NO07G04570.1, NO07G04570.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04570.1
Unique NameNO07G04570.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2458
Alignment locationchr7:1286144..1289881 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1286144..1289881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04570.1 vs.
Match: EWM26923.1 (RNA polymerase Rpc34 [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 2.200e-106
Identity = 209/248 (84.27%), Postives = 222/248 (89.52%), Query Frame = 0 
Query:   37 TGGGSTAGGGGGGGGGGEGVILLRDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAENRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGVSKVELAAEEVQLIINSLAYDMKIEPVRSGVLGAL 285
            T    T G GGG      G   LR+EFLSLCL+HAEGLR+EQLR+HF ERYL LVPIINSCLAEN IRCMKTE NELVYQA+DPNLAEKM+NLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQL+KSTSSISSKTRKLYLL+DLEPAKEITGGPWYTEHEFDHEFIEELSRAIY FIKQQRKPPSL  I+DYVR SGVSKVELA  EVQLIINSLAYDMKIEPV++ ++GAL
Sbjct:    3 TSRKETTGAGGGQHKDESGN--LREEFLSLCLSHAEGLRNEQLREHFTERYLHLVPIINSCLAENLIRCMKTESNELVYQAVDPNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQPALKKILKNLESRQLVKSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEELSRAIYHFIKQQRKPPSLGIIADYVRNSGVSKVELAPGEVQLIINSLAYDMKIEPVQNSLVGAL 248
The following BLAST results are available for this feature:
BLAST of NO07G04570.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26923.12.200e-10684.27RNA polymerase Rpc34 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04570NO07G04570Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04570.1NO07G04570.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04570.1.cds1NO07G04570.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds2NO07G04570.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds3NO07G04570.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds4NO07G04570.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds5NO07G04570.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds6NO07G04570.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds7NO07G04570.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds8NO07G04570.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04570.1.cds9NO07G04570.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04570.1 ID=NO07G04570.1|Name=NO07G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=2458bp
