NO07G04560.1, NO07G04560.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04560.1
Unique NameNO07G04560.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1720
Alignment locationchr7:1282280..1285729 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1282280..1285729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04560.1 vs.
Match: XP_005855422.1 (coatomer subunit epsilon [Nannochloropsis gaditana CCMP526]; EKU20929.1 coatomer subunit epsilon [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 409.1 bits (1050), Expect = 1.300e-110
Identity = 223/303 (73.60%), Postives = 240/303 (79.21%), Query Frame = 0 
Query:   26 MAEPDDLYTLRQEFYVGNFQAAINEGSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVRLLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKEALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEADKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPTHPYVTMLSTLDTAFDRLQAQFASHIVHA 329
            MAEPDDLYTLRQEFYVGNFQ +                        A LGLKEYDV+  EVKEGGDTPIALQAVR  A YE+ PEQREAV+   Q  L + ATAS PSLQTMAA I+LKEG VK+ALRAVH G TLEQRALMTAIYLR+DRLDHAQ+QLK MQA+DEDATLTQMTGAWVDLAQGGTGYRDAQLLFQEL+AKYG+SALLLNGL         YEEADK+L Q LREDPDKSNADTL+NL+ATAQHLHKP ETVAKLLSQLQK AP HPYV  L TL+ AFDRLQAQFASHIV+A
Sbjct:    1 MAEPDDLYTLRQEFYVGNFQDS------------------------ARLGLKEYDVIFGEVKEGGDTPIALQAVRWFAEYEAHPEQREAVVGKFQTSLQETATASCPSLQTMAAIIFLKEGLVKDALRAVHRGTTLEQRALMTAIYLRMDRLDHAQKQLKLMQASDEDATLTQMTGAWVDLAQGGTGYRDAQLLFQELVAKYGNSALLLNGL---------YEEADKYLAQCLREDPDKSNADTLINLIATAQHLHKPPETVAKLLSQLQKVAPDHPYVQNLGTLEGAFDRLQAQFASHIVNA 270
The following BLAST results are available for this feature:
BLAST of NO07G04560.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005855422.11.300e-11073.60coatomer subunit epsilon [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04560NO07G04560Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04560.1NO07G04560.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04560.1.cds1NO07G04560.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds2NO07G04560.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds3NO07G04560.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds4NO07G04560.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds5NO07G04560.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds6NO07G04560.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds7NO07G04560.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds8NO07G04560.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds9NO07G04560.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds10NO07G04560.1.cds10Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04560.1.cds11NO07G04560.1.cds11Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04560.1 ID=NO07G04560.1|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=1720bp
