NO07G04540.1, NO07G04540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G04540.1
Unique Name	NO07G04540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1407
Alignment location	chr7:1276677..1279955 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1276677..1279955 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G04540.1 vs.
Match: XP_005855429.1 (histone acetyltransferase complex component, partial [Nannochloropsis gaditana CCMP526]; EKU20936.1 histone acetyltransferase complex component, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 322.0 bits (824), Expect = 3.000e-84
Identity = 171/186 (91.94%), Postives = 181/186 (97.31%), Query Frame = 0

Query:    1 MPLRGDFDVEHDNEAELILAEMEILPDEDPAEKELKLMVVDVFNRKLDERDRRKEFVKTFNLTDYKALQNKEKRKPKDERELIAKLRVFARYQTPQEHEQFVLGILEAKRLRKRIEQLQQYRRLGIRTQADALAYENEKRKREQEQQMRKQRADASYLYETAKPGNTTKDRSSRYKKRHRGDSDMD 187
            MPLRGDFDVEHDNEAELILAEMEILPDEDPAEK+LKLMVVDVFNRKLDER++RK FVK +NL DYKALQNKEKRKPKDERELIAKLRVFARYQTPQEHEQFVLGILEAKRLRKRIEQLQQYRRLGIRTQA+ALAYENEKR+REQEQQMRKQRA+ASYLYE+AKP  +TKDRSSRYKKRHRG+SDMD
Sbjct:  291 MPLRGDFDVEHDNEAELILAEMEILPDEDPAEKQLKLMVVDVFNRKLDEREKRKAFVKEYNLIDYKALQNKEKRKPKDERELIAKLRVFARYQTPQEHEQFVLGILEAKRLRKRIEQLQQYRRLGIRTQAEALAYENEKRRREQEQQMRKQRAEASYLYESAKP--STKDRSSRYKKRHRGESDMD 474

The following BLAST results are available for this feature:

BLAST of NO07G04540.1 vs.

BLAST of NO07G04540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
XP_005855429.1	3.000e-84	91.94	histone acetyltransferase complex component, parti...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G04540	NO07G04540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04540.1	NO07G04540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04540.1.cds1	NO07G04540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds2	NO07G04540.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds3	NO07G04540.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds4	NO07G04540.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds5	NO07G04540.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds6	NO07G04540.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds7	NO07G04540.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds8	NO07G04540.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds9	NO07G04540.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds10	NO07G04540.1.cds10	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04540.1.cds11	NO07G04540.1.cds11	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1276677..1279955-
coding sequence from alignment at chr7:1276677..1279955-

mRNA sequence

>NO07G04540.1 ID=NO07G04540.1|Name=NO07G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1407bp
ATGCCCCTCCGTGGAGACTTTGACGTGGAGCATGACAACGAGGCCGAGCT
GATCCTGGCAGAGATGGAGATATTACCGGACGAGGACCCGGCGGAGAAGG
AGCTCAAGCTCATGGTCGTCGACGTCTTCAACCGCAAGCTGGACGAGCGC
GACCGGCGGAAGGAATTTGTAAAAACCTTCAATTTGACCGACTACAAGGC
CCTGCAGAACAAGGAGAAACGCAAGCCCAAGGATGAACGCGAGCTCATCG
CCAAACTCCGGGTATTCGCGCGCTACCAAACTCCGCAAGAACACGAGCAG
TTCGTCCTGGGCATCTTGGAGGCCAAGCGCCTTCGGAAGCGGATCGAGCA
GCTCCAGCAATATCGGCGTCTCGGCATTCGCACCCAGGCCGACGCCCTGG
CCTACGAGAACGAGAAGCGAAAACGGGAGCAAGAGCAGCAGATGCGCAAG
CAGCGGGCCGATGCGTCATATTTGTACGAGACGGCCAAACCCGGCAACAC
CACCAAAGACCGATCTTCGCGCTACAAGAAGAGGCACCGAGGGGACAGCG
ACATGGACAGCGCCGTGGCCGGTCTAGAAGACGCGGAGGGAGGTGGAGGA
GGAAGGGGGGGAGGGGGAGGGGAAGGAGGAGCGAAGAGGAAGGGACCAAT
GGTGCTGCCTGGCCCACTGAACATCGATGAGTATCCGGGCGTGGAGCTGC
TGTCGGGCAAAGAGAAAGAGCTCTGCGCGGCCTTGCGACTGCTGCCCAAG
CACTACCTGTACATCAAGAACCGCATCCTCCAAGAAAGTCAAGCCGCCGG
CCTCCTCCTCCCCACCACCACCACCAGCAGCAGCAGCAGCAGCAATGGCA
GCAGCGACAGAATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGA
CCTCCGTCATCGCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTA
TGACTTCATGGTCCGGGTAGGGTGGATCACGCCCCGAGCTGCCGCCTCCC
GTTCCGACGTGAAGGACATTTCTATCACTGTCAGTGGTGGCGAGGGAGGC
GCTGTCTCTGAATCTTCCTCCCTCCCTCCCTCGTCCTCTCCTCCGTCCGC
GAAGAAGGGCAGGCCGCCTGGTTCGGGGAAGGAGGCAGGGGAGGAGGAAG
GGGAGGAGAAGGGATCGGGTGGAGACAGGATTGATGTCGACGAGGCACGA
CCAGAGAAGGAGAAGGGGGGAGAGGGGGCAGGAGGAGGAGGTGGGAAGGG
AGAAAAGGGCACGTGCCCTCCCTCCACGGCAAGCCAGAGGAAATCGTCAC
GGTCCTCCCCCTCCCCCTCTCCTTCATCTCCAGCGCAGAGTGGCAAGAAG
AAGGGGGTGTCAGAAGAAGGCAAGGGCAAGGTAGAGGCTTCGGCGATGGA
GACATGA

