NO07G04220.1, NO07G04220.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G04220.1
Unique Name	NO07G04220.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1751
Alignment location	chr7:1185248..1188483 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1185248..1188483 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G04220.1 vs.
Match: EWM26940.1 (hypothetical protein Naga_101321g1 [Nannochloropsis gaditana])

HSP 1 Score: 166.4 bits (420), Expect = 1.500e-37
Identity = 98/145 (67.59%), Postives = 111/145 (76.55%), Query Frame = 0

Query:    1 MPAIPSSSSAMVS---EVSSSNS-SSKLTMAKGNECLASIKSKEAAFYGVDSEDFTDRVASIMTDYVEGAMQDVKRDFCRTLAAAGGGGGKGKKGMGKEENPEAFYEETVAPRARSLVDRLTKRVDRRADAFEIYLARNIFKVPE 142
            MPA+PS  S M +   + SS N  SSKLT A   E LAS+K+KEAAFYG+DSE+FTDRV SIMTDYVEGAMQDVKRDFCR + AAG GG +GK G G  +   A YE  VAPR + L+DR +KRVDRRADAFEIYLARNIFKVPE
Sbjct:   19 MPAVPSPPSVMAAGARDTSSDNQQSSKLTTAPARETLASMKNKEAAFYGMDSEEFTDRVTSIMTDYVEGAMQDVKRDFCRAM-AAGRGGVRGKHG-GDGKEAGAVYESHVAPRVQQLIDRFSKRVDRRADAFEIYLARNIFKVPE 161

The following BLAST results are available for this feature:

BLAST of NO07G04220.1 vs.

BLAST of NO07G04220.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26940.1	1.500e-37	67.59	hypothetical protein Naga_101321g1 [Nannochloropsi...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G04220	NO07G04220	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04220.1	NO07G04220.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G04220.1.cds1	NO07G04220.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds2	NO07G04220.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds3	NO07G04220.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds4	NO07G04220.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds5	NO07G04220.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds6	NO07G04220.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds7	NO07G04220.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G04220.1.cds8	NO07G04220.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1185248..1188483+
coding sequence from alignment at chr7:1185248..1188483+