ATGTCGAGCAATGCCATTGAAAATCAAGGCGTAGGGGAAGCTATCAGCAC
CAAAGCTGGGGGCAGCAGCACCAGTAGCAGCAGCATCACCACCAGAGCAA
TGGCAACGACGGGAGGAGGGTCTACGGCAGGAGGAGGAGGAGGAGGCGGC
GGAGGGGGAGAGGGTGTGATCCTGCTGAGAGACGAGTTTTTATCGTTATG
CCTTAACCATGCCGAGGGACTGCGCGACGAGCAACTACGAAAACATTTTG
CTGAGCGATACTTGCAGCTGGTGCCGATCATTAACAGTTGTCTTGCCGAG
AACCGCATCCGCTGCATGAAGACAGAGCGGAACGAATTGGTCTACCAAGC
CATGGACCCCAACCTGGCCGAGAAGATGAAAAACCTGGGCGCGGAGCAGC
TGTTGGTGTATCAGGTGGTGGAAAAGGCGGGCAACAAGGGGATCTGGCAC
AAAGACATCCGGTCCCAGACGTCGTTACAACAGCCGGCCCTGAAGAAGAT
TCTGAAGAATTTGGAGTCGCGGCAGCTGATCAAGAGCACCTCGTCCATCA
GCAGCAAGACTCGGAAGCTCTACCTCCTCTTCGACCTCGAACCCGCCAAG
GAAATCACCGGCGGGCCATGGTACACGGAGCACGAGTTTGACCACGAGTT
TATCGAGGAGCTCTCTCGGGCTATCTACATGTTCATCAAGCAGCAGCGCA
AGCCCCCCTCCCTCGCAGCCATTAGTGACTACGTCCGCACATCCGGGGTC
TCGAAGGTGGAGCTCGCCGCAGAGGAAGTGCAGCTGATCATTAACAGCCT
GGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGGCGTTTTGGGTGCCC
TCCACACCCCCGACGGCGGCCCCTGCTATAAGGTCTCACGGCACGTGACG
CCCTTGAATCACTTCACCGACTTTCCCTGTGGCCGATGCCCTGTCCAAGC
GCAGTGTGAGGAGGGCGGAGAGATCTCGCCCGCGGCTTGTCGGTATTTCA
ATCGCTGGCTTGAGCTCAAGGACGGAGGGGGAGTGGGAGGAGGCACCGTG
GGAGGAGGGATGATAGAATTTTGATACATTAGGATATACATAAGAAGTGA
AAAAAAGAATTTAGACAAAATGTGAAGAAGGAGTAGAAGGGGGACAAGCA
ATGATTTAAAATTTGGATCGTCGAGTTTGATTTGATCATTTCCTTGGGTT
CTTGGACTTTGTATATCACTCCATTACTACATCACCTTATCACAACCAAA
CACGATACACCACCACCTCACTACATCAATATATATTTCTATGCCCATGT
ATCAAGATATCAATACCTTACTAGATCAGTATTTGAGTTGACTGACTTCA
ATATCTTACAAGATTAACATCTTGCTAATATCTCGCGTTTTCAATTTGTT
TTAAGATCCATGCCAATGTTGGTACCTTATCTCGTTTGTGTGCCATCACT
CCCTCTCCCTCTCACCTTCCCTCCCTCCCAAACGGACTCGCCCACACACC
TCTACCACCACCCCCTCTCACTTCATCGTACTTCTTTCCAATGTTAATCC
TGTCGTCATTCTTCCTGGATCTGGCAGTAAGCGAGGCTCGCCTCCCCCTC
AGTCAGTAAATACACTCGCACATGCAGTGCCTTGGCCTCCTCCAAAGGGT
GGGGGAAAGCGCCCGGCACCACCACACACGCCTTCACCGCCCCATCCTCC
TCCTCTTCCTCCTCCTCCAGCTTCCCTTCCCTTCCCCTCCCTCCCTCCTT
CCCTACGGTAGGATCAGAAGAAAAAGAAGAAGAGCGCGAAAAGTCAATCA
AGCCTTCGTCATCCCTCAACGGCTTCCTCAATTTCTTCTCTTTCATGGAC
ATTTCCTCGCACATTTGTAATATCCTCGATTCAATATCGGGATAAGGCTG
TGTGATCCGCGCAAAGGAAAGGCTGCGCTGGATGATCTCGCGTTGGGACT
GGTTGGAGAGGGACAGAGACAGAGGGAAGGATGCTAAGGGATCACATGAA