GCCTTGGCCCTTGCAAGTGCCCGCGGCTGAGGTCTTTCTCATCATATCAT
CACAGGCGTCATCGAGGCTGGGGGGCGATGCTTCCTTTGAATTAAGAAAC
CACACTCCTACGCGACCACACCATCACACAAACTACGTACATAGAAGGAT
TTCCAGTACACTAGCCTTTGGATCCGGGTCTTGTCTACTCTCTCTCCTTC
GTCCTTCTTCCCCTCGTCATCATGGCCCAAACGCACTTCTTCAGCGATGG
GCTCCCTTCCTTGCCTGCATACACCCCACTCATCCACACACATCTACCCC
CTTAATTGCACAGCACTCACCATGGCGGAACCGGACGATCTCTACACGCT
GCGTCAGGAATTTTACGTGGGCAACTTCCAGGCGGCCATCAACGAAGGTA
GTGCCTTGGGCCGCGTCAACCCCGACTTGGAGACGGAACGAGCCGAATTT
GTCTACCGAGCCCACCTGGGCCTCAAGGAGTACGACGTGGTCCTTCGTGA
GGTGAAGGAAGGCGGGGACACCCCTATAGCCCTCCAGGCCGTTCGCCTGC
TAGCCGTCTACGAGTCTCGCCCCGAGCAGCGTGAGGCGGTCTTGGCCACG
TTGCAGGCCCTCCTCAACGATGCCGCGACTGCGTCATCCCCGTCGCTGCA
GACCATGGCAGCCACCATCTACCTCAAAGAAGGCTCGGTCAAGGAAGCGC
TGCGGGCCGTGCACCTGGGCATGACCCTGGAGCAGCGTGCGCTCATGACC
GCCATCTACCTGCGCCTCGACCGCCTCGACCACGCCCAGAGGCAGCTCAA
GCAAATGCAAGCCGCGGACGAGGACGCGACCCTCACCCAAATGACGGGCG
CGTGGGTGGACTTGGCACAGGGCGGCACCGGCTACCGTGACGCCCAGCTG
CTTTTTCAGGAGCTTATTGCCAAGTACGGAAGCAGCGCCTTGCTCCTCAA
CGGGCTGGGCGTGGCCCTCATCCACCAGGGTCAGTACGAGGAGGCGGACA
AACACCTCATGCAGGCCCTGCGCGAGGACCCCGACAAGAGCAACGCGGAC
ACGCTGGTGAATCTGGTGGCCACAGCCCAGCACCTGCACAAGCCCCAAGA
GACGGTGGCGAAGCTGTTAAGCCAACTGCAGAAGTGCGCGCCCACCCACC
CCTACGTCACCATGCTCTCCACCTTAGACACTGCATTTGACAGGCTGCAG
GCGCAGTTTGCGTCGCACATCGTGCATGCATAAAGAGGGAGGAAGGGAGG
GAAAGGAGGGAGGGGTGGAGGGAGGGCACGGGGTACTGCAGAAGAGACAA
GAGGCGAACAAAGAAGAAGAAGGAAAAAAAGGTATAGACTCTCCTGAAAT
ACAAAAACGCTACCAGAAGAATGAAAGGTGTAACTGTGGTCGGTGATAAT
TTTCTATTCCCGATTTTTATTTGGTATTGTTGTACGTAAGTGCTTCAATT
TAATGAGGGAGCTTTGACAGAGAAGGTAGGAGCTTCCGAGGTAAGGGTGG
AGGTAGGGCGGTGGGAAGGAGGTTCCCTCCCTGTCTGCGACTGTCAAGTG
GAGAGAGGAGGAAGGAAGGTGCAGAGGGTGGAAGGGAAGGAGGAGGGGTG
GTGGAAAGCGCTTGACAGTGTTGGGGCGGCGATGTGGGCCGCTGTGGGAG
TGTAATGCTTGGCTTCGTGGTCGACCGCGAGCTGACGTCGCTTTGTAACG
TTAACATTGTTAAATTTGGG
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protein sequence of NO07G04560.1

>NO07G04560.1-protein ID=NO07G04560.1-protein|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MGSLPCLHTPHSSTHIYPLNCTALTMAEPDDLYTLRQEFYVGNFQAAINE
GSALGRVNPDLETERAEFVYRAHLGLKEYDVVLREVKEGGDTPIALQAVR
LLAVYESRPEQREAVLATLQALLNDAATASSPSLQTMAATIYLKEGSVKE
ALRAVHLGMTLEQRALMTAIYLRLDRLDHAQRQLKQMQAADEDATLTQMT
GAWVDLAQGGTGYRDAQLLFQELIAKYGSSALLLNGLGVALIHQGQYEEA
DKHLMQALREDPDKSNADTLVNLVATAQHLHKPQETVAKLLSQLQKCAPT
HPYVTMLSTLDTAFDRLQAQFASHIVHA*