protein sequence of NO07G04540.1

>NO07G04540.1-protein ID=NO07G04540.1-protein|Name=NO07G04540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=469bp
MPLRGDFDVEHDNEAELILAEMEILPDEDPAEKELKLMVVDVFNRKLDER
DRRKEFVKTFNLTDYKALQNKEKRKPKDERELIAKLRVFARYQTPQEHEQ
FVLGILEAKRLRKRIEQLQQYRRLGIRTQADALAYENEKRKREQEQQMRK
QRADASYLYETAKPGNTTKDRSSRYKKRHRGDSDMDSAVAGLEDAEGGGG
GRGGGGGEGGAKRKGPMVLPGPLNIDEYPGVELLSGKEKELCAALRLLPK
HYLYIKNRILQESQAAGLLLPTTTTSSSSSSNGSSDRMDGKEGEKGGQGR
PPSSLIVMDVEKKKGVYDFMVRVGWITPRAAASRSDVKDISITVSGGEGG
AVSESSSLPPSSSPPSAKKGRPPGSGKEAGEEEGEEKGSGGDRIDVDEAR
PEKEKGGEGAGGGGGKGEKGTCPPSTASQRKSSRSSPSPSPSSPAQSGKK
KGVSEEGKGKVEASAMET*

mRNA from alignment at chr7:1276677..1279955-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G04540.1 ID=NO07G04540.1|Name=NO07G04540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3279bp|location=Sequence derived from alignment at chr7:1276677..1279955- (Nannochloropsis oceanica)
ATGCCCCTCCGTGGAGACTTTGACGTGGAGCATGACAACGAGGTCCGTCA
CCCTCCCTCCCTTCCTCCCTCTTTCTCTCGACATCTACTTTCACTCCTTC
CTTCCCTGCCTCCCTCCCTCCCTCCTTCCCTCTTAACTTACGATCCTTTT
CTTCTTTCCCTCCCTCTTGACTCAACCCTCCCTCCCTCCCTCCCTCTCTC
CCTTCCTTCCTCCCTCTTTACAATCCCCTCCTCTTCTTTCCCTCCCTCCC
TCAGGCCGAGCTGATCCTGGCAGAGATGGAGATATTACCGGACGAGGACC
CGGCGGAGAAGGAGCTCAAGCTCATGGTCGTCGACGTCTTCAACCGGTGC
GTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCT
TCCCCCTTCTACCTTCCTTTGATTTTCACTTCAGTCCCAGACTCGATCGT
GACGCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCAGCAAGCTGGACGAGCGCGACCGGCGGAAGGAATTTGTAAAAACCTTC
AATTTGACCGACTACAAGGCCCTGCAGGTACGACAAACACCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTTCTGTCCTGATGCGCGTGTTTTCTCGCACT
CACATTCACCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTCCTCCCTCC
TTCCCTTCCTTTCCCCTCAGAACAAGGAGAAACGCAAGCCCAAGGATGAA
CGCGAGCTCATCGCCAAACTCCGGGTATTCGCGCGCTACCAAACTCCGCA
AGAACACGAGCAGTTCGTCCTGGTACGCCTTTCCCCTCCCTCCCTCCCTC
CCTTGTTCCCTCCCTCTCCTCTCGATGTCTCCATGAATCAACACTCATTT
TCCCTCCCTTACTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCGCC
TCCCCCTCAGGGCATCTTGGAGGCCAAGCGCCTTCGGAAGCGGATCGAGC
AGCTCCAGCAATATCGGCGTCTCGGCATTCGCACCCAGGTACCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCGTTCTGACAACCTCCCTCCCTTCCC