mRNA sequence

>NO07G04220.1 ID=NO07G04220.1|Name=NO07G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp
CCCAACCCTGTACTGCCAGTCACCGTACCCGGATGCTCGCTCGAAAGTCC
GCCATGCCCTGTGACACTTTCTTCATTAAGACACCCCTGCGAGACCACTC
TCACCACCAGCGCAACTTCACCGCGCCCAAGTACACGCAAGCATAAGTGC
GTGTCTCACTGACGGTGGCCATTCCCCCTGTCAAGAGGAACGACGCTGGC
TGCATACTGATTTGACAAATCATCATCACGATAACTTTTCTGCCCGCGCC
TCAAATTCCGCCTCCCTTTTTTCCCTCATTAACTCACACATCACCGCAAG
GCGCACGTAACCCGAACAAGTCATGCCAGCCATTCCGAGTTCATCATCTG
CGATGGTGTCAGAGGTCAGCAGCAGCAACAGCAGCAGCAAACTCACCATG
GCAAAAGGTAACGAATGCCTCGCAAGCATTAAGAGCAAGGAGGCGGCTTT
CTACGGCGTGGATTCGGAGGACTTCACCGATCGAGTGGCGAGCATCATGA
CCGACTACGTGGAAGGGGCCATGCAAGATGTGAAGCGGGATTTCTGCCGG
ACCCTGGCCGCGGCAGGGGGAGGGGGGGGAAAGGGGAAGAAGGGCATGGG
AAAGGAGGAGAACCCGGAAGCGTTTTACGAGGAGACGGTGGCGCCGCGTG
CGCGCTCCCTCGTGGACCGTCTGACCAAGCGTGTGGACCGCCGGGCAGAC
GCTTTTGAGATTTATTTGGCCCGGAACATCTTCAAGGTGCCCGAGACAAA
GCCGATGCGGAAGGAGGATGCCATGGATGTGGTTGACCAGCAGGTCGGGG
AGGAGGAGGAGGAGGAGGAAGACCTGACTCCTCCCCCCTCGTCGGAGCTA
CCCTCACCACAAGCTGAGGACGAAATGGATGAAGCCCTCACGGAAATGCG
AGTCAAGATTCGCACGCTCCGGAGACAGCGCAAGGCCATGGAAGCTCTCC
TGACGAAAGCCACCGTCGACCTCGACTTGACCCAAAAGGAAGCATACGCG
CTCCGCCTGCAGTTTCTGCAGACGTTGAACATGGACCCAAAGCTCGGGCC
CCTCAGTGAGGCACTAGAGGCCTTGACAGGGCAGGGAGGGCAGCTTAACG
AGCTCGTAGATGACGCAGATGCCTTGCTGCCTGCACTGGAGCGTCGCCGG
TGCCAGGACGCAGGGGAGGAGGAGGTCGGGGAGGAGGGAGGGGTGAATGC
CCTAAGCAGCAGCAGCAGTAGCAGCACTCGGGTGAAAAACGGGACGGCTG
GGGCGGGTTTGACAGACATCCGCACCAACACCAAGGAGGATCTGACAGCG
CTCATCAGGCACCTGCGGCCGGGCTCGCGCGCTTAAGCCTATAGGAAGAG
GGAGCGGCGATGAAGGAAGAAGGAAGAGTGAGGGTGTGGGAAATAAGCGC
AAGAGTGGTGGCTTGTGAGTGAAAAAAATGAAAGGGAGAAATCGAAGAAA
AAAGGGGTTGTGCTATATGTGAATGAAGGTTGGAAAAAGGAGATACAAAG
AGAGGAGGAGTAAAAGATGAGGAATATCCTAAGAGGTATGAAGATAAAGC
CGTCATGTGATAAGTCAAGACACGAAGAAGAAAATAAAAAGAATGAGAAA
AAGGAAGGTACCACAACAAAAGCATCCATAATTGAGGCGAGCGTGGCGAA
AACGAGGTAGAGGAGGAGGAGGTGGAGTAGGAGGAAGAGGCAGGAAAGGA
AGTATGAGCACCGCATGACTTTAAAAAAATAATCATGACGACGGATAGAA
A

protein sequence of NO07G04220.1

>NO07G04220.1-protein ID=NO07G04220.1-protein|Name=NO07G04220.1|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MPAIPSSSSAMVSEVSSSNSSSKLTMAKGNECLASIKSKEAAFYGVDSED
FTDRVASIMTDYVEGAMQDVKRDFCRTLAAAGGGGGKGKKGMGKEENPEA
FYEETVAPRARSLVDRLTKRVDRRADAFEIYLARNIFKVPETKPMRKEDA
MDVVDQQVGEEEEEEEDLTPPPSSELPSPQAEDEMDEALTEMRVKIRTLR
RQRKAMEALLTKATVDLDLTQKEAYALRLQFLQTLNMDPKLGPLSEALEA
LTGQGGQLNELVDDADALLPALERRRCQDAGEEEVGEEGGVNALSSSSSS
STRVKNGTAGAGLTDIRTNTKEDLTALIRHLRPGSRA*