TCACCCACAATTTGACGGAAAGGGGGAATAAAAACCGCCCCTCCCTCGCT
TCCTCGCTCCCTCCCTCGCTCCCTCTCTCCCTCCTTCCCTCGCTCCCTAC
CTTGTGTCGCTTCTCCTTGACGAAGCAGTACCCGGACTTCCTCCCCTTCT
CCCTCACCATGATGTCCAGCAGGCGCCGATACTGGACTGCGGCCACTGGC
TGCTCGTTCCGAAGGACCAAGCCGCCGCTGGTGACCCGCTTCTCCATTCG
AAAACGCGTCGGGCGGGCAGGCAAAGGCAAGGGGGTAGGAATGGAGGAGG
AAAGGGAGGACGAGGCAGGGCCCCCACCCGTCGCTTCCTTGAGACCTGGC
TCGAACTCCTCCTCCTCGCCCCCGCGGCCCGTGCTATTTCTTCTTTCTTC
CTCCCCCCTTCCCTCCGTTCCTACCCTCTCCTTGCTTCTTCCCCTCCTCC
CTCCCCAT
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protein sequence of NO07G04570.1

>NO07G04570.1-protein ID=NO07G04570.1-protein|Name=NO07G04570.1|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSSNAIENQGVGEAISTKAGGSSTSSSSITTRAMATTGGGSTAGGGGGGG
GGGEGVILLRDEFLSLCLNHAEGLRDEQLRKHFAERYLQLVPIINSCLAE
NRIRCMKTERNELVYQAMDPNLAEKMKNLGAEQLLVYQVVEKAGNKGIWH
KDIRSQTSLQQPALKKILKNLESRQLIKSTSSISSKTRKLYLLFDLEPAK
EITGGPWYTEHEFDHEFIEELSRAIYMFIKQQRKPPSLAAISDYVRTSGV
SKVELAAEEVQLIINSLAYDMKIEPVRSGVLGALHTPDGGPCYKVSRHVT
PLNHFTDFPCGRCPVQAQCEEGGEISPAACRYFNRWLELKDGGGVGGGTV
GGGMIEF*
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mRNA from alignment at chr7:1286144..1289881+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04570.1 ID=NO07G04570.1|Name=NO07G04570.1|organism=Nannochloropsis oceanica|type=mRNA|length=3738bp|location=Sequence derived from alignment at chr7:1286144..1289881+ (Nannochloropsis oceanica)
ATGTCGAGCAATGCCATTGAAAATCAAGGTGAAGAGGCAAAAGTTGACAA
CGGCTCTTTTCGACCTCCCCTACTCCCTCATATACACCATCAAACAGATA
TCAAGACCCATCATCACCACGCGACGCCTCACATACATTTCGTGCATGCA
TATACCCCCACAGGCGTAGGGGAAGCTATCAGCACCAAAGCTGGGGGCAG
CAGCACCAGTAGCAGCAGCATCACCACCAGAGCAATGGCAACGACGGGAG
GAGGGTCTACGGCAGGAGGAGGAGGAGGAGGCGGCGGAGGGGGAGAGGGT
GTGATCCTGCTGAGAGACGAGTTTTTATCGTTATGCCTTAACCATGCCGA
GGTAAGCAGGCGGAGGTAGGGAGGGGTAGGGTGTGTGTGCGCTTGTTTCT
ACAGCTTGGCTCTAGCGTTCACCCCCCTTCCTGTCCCTCCCTCCTTCCCA
ATCTCATGTGCTCCACTACCCACCAGGGACTGCGCGACGAGCAACTACGA
AAACATTTTGCTGAGCGATACTTGCAGCTGGTGCCGATCATTAACAGTTG
TCTTGCCGAGGTAAGGAGGCAGGAGGAAAGAAGATAAGGGATAGGGATGG
TGGTGAGGTAGGCAGGAGAGGTAGAGCTTGCATGGTGTTGAAGGGCTTCC
CAGTCAAGTTCGAAGGAGTTGCAAAAAGAGGTAAACGGCCCTCCTCATAC
ACTCAAACCCACTCGTTTGGCTTTCTCTCCCCCCCCCCCCCAAGAACCGC
ATCCGCTGCATGAAGACAGAGCGGAACGAATTGGTCTACCAAGCCATGGA
CCCCAACCTGGCCGAGAAGATGAAAAACCTGGGGTAAGCGGATCCCGGAG
GGTGGGAAGGAGGGCAAAAGCAAGATCCTAGCGTCTTCCTCGACGGTCAT
GTCACTGGCTTGTTGTCTCACCGTCCGCCCGCCCCTCATTTCCTCCCTCT
CTTCCTTCCCCTCCCCCCTTCATCCTTCGTCTCCATTCCTTAGCGCGGAG
CAGCTGTTGGTGTATCAGGTGGTGGAAAAGGCGGGCAACAAGGGGATCTG
GCACAAAGACATCCGGTCCCAGACGTCGTTACAACAGCCGGTGAGAAAGA
CAGGCAGGGAGGCAGGGAGGGAGGAGGCAGGGAGAGAGGGAGGGAGGGTG
AGGGTGAGAGGGTAGGGGAGTGTAGTTAGGCAGGTGGGCAAAGATGGCAT
CATTTCTATTTTTTCTTTTCCCGTACATTTATCCCGCTATCTCCAATGTT
TTCTCTTTCCCTCCCTCTCTTCCTTCCTCCCTCCTCGCCACAGGCCCTGA
AGAAGATTCTGAAGAATTTGGAGTCGCGGCAGCTGATCAAGAGCACCTCG
TCCATCAGCAGCAAGACTCGGAAGCTCTACCTCCTCTTCGACCTCGAACC
CGCCAAGGAAATCACCGGCGGGCCATGGTATGCAGACAGACAGACAGACA
GACAGACAGACAGACAGACAGGGAGGGAGGGAGGGTGTGATTTTGGCCGT
GAGCAATAGGAAACACACAATCCTCTCACTTCTCACGTTTTCCTCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCGCTCCCTCCCTCCCTCCAGGTACAC
GGAGCACGAGTTTGACCACGAGTTTATCGAGGAGCTCTCTCGGGCTATCT
ACATGTTCATCAAGCAGCAGCGCAAGCCCCCCTCCCTCGCAGCCATTAGT
GACTACGTCCGCACATCCGGGGTCTCGAAGGTAGGGAGGCAGGGAGGCAG
GAAGGGAGGGATGGAGGGAGGGAGGGCGGGCGGTCAGGAGGGAGGGTGTA
TGTGCGGAGCATCGATGCTTTTTGTTCTTACCCTCCCTCCCTCCCTTCCT
GCCCCGACCTGACAGGTGGAGCTCGCCGCAGAGGAAGTGCAGCTGATCAT
TAACAGCCTGGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGGCGTTT
TGGGTGCCCTCCACGTACGTGTCTCTTCGCCGTCTTTTCCTCCCTTCCTC
CCTCCCCCATTCGGCGTCGTCTTCGCCTTCTCCGTTTCCTCTCCAGTCCT
CCTCCTTCTCTCCCTCCCCCTCTCTCGGTGCCTACCATCCTCCCCACACA
TTCTTTCTTTCCCCCTTCCCCCCCCTCCCTTACAGACCCCCGACGGCGGC
CCCTGCTATAAGGTCTCACGGCACGTGACGCCCTTGAATCACTTCACCGA
CTTTCCCTGTGGCCGATGCCCTGTCCAAGCGCAGTGTGAGGAGGGCGGAG
AGATCTCGCCCGCGGCTTGTCGGTATTTCAATCGCTGGCTTGAGCTCAAG
GACGGAGGGGGAGTGGGAGGAGGCACCGTGGGAGGAGGGATGATAGAATT
TTGATACATTAGGATATACATAAGAAGTGAAAAAAAGAATTTAGACAAAA
TGTGAAGAAGGAGTAGAAGGGGGACAAGCAATGATTTAAAATTTGGATCG
TCGAGTTTGATTTGATCATTTCCTTGGGTTCTTGGACTTTGTATATCACT
CCATTACTACATCACCTTATCACAACCAAACACGATACACCACCACCTCA
CTACATCAATATATATTTCTATGCCCATGTATCAAGATATCAATACCTTA
CTAGATCAGTATTTGAGTTGACTGACTTCAATATCTTACAAGATTAACAT
CTTGCTAATATCTCGCGTTTTCAATTTGTTTTAAGATCCATGCCAATGTT
GGTACCTTATCTCGTTTGTGTGCCATCACTCCCTCTCCCTCTCACCTTCC
CTCCCTCCCAAACGGACTCGCCCACACACCTCTACCACCACCCCCTCTCA
CTTCATCGTACTTCTTTCCAATGTTAATCCTGTCGTCATTCTTCCTGGAT
CTGGCAGTAAGCGAGGCTCGCCTCCCCCTCAGTCAGTAAATACACTCGCA
CATGCAGTGCCTTGGCCTCCTCCAAAGGGTGGGGGAAAGCGCCCGGCACC
ACCACACACGCCTTCACCGCCCCATCCTCCTCCTCTTCCTCCTCCTCCAG