CTCCCCCGCCTCCTGCAGGCCGACGCCCTGGCCTACGAGAACGAGAAGCG
AAAACGGGAGCAAGAGCAGCAGATGCGCAAGCAGGTAGGGACGAAAGGAG
GGCAGAGGGGAGGGGGGGCTGGCTGGCTTAGCGGCTATCACCCGCAGCTA
AATGATATTGCTCTGCGCTTGTTTGATAGGCTTGTTCGGACCTTGAACCA
CCTCTCTTTCCCTCCCTCCCTCCCCTCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTGCGTGAGCGCGAGGAAGCTCCCTCTCTGCCTCTGC
GAAACCGTCATATGCATTCTCACCCCTCCCTCCCTCCCTCCCTCAGCGGG
CCGATGCGTCATATTTGTACGAGACGGCCAAACCCGGCAACACCACCAAA
GACCGATCTTCGCGCTACAAGAAGAGGCACCGAGGGGACAGCGACATGGA
CAGGTGAGGGAGGGAGAGAGGGAGGGAGGAAGGGAGGGGCAGATGGTTGT
TTCCTTCCCCTTTTGGAAGGTCTGTTCTATATTTCTTTCTCAAGTCTTCT
TGCCTCCCTTCCTCCCTCCCTTCCTCCTTCCCTTCCTCCTTCCCTTCCTC
CCTCCCCTCCCCCCTCCAGCGCCGTGGCCGGTCTAGAAGACGCGGAGGGA
GGTGGAGGAGGAAGGGGGGGAGGGGGAGGGGAAGGAGGAGCGAAGAGGAA
GGGACCAATGGTGCTGCCTGGCCCACTGAACATCGATGAGTATCCGGGTA
TGAAGAAGAGAGAGAGAGGGGAGGGAGGAAGGGAGGGAGGGGGGGATATA
GCCATTACCTGCAAGCACAGAGAGTCTGAAAACTTTTTCTCCTCATTTTA
TCTCATCCCTCTTTTTCTCCCCCTCTTCCTCCCTCCCTCCCTCCCTCCCT
TAGGCGTGGAGCTGCTGTCGGGCAAAGAGAAAGAGCTCTGCGCGGCCTTG
CGACTGCTGCCCAAGCACTACCTGTACATCAAGGTAGGGAGGCAGCGAGG
GAGGGGAGGAGAAAGGAGCCTAGAAGAAGGAGAAATTGAGTGCTTCCCTG
TATGAAGTCAGATCTGTCGCTATGGCTGTTCAAGACCACCTCATCATTCC
TTACTCATTCCCTCCCTCCCTTCCTTCCTTCCTTCCTCTCCCTCCTTCTC
TCTCCTCTAGAACCGCATCCTCCAAGAAAGTCAAGCCGCCGGCCTCCTCC
TCCCCACCACCACCACCAGCAGCAGCAGCAGCAGCAATGGCAGCAGCGAC
AGAATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGACCTCCGTC
ATCGCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTATGACTTCA
TGGTCCGGGTAGGGTGGATCACGCCCCGAGGTGCGTGCAGGGAGCTGCCA
GTAGGGGTGGGGGGATAGGCGCAGGGATGGTTACGTATGGGCGTATTTCT
GCTTCTCCCCCTTGTCTTCCTTAACTCCCTCTCCTCTTCCATCCTCCGCG
CTTGGGTGATGGACGGGAACTGCTGGAGGGGTGAAGTGGAAGGGCTGCCT
CGTCCTCTTTCTGACTTTCTCTGACAGTCTCTCTTTTAGCTCCTCTCGTC
TTCATCCTTCCCGCCCTCACTTCCTCCCGCCCTCCTTATCCCCCACCCTC
TCTCTTACAGCTGCCGCCTCCCGTTCCGACGTGAAGGACATTTCTATCAC
TGTCAGTGGTGGCGAGGGAGGCGCTGTCTCTGAATCTTCCTCCCTCCCTC
CCTCGTCCTCTCCTCCGTCCGCGAAGAAGGGCAGGCCGCCTGGTTCGGGG
AAGGAGGCAGGGGAGGAGGAAGGGGAGGAGAAGGGATCGGGTGGAGACAG
GATTGATGTCGACGAGGCACGACCAGAGAAGGAGAAGGGGGGAGAGGGGG
CAGGAGGAGGAGGTGGGAAGGGAGAAAAGGGCACGTGCCCTCCCTCCACG
GCAAGCCAGAGGAAATCGTCACGGTCCTCCCCCTCCCCCTCTCCTTCATC
TCCAGCGCAGAGTGGCAAGAAGAAGGGGGTGTCAGAAGAAGGCAAGGGCA
AGGTAGAGGCTTCGGCGATGGAGACATGA