mRNA from alignment at chr7:1185248..1188483+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G04220.1 ID=NO07G04220.1|Name=NO07G04220.1|organism=Nannochloropsis oceanica|type=mRNA|length=3236bp|location=Sequence derived from alignment at chr7:1185248..1188483+ (Nannochloropsis oceanica)
CCCAACCCTGTACTGCCAGTCACCGTACCCGGATGCTCGCTCGAAAGTCC
GCCATGCCCTGTGACACTTTCTTCATTAAGACACCCCTGCGAGACCACTC
TCACCACCAGCGCAACTTCACCGCGCCCAAGTACACGCAAGCATAAGTGC
GTGTCTCACTGACGGTGGCCATTCCCCCTGTCAAGAGGAACGACGCTGGC
TGCATACTGATTTGACAAATCATCATCACGATAACTTTTCTGCCCGCGCC
TCAAATTCCGCCTCCCTTTTTTCCCTCATTAACTCACACATCACCGCAAG
GCGCACGTAACCCGAACAAGTCATGCCAGCCATTCCGAGTTCATCATCTG
CGATGGTGTCAGAGGTCAGCAGCAGCAACAGCAGCAGCAAACTCACCATG
GCAAAAGGTAACGAATGCCTCGCAAGCATTAAGAGCAAGGAGGCGGCTTT
CTACGGCGTGGATTCGGAGGACTTCACCGATCGAGGTACGAATAGGGAGC
GGGAGTGAAGAGGAGAGAGAAAAGGGAAGGTAGGAGGGAGGAAGGGTTGG
TGTCGGGGTCCTTGTAGCACTTGGCGTGGTGGGACTCAGAGGGCCAGTGT
AGTAGGTGATGACGGGGGGATGAAGTCTGAGGGATAAAGAGGAGGAGCCG
GAGGCAATCGTGGTATATCAACAAACGGGCAGAGACATTGTGGTGGAAAG
TTCTCCTATTAGCGCCCACAATAGCGTGCTATCTGCGTCCTTCCTTCCTT
TCAAACCCAGAAGTCTGGAACGTTTCACTCTCACCCCTCCCTCCCCTCCT
CCCATCCCTCCGTTCCTCCCTCAATTGCGCCAGTGGCGAGCATCATGACC
GACTACGTGGAAGGGGCCATGCAAGATGTGAAGCGGGATTTCTGCCGGAC
CCTGGCCGCGGCAGGGGGAGGGGGGGGAAAGGGGAAGAAGGGCATGGGAA
AGGAGGAGAACCCGGAAGCGTTTTACGAGGAGACGGTGGCGCCGGTAGGA
ATGGGGGAGGGAGGGAAGGATAGAGGGAAGGGAAGGAGGAATAACAGGGC
AACGACAGAAATCGATTCGTGGGTATTGCTGTAATGCAATCATCGCTTTG
ATACCCCGTCACTGAATTTCGTTCCCTCCCTCCCTCCCTCCCTCATTCCC
TCCCTCCTTCCTTTCGACCAGCGTGCGCGCTCCCTCGTGGACCGTCTGAC
CAAGCGTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCCGGA
ACATCTTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGTAGGGAGG
GAGGGAGGGCGGGAGGGTCGAGGGAGTGAAGAAGACACGGTTCGGTCATC
ATTCCACGAAAAGGTGCTTTTTCCCTCTGCTGGACGCTCAGTAATCACTT
TTCCTTCCCTTCCTCCCCCCTTGCCTCGCCCTTGCCCCGTCGTCAGGATG
CCATGGATGTGGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAA
GACCTGACTCCTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGA
CGAAATGGATGAAGCCCTCACGGAAATGCGAGTCAAGATTCGCACGGTAT
GTCCCTCCCTTCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCCCC
CCCTCCCTTCCTCCCCCCCTCTCTTCCTCCCTCCCTCCCTCACTCACTCA
CTCATTCACTCACTCTCACACACACTCCTTCCCCCCCCTGTGTTTCCATT
GACTTGCCATTTATTCCTTTCCCTCCGTCCCGCCCTCCCTCCCATTGACT
CGCCCTTTATTCTTCTCCCTCTCTCCCGCCCTCCCTCCCTCCCTCTCTCC
CTCTCTCCAGCTCCGGAGACAGCGCAAGGCCATGGAAGCTCTCCTGACGA
AAGCCACCGTCGACCTCGACTTGACCCAAGTACAGAGGGAGGAAGAGAGG
GAGGGAGGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
CATACCGTGCGGATCTTGACCCAAGTATGACCCCAAGTACAGAGGGAGGG
AGAGAGGGATGGAGGGAGGGAGAGAGAGTTGGAGAACGGCAGCTTTTCCT
GCATGCACGCGTCTTACGTGGTTGATAACCCCTCCCTCCCTCCCTCCCTC
CCTCACAGAAGGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGACGTTG
AACATGGACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCCTTGAC
AGGGCAGGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGGTAAGT
GCAGGGGGAGGGAAGAAGGGAGGGAGAGGGGGAGGGAGGGAGGGACGGAT
GGACGGACAGAGGGCAGATGAACGAGGGGAAAAGAAGCGCCTTTTTCATT
TATGCCTTGATGTTATTCGTGGACTGTCTTCGCTGAGATACACGCACGCC
CTCTTCCTCTCCCTTAATCCCTCTAGCCTTGCTGCCTGCACTGGAGCGTC
GCCGGTGCCAGGACGCAGGGGAGGAGGAGGTCGGGGAGGAGGGAGGGGTG
AATGCCCTAAGCAGCAGCAGCAGTAGCAGCACTCGGGTGAAAAACGGGAC
GGCTGGGGCGGGTTTGACAGACATCCGCACCAACACCAAGGAGGATCTGA
CAGCGCTCATCAGGTAGGGAGAGGAGGAGGGACGGAGGGGTAATAGTCAA
CTTCGCTGTACACGTGACTTTATACTATGCCAACACTGCACTATTCGTGG
CGTGGTAATGGTCATGTCGCACTACACAATTAATCTTGAACAGGCACCTG
CGGCCGGGCTCGCGCGCTTAAGCCTATAGGAAGAGGGAGCGGCGATGAAG
GAAGAAGGAAGAGTGAGGGTGTGGGAAATAAGCGCAAGAGTGGTGGCTTG
TGAGTGAAAAAAATGAAAGGGAGAAATCGAAGAAAAAAGGGGTTGTGCTA
TATGTGAATGAAGGTTGGAAAAAGGAGATACAAAGAGAGGAGGAGTAAAA
GATGAGGAATATCCTAAGAGGTATGAAGATAAAGCCGTCATGTGATAAGT
CAAGACACGAAGAAGAAAATAAAAAGAATGAGAAAAAGGAAGGTACCACA
ACAAAAGCATCCATAATTGAGGCGAGCGTGGCGAAAACGAGGTAGAGGAG
GAGGAGGTGGAGTAGGAGGAAGAGGCAGGAAAGGAAGTATGAGCACCGCA
TGACTTTAAAAAAATAATCATGACGACGGATAGAAA