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mRNA from alignment at chr7:1282280..1285729+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04560.1 ID=NO07G04560.1|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=mRNA|length=3450bp|location=Sequence derived from alignment at chr7:1282280..1285729+ (Nannochloropsis oceanica)
GCCTTGGCCCTTGCAAGTGCCCGCGGCTGAGGTCTTTCTCATCATATCAT
CACAGGCGTCATCGAGGCTGGGGGGCGATGCTTCCTTTGAATTAAGAAAC
CACACTCCTACGCGACCACACCATCACACAAACTACGTACATAGAAGGAT
TTCCAGTACACTAGCCTTTGGATCCGGGTCTTGTCTACTCTCTCTCCTTC
GTCCTTCTTCCCCTCGTCATCATGGCCCAAACGCACTTCTTCAGCGATGG
GCTCCCTTCCTTGCCTGCATACACCCCACTCATCCACACACATCTACCCC
CTTAATTGCACAGCACTCACCATGGCGGAACCGGACGATCTCTACACGCT
GCGTCAGGAATTTTACGTGGGCAACTTCCAGGTTCGAAAAAAGGGTGGGA
GGACAGGGAGGAGCATGGAGTATAGGGGATGACTTTCTGAGGCTCGAGCG
GGAGTCTTTGCCGCACTTTTGTCTTAGCAATTCCTCGCTTCGTCTTTGTT
AGAGAATGTGTGCGGCATTACCATTCTTCTGAATCCGCGCCTTCTTTTCC
TGGCTTTGCCGTACAATAGACCGAGAACCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCGTTTCCCGCTTCCCTCTTATGCAG
GCGGCCATCAACGAAGGTAGTGCCTTGGGCCGCGTCAACCCCGACTTGGA
GACGGAACGAGCCGAATTTGTCTACCGGTACGTTGGGAAAAGAGCAAAAA
GGAGTGAGAGTCTGAAGGAGGAGATGGCCACTGGCACCTATGTCTTTTTG
AGACGAACATTTCCGCCGTGTGTTGCTCACCGTTGTTCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCATCCTTCCTTTCTT
TTCCTTCCCTTGTATATAGAGCCCACCTGGGCCTCAAGGAGTACGACGTG
GTCCTTCGTGAGGTGAAGGAAGGCGGGGACACCCCTATAGGCAAGGGAGG
GAGGAAGGGAGGAAGGGAGGGAGGGAAGGACGAGAGGGCATGCAAGCGGT
ATTACTGTCTGGGATAGTCCCTGTAACCTTGCATTCACCTTTCCCTCCAT
TCCCCCCACTCCCTGTCCTCCCCTCATTCCCTGCAGCCCTCCAGGCCGTT
CGCCTGCTAGCCGTCTACGAGTCTCGCCCCGAGCAGCGTGAGGCGGTCTT
GGCCACGTTGCAGGTAGGGAGGGAGGAAGGAGGAGGAGGAGGAGCGTAGG
CAGGCAGGGAGGAAGGAAAGCAGTCAGGAAAAGGGGGTGAAAAGCAGGGG
AAATTGGGCAACGGCGTAGAGGAAGGAAGGAAGGAAAGGAGGGACGGAGG
AAGGGAGGCAGGGAGGGACCACCTGTCCCTTTGGAGAGATGTGATACGCA
CACATCAATCCTCTGCGGCCGTGAGCCTCATCCGGGTAGCGTCGCTTGAC
ATTTTCCTCCTTTGCCCTCCCTCCTTCCCTCCAGGCCCTCCTCAACGATG
CCGCGACTGCGTCATCCCCGTCGCTGCAGACCATGGCAGCCACCATCTAC
CTCAAAGAAGGCTCGGTCAAGGAAGCGCTGCGGGCCGTGCACCTGGGCAT
GACCCTGGAGCAGTAAGCAGGGAGGGGGGGAAGGAGGGAGGGGGCGAGGG
GGTGACAACAACATGTGTGTGTCAGCATTCAACATCTATTCCCCCCCCCC
CCCCACCCACAGGCGTGCGCTCATGACCGCCATCTACCTGCGCCTCGACC
GCCTCGACCACGTACGTCGCCCTTCCTCCCTTCCTCCCTCCCTCCCACCT
CAAATCTATCCGTCCTTGCCCACCCTCCCTCCCTCCCTCCTGCAGGCCCA
GAGGCAGCTCAAGCAAATGCAAGCCGCGGACGAGGACGCGACCCTCACCC
AAATGACGGGCGCGTGGGTGGACTTGGCACAGGTAGGGACCAAGGGAGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGAGGACGATCGAAAA
CAGATGGATATCCTTGTCGGCTACTCCTTTCTTCCAAGCATCCACCTATA
TCCTCCCCCCTTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCC
CTCCCCCCCTACCTCTTAGGGCGGCACCGGCTACCGTGACGCCCAGCTGC
TTTTTCAGGAGCTTATTGCCAAGTACGGAAGCAGCGCCTTGCTCCTCAAC
GGTAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGACATGCGAACCTCTC
AATACTGAGCGATTTCTAGGTCTGTGGTTTTTACTCATTATGAGCACTGC
TCCCTCCCTCCATCCCTCTAGGGCTGGGCGTGGCCCTCATCCACCAGGGT
CAGTACGAGGAGGCGGACAAACACCTCATGCAGGCCCTGCGCGAGGTGAG
TGAGGGTGGGGGGGAAAGAAATAGGGAGGGAGGGATCTAAAGTACAACGG
AGCGAATGGAAGGCGAAAGTGCGCTTATGGACTCGGAAGCAGATGTCAAT
AATCGTTTCCCTCCCTTCTTCCCTCCCTCCTTTCTTCCCTCCATCCCTCC
TTCCATCCCTCCCTCCATCCCTTTCTCCATCCCTCCCTTCATCCCTCCCT
CCATCCCTCCCTCCATCCCTCCCTCCCTAGGACCCCGACAAGAGCAACGC
GGACACGCTGGTGAATCTGGTGGCCACAGCCCAGCACCTGCACAAGCCCC
AAGAGACGGTGGCGAAGCTGTTAAGGTAGATGACAGAGAGGAAAGGGAGG
GACTATCCGGGAGACTTGTCCTGATAATGATTAATGATCCCACCCGATTT
CCCTCTATCCCCTCCTACCTTCCTTCCTCTCTTTCTTCCTTTTCTTTGCA
GCCAACTGCAGAAGTGCGCGCCCACCCACCCCTACGTCACCATGCTCTCC
ACCTTAGACACTGCATTTGACAGGCTGCAGGCGCAGTTTGCGTCGCACAT
CGTGCATGCATAAAGAGGGAGGAAGGGAGGGAAAGGAGGGAGGGGTGGAG
GGAGGGCACGGGGTACTGCAGAAGAGACAAGAGGCGAACAAAGAAGAAGA
AGGAAAAAAAGGTATAGACTCTCCTGAAATACAAAAACGCTACCAGAAGA
ATGAAAGGTGTAACTGTGGTCGGTGATAATTTTCTATTCCCGATTTTTAT
TTGGTATTGTTGTACGTAAGTGCTTCAATTTAATGAGGGAGCTTTGACAG
AGAAGGTAGGAGCTTCCGAGGTAAGGGTGGAGGTAGGGCGGTGGGAAGGA
GGTTCCCTCCCTGTCTGCGACTGTCAAGTGGAGAGAGGAGGAAGGAAGGT
GCAGAGGGTGGAAGGGAAGGAGGAGGGGTGGTGGAAAGCGCTTGACAGTG
TTGGGGCGGCGATGTGGGCCGCTGTGGGAGTGTAATGCTTGGCTTCGTGG
TCGACCGCGAGCTGACGTCGCTTTGTAACGTTAACATTGTTAAATTTGGG
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Coding sequence (CDS) from alignment at chr7:1282280..1285729+

>NO07G04560.1 ID=NO07G04560.1|Name=NO07G04560.1|organism=Nannochloropsis oceanica|type=CDS|length=987bp|location=Sequence derived from alignment at chr7:1282280..1285729+ (Nannochloropsis oceanica)
ATGGGCTCCCTTCCTTGCCTGCATACACCCCACTCATCCACACACATCTA
CCCCCTTAATTGCACAGCACTCACCATGGCGGAACCGGACGATCTCTACA
CGCTGCGTCAGGAATTTTACGTGGGCAACTTCCAGGCGGCCATCAACGAA
GGTAGTGCCTTGGGCCGCGTCAACCCCGACTTGGAGACGGAACGAGCCGA
ATTTGTCTACCGAGCCCACCTGGGCCTCAAGGAGTACGACGTGGTCCTTC
GTGAGGTGAAGGAAGGCGGGGACACCCCTATAGCCCTCCAGGCCGTTCGC
CTGCTAGCCGTCTACGAGTCTCGCCCCGAGCAGCGTGAGGCGGTCTTGGC
CACGTTGCAGGCCCTCCTCAACGATGCCGCGACTGCGTCATCCCCGTCGC
TGCAGACCATGGCAGCCACCATCTACCTCAAAGAAGGCTCGGTCAAGGAA
GCGCTGCGGGCCGTGCACCTGGGCATGACCCTGGAGCAGCGTGCGCTCAT
GACCGCCATCTACCTGCGCCTCGACCGCCTCGACCACGCCCAGAGGCAGC
TCAAGCAAATGCAAGCCGCGGACGAGGACGCGACCCTCACCCAAATGACG
GGCGCGTGGGTGGACTTGGCACAGGGCGGCACCGGCTACCGTGACGCCCA
GCTGCTTTTTCAGGAGCTTATTGCCAAGTACGGAAGCAGCGCCTTGCTCC
TCAACGGGCTGGGCGTGGCCCTCATCCACCAGGGTCAGTACGAGGAGGCG
GACAAACACCTCATGCAGGCCCTGCGCGAGGACCCCGACAAGAGCAACGC
GGACACGCTGGTGAATCTGGTGGCCACAGCCCAGCACCTGCACAAGCCCC
AAGAGACGGTGGCGAAGCTGTTAAGCCAACTGCAGAAGTGCGCGCCCACC
CACCCCTACGTCACCATGCTCTCCACCTTAGACACTGCATTTGACAGGCT
GCAGGCGCAGTTTGCGTCGCACATCGTGCATGCATAA
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Synonyms
Publications