Coding sequence (CDS) from alignment at chr7:1276677..1279955-

>NO07G04540.1 ID=NO07G04540.1|Name=NO07G04540.1|organism=Nannochloropsis oceanica|type=CDS|length=1407bp|location=Sequence derived from alignment at chr7:1276677..1279955- (Nannochloropsis oceanica)
ATGCCCCTCCGTGGAGACTTTGACGTGGAGCATGACAACGAGGCCGAGCT
GATCCTGGCAGAGATGGAGATATTACCGGACGAGGACCCGGCGGAGAAGG
AGCTCAAGCTCATGGTCGTCGACGTCTTCAACCGCAAGCTGGACGAGCGC
GACCGGCGGAAGGAATTTGTAAAAACCTTCAATTTGACCGACTACAAGGC
CCTGCAGAACAAGGAGAAACGCAAGCCCAAGGATGAACGCGAGCTCATCG
CCAAACTCCGGGTATTCGCGCGCTACCAAACTCCGCAAGAACACGAGCAG
TTCGTCCTGGGCATCTTGGAGGCCAAGCGCCTTCGGAAGCGGATCGAGCA
GCTCCAGCAATATCGGCGTCTCGGCATTCGCACCCAGGCCGACGCCCTGG
CCTACGAGAACGAGAAGCGAAAACGGGAGCAAGAGCAGCAGATGCGCAAG
CAGCGGGCCGATGCGTCATATTTGTACGAGACGGCCAAACCCGGCAACAC
CACCAAAGACCGATCTTCGCGCTACAAGAAGAGGCACCGAGGGGACAGCG
ACATGGACAGCGCCGTGGCCGGTCTAGAAGACGCGGAGGGAGGTGGAGGA
GGAAGGGGGGGAGGGGGAGGGGAAGGAGGAGCGAAGAGGAAGGGACCAAT
GGTGCTGCCTGGCCCACTGAACATCGATGAGTATCCGGGCGTGGAGCTGC
TGTCGGGCAAAGAGAAAGAGCTCTGCGCGGCCTTGCGACTGCTGCCCAAG
CACTACCTGTACATCAAGAACCGCATCCTCCAAGAAAGTCAAGCCGCCGG
CCTCCTCCTCCCCACCACCACCACCAGCAGCAGCAGCAGCAGCAATGGCA
GCAGCGACAGAATGGACGGAAAGGAGGGGGAGAAGGGTGGGCAGGGGCGA
CCTCCGTCATCGCTGATAGTGATGGATGTGGAGAAGAAGAAGGGGGTGTA
TGACTTCATGGTCCGGGTAGGGTGGATCACGCCCCGAGCTGCCGCCTCCC
GTTCCGACGTGAAGGACATTTCTATCACTGTCAGTGGTGGCGAGGGAGGC
GCTGTCTCTGAATCTTCCTCCCTCCCTCCCTCGTCCTCTCCTCCGTCCGC
GAAGAAGGGCAGGCCGCCTGGTTCGGGGAAGGAGGCAGGGGAGGAGGAAG
GGGAGGAGAAGGGATCGGGTGGAGACAGGATTGATGTCGACGAGGCACGA
CCAGAGAAGGAGAAGGGGGGAGAGGGGGCAGGAGGAGGAGGTGGGAAGGG
AGAAAAGGGCACGTGCCCTCCCTCCACGGCAAGCCAGAGGAAATCGTCAC
GGTCCTCCCCCTCCCCCTCTCCTTCATCTCCAGCGCAGAGTGGCAAGAAG
AAGGGGGTGTCAGAAGAAGGCAAGGGCAAGGTAGAGGCTTCGGCGATGGA
GACATGA

Synonyms

Publications