Coding sequence (CDS) from alignment at chr7:1185248..1188483+

>NO07G04220.1 ID=NO07G04220.1|Name=NO07G04220.1|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at chr7:1185248..1188483+ (Nannochloropsis oceanica)
ATGCCAGCCATTCCGAGTTCATCATCTGCGATGGTGTCAGAGGTCAGCAG
CAGCAACAGCAGCAGCAAACTCACCATGGCAAAAGGTAACGAATGCCTCG
CAAGCATTAAGAGCAAGGAGGCGGCTTTCTACGGCGTGGATTCGGAGGAC
TTCACCGATCGAGTGGCGAGCATCATGACCGACTACGTGGAAGGGGCCAT
GCAAGATGTGAAGCGGGATTTCTGCCGGACCCTGGCCGCGGCAGGGGGAG
GGGGGGGAAAGGGGAAGAAGGGCATGGGAAAGGAGGAGAACCCGGAAGCG
TTTTACGAGGAGACGGTGGCGCCGCGTGCGCGCTCCCTCGTGGACCGTCT
GACCAAGCGTGTGGACCGCCGGGCAGACGCTTTTGAGATTTATTTGGCCC
GGAACATCTTCAAGGTGCCCGAGACAAAGCCGATGCGGAAGGAGGATGCC
ATGGATGTGGTTGACCAGCAGGTCGGGGAGGAGGAGGAGGAGGAGGAAGA
CCTGACTCCTCCCCCCTCGTCGGAGCTACCCTCACCACAAGCTGAGGACG
AAATGGATGAAGCCCTCACGGAAATGCGAGTCAAGATTCGCACGCTCCGG
AGACAGCGCAAGGCCATGGAAGCTCTCCTGACGAAAGCCACCGTCGACCT
CGACTTGACCCAAAAGGAAGCATACGCGCTCCGCCTGCAGTTTCTGCAGA
CGTTGAACATGGACCCAAAGCTCGGGCCCCTCAGTGAGGCACTAGAGGCC
TTGACAGGGCAGGGAGGGCAGCTTAACGAGCTCGTAGATGACGCAGATGC
CTTGCTGCCTGCACTGGAGCGTCGCCGGTGCCAGGACGCAGