NO07G04450.1, NO07G04450.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04450.1
Unique NameNO07G04450.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length708
Alignment locationchr7:1252461..1253168 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1252461..1253168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G04450.1 vs.
Match: CBN74666.1 (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.1 bits (235), Expect = 3.000e-16
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = 0 
Query:   92 GKLRLRGMSLADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFE-------------ALSSPANTAACCLSRQLCL------ALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKAVESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC 236
            GK+ L+G+  ++   L+  L        ++  +  WLYH D  +   I E             A +S  N +   +S +  +      A+    T + GL+L D++ A DGT+KLV  +TSG   GK VE+V+IPM+RGPQ+ PRYT+CVSSQ GCAM+C FC
Sbjct:   91 GKVMLKGLLFSETQQLMERLG---EKAGRAEVLAGWLYH-DRRLIRDIAETAGGAGSAEPGGDATNSNTNRSGSLVSSKSRIGKKTRDAVREVATADGGLELEDVQLAADGTRKLVSVLTSGEGAGKKVETVIIPMLRGPQREPRYTVCVSSQVGCAMNCQFC 249
The following BLAST results are available for this feature:
BLAST of NO07G04450.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74666.13.000e-1637.42conserved unknown protein [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04450NO07G04450Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04450.1NO07G04450.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04450.1.cds1NO07G04450.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04450.1 ID=NO07G04450.1|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp
ATGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCT
ACTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACC
ATCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACT
GCCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCA
ACTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCG
TCGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCC
CTTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCC
CGAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCA
TGGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCT
GCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTAC
ATTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGA
CGAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCA
GTCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACG
CTACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCT
TCTGTTAG
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protein sequence of NO07G04450.1

>NO07G04450.1-protein ID=NO07G04450.1-protein|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=polypeptide|length=236bp
MVGTYPPPSIVGLLTLLLLPPSTIVHAFHPLLYHHGNYLTFPRATPLPAT
ALNPLVSSLSPSFASPQLPTLPLLPLPTTLLPSVERVSEAGGKLRLRGMS
LADITILLTYLNIGPNPEVKSAAVFKWLYHRDLMVHHSIFEALSSPANTA
ACCLSRQLCLALDAATTLEDGLKLIDIKHAKDGTKKLVMQITSGPAKGKA
VESVLIPMVRGPQQAPRYTLCVSSQSGCAMDCAFC*
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mRNA from alignment at chr7:1252461..1253168+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04450.1 ID=NO07G04450.1|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at chr7:1252461..1253168+ (Nannochloropsis oceanica)
ATGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCT
ACTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACC
ATCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACT
GCCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCA
ACTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCG
TCGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCC
CTTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCC
CGAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCA
TGGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCT
GCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTAC
ATTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGA
CGAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCA
GTCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACG
CTACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCT
TCTGTTAG
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Coding sequence (CDS) from alignment at chr7:1252461..1253168+

>NO07G04450.1 ID=NO07G04450.1|Name=NO07G04450.1|organism=Nannochloropsis oceanica|type=CDS|length=708bp|location=Sequence derived from alignment at chr7:1252461..1253168+ (Nannochloropsis oceanica)
ATGGTGGGGACTTACCCACCACCCTCCATCGTCGGCCTGCTTACCCTGCT
ACTCTTGCCGCCCTCCACCATCGTCCACGCTTTTCATCCTCTTCTCTACC
ATCATGGCAACTACCTGACCTTTCCACGCGCCACTCCCCTCCCCGCTACT
GCCCTCAATCCCCTGGTGTCCTCTCTCTCTCCCTCCTTCGCCTCCCCGCA
ACTGCCCACCCTCCCCCTCCTCCCCCTTCCCACAACCCTCCTCCCCTCCG
TCGAACGCGTCTCCGAAGCTGGGGGCAAGCTTCGGCTCCGCGGTATGTCC
CTTGCGGACATCACCATCCTCCTGACGTACCTCAATATTGGACCCAATCC
CGAGGTCAAGTCCGCCGCCGTCTTCAAATGGCTCTATCACAGAGACCTCA
TGGTCCATCACTCTATCTTCGAAGCCCTTTCCTCCCCAGCCAACACCGCT
GCCTGCTGCCTCTCTCGGCAGCTTTGCCTCGCCCTGGACGCTGCCACTAC
ATTGGAAGATGGCCTAAAACTAATCGACATCAAACACGCAAAAGACGGGA
CGAAGAAACTCGTGATGCAAATCACGTCCGGCCCTGCCAAGGGCAAGGCA
GTCGAGTCCGTCCTCATCCCCATGGTGCGGGGACCGCAACAGGCACCACG
CTACACGCTCTGCGTCTCCTCACAAAGTGGCTGTGCCATGGACTGTGCCT
TCTGTTAG
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Synonyms
Publications