CTTCCCTTCCCTTCCCCTCCCTCCCTCCTTCCCTACGGTAGGATCAGAAG
AAAAAGAAGAAGAGCGCGAAAAGTCAATCAAGCCTTCGTCATCCCTCAAC
GGCTTCCTCAATTTCTTCTCTTTCATGGACATTTCCTCGCACATTTGTAA
TATCCTCGATTCAATATCGGGATAAGGCTGTGTGATCCGCGCAAAGGAAA
GGCTGCGCTGGATGATCTCGCGTTGGGACTGGTTGGAGAGGGACAGAGAC
AGAGGGAAGGATGCTAAGGGATCACATGAATCACCCACAATTTGACGGAA
AGGGGGAATAAAAACCGCCCCTCCCTCGCTTCCTCGCTCCCTCCCTCGCT
CCCTCTCTCCCTCCTTCCCTCGCTCCCTACCTTGTGTCGCTTCTCCTTGA
CGAAGCAGTACCCGGACTTCCTCCCCTTCTCCCTCACCATGATGTCCAGC
AGGCGCCGATACTGGACTGCGGCCACTGGCTGCTCGTTCCGAAGGACCAA
GCCGCCGCTGGTGACCCGCTTCTCCATTCGAAAACGCGTCGGGCGGGCAG
GCAAAGGCAAGGGGGTAGGAATGGAGGAGGAAAGGGAGGACGAGGCAGGG
CCCCCACCCGTCGCTTCCTTGAGACCTGGCTCGAACTCCTCCTCCTCGCC
CCCGCGGCCCGTGCTATTTCTTCTTTCTTCCTCCCCCCTTCCCTCCGTTC
CTACCCTCTCCTTGCTTCTTCCCCTCCTCCCTCCCCAT
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Coding sequence (CDS) from alignment at chr7:1286144..1289881+

>NO07G04570.1 ID=NO07G04570.1|Name=NO07G04570.1|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at chr7:1286144..1289881+ (Nannochloropsis oceanica)
ATGTCGAGCAATGCCATTGAAAATCAAGGCGTAGGGGAAGCTATCAGCAC
CAAAGCTGGGGGCAGCAGCACCAGTAGCAGCAGCATCACCACCAGAGCAA
TGGCAACGACGGGAGGAGGGTCTACGGCAGGAGGAGGAGGAGGAGGCGGC
GGAGGGGGAGAGGGTGTGATCCTGCTGAGAGACGAGTTTTTATCGTTATG
CCTTAACCATGCCGAGGGACTGCGCGACGAGCAACTACGAAAACATTTTG
CTGAGCGATACTTGCAGCTGGTGCCGATCATTAACAGTTGTCTTGCCGAG
AACCGCATCCGCTGCATGAAGACAGAGCGGAACGAATTGGTCTACCAAGC
CATGGACCCCAACCTGGCCGAGAAGATGAAAAACCTGGGCGCGGAGCAGC
TGTTGGTGTATCAGGTGGTGGAAAAGGCGGGCAACAAGGGGATCTGGCAC
AAAGACATCCGGTCCCAGACGTCGTTACAACAGCCGGCCCTGAAGAAGAT
TCTGAAGAATTTGGAGTCGCGGCAGCTGATCAAGAGCACCTCGTCCATCA
GCAGCAAGACTCGGAAGCTCTACCTCCTCTTCGACCTCGAACCCGCCAAG
GAAATCACCGGCGGGCCATGGTACACGGAGCACGAGTTTGACCACGAGTT
TATCGAGGAGCTCTCTCGGGCTATCTACATGTTCATCAAGCAGCAGCGCA
AGCCCCCCTCCCTCGCAGCCATTAGTGACTACGTCCGCACATCCGGGGTC
TCGAAGGTGGAGCTCGCCGCAGAGGAAGTGCAGCTGATCATTAACAGCCT
GGCCTACGACATGAAAATAGAGCCCGTCCGCAGCGGCGTTTTGGGTGCCC
TCCACACCCCCGACGGCGGCCCCTGCTATAAGGTCTCACGGCACGTGACG
CCCTTGAATCACTTCACCGACTTTCCCTGTGGCCGATGCCCTGTCCAAGC
GCAGTGTGAGGAGGGCGGAGAGATCTCGCCCGCGGCTTGTCGGTATTTCA
ATCGCTGGCTTGAGCTCAAGGACGGAGGGGGAGTGGGAGGAGGCACCGTG
GGAGGAGGGATGATAGAATTTTGA
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Synonyms
Publications