignment at chr7:1294628..1295641+ (Nannochloropsis oceanica)
ATGTTCCACGACGTCTACCGTAGGAATTACATGACGCCGCCGATAAACAG ACCCCTCACTACTGCCGCTATATATAACAAAAGGAATGCCTGCCCTATCT GTTTGGAGCTCTTGCCTCCCAAGCCTCGCCTGGGCTTCTTATCTTTCTCA CGGACCAAGCAGGGGCCAAGCGTGGGCGGCGGGCAAGTCTCATGCACCTC GGGGCACGCCTACTGCACTGCTTGCCTAGCGACCTACGTGGATGTGTCCA TCATTGAGGGAAAGACCAGTCATGGCACCCTTCGGTGCCCCGCTGAGAGA TGCACGACGCCCCTGTCTGAAACCCTGCTGCGGACGTTGGCCTCGCACAA GGCGTGGAAGAAGCATCTACGATTCGTGAAGGAGGCCAAGGTCGGTAGAA ATCCTCTATTGCGATGGTGTCCTCAACCCAATTGTGCGGGAGTGGCGCGG CTGACCCGTGCTCCGCGGCGAGGCCATGATGGACACTATGTAGCGGCATC GTGCCCCGTCTGTACACATATATTCTGCGGTAACTGCGGCGAAGGCCCTC ATGGGGAGGATGGTTGTGACAAGGCTGGCGATCAGGCTTATGCCATGTGG AAGAAGCGAAAAGGTGAGACTGTCAAATCCTGTCCTGGATGCGGACACCA TGTGGAGAAAACGGGTGGTTGCAATGCCCTCGTCTGCAGCCGCTGTCGAA CGAAATTTTGTTGGTTATGTGGTTTAAAGGCAGGGAAGTGCAAGTGTTTA AATATGCGCTTTGCGGTGTGGCATGATGATCTCCAGCCCGTGCCTCCATT TCGCACATTGGTGAATCTTCTGATTATCATAATTGCTGGGGCATGGGCCT TGGCTTTTGTATTAGTGTGGATTTTTGTCTTGTTGCTCTATGGACCAGAT GAAATGATGCGCCGCATTTTGTTTCACCGCCACATACTGTACCAGACGTG TATAATCATCTCACAGGATTTGAGGGACCTAATGGAGTGGATTTTGATGC AATTTAGCAGGTAG
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Coding sequence (CDS) from alignment at chr7:1294628..1295641+

>NO07G04590.1 ID=NO07G04590.1|Name=NO07G04590.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr7:1294628..1295641+ (Nannochloropsis oceanica)
ATGTTCCACGACGTCTACCGTAGGAATTACATGACGCCGCCGATAAACAG
ACCCCTCACTACTGCCGCTATATATAACAAAAGGAATGCCTGCCCTATCT
GTTTGGAGCTCTTGCCTCCCAAGCCTCGCCTGGGCTTCTTATCTTTCTCA
CGGACCAAGCAGGGGCCAAGCGTGGGCGGCGGGCAAGTCTCATGCACCTC
GGGGCACGCCTACTGCACTGCTTGCCTAGCGACCTACGTGGATGTGTCCA
TCATTGAGGGAAAGACCAGTCATGGCACCCTTCGGTGCCCCGCTGAGAGA
TGCACGACGCCCCTGTCTGAAACCCTGCTGCGGACGTTGGCCTCGCACAA
GGCGTGGAAGAAGCATCTACGATTCGTGAAGGAGGCCAAGGTCGGTAGAA
ATCCTCTATTGCGATGGTGTCCTCAACCCAATTGTGCGGGAGTGGCGCGG
CTGACCCGTGCTCCGCGGCGAGGCCATGATGGACACTATGTAGCGGCATC
GTGCCCCGTCTGTACACATATATTCTGCGGTAACTGCGGCGAAGGCCCTC
ATGGGGAGGATGGTTGTGACAAGGCTGGCGATCAGGCTTATGCCATGTGG
AAGAAGCGAAAAGGTGAGACTGTCAAATCCTGTCCTGGATGCGGACACCA
TGTGGAGAAAACGGGTGGTTGCAATGCCCTCGTCTGCAGCCGCTGTCGAA
CGAAATTTTGTTGGTTATGTGGTTTAAAGGCAGGGAAGTGCAAGTGTTTA
AATATGCGCTTTGCGGTGTGGCATGATGATCTCCAGCCCGTGCCTCCATT
TCGCACATTGGTGAATCTTCTGATTATCATAATTGCTGGGGCATGGGCCT
TGGCTTTTGTATTAGTGTGGATTTTTGTCTTGTTGCTCTATGGACCAGAT
GAAATGATGCGCCGCATTTTGTTTCACCGCCACATACTGTACCAGACGTG
TATAATCATCTCACAGGATTTGAGGGACCTAATGGAGTGGATTTTGATGC
AATTTAGCAGGTAG
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Synonyms
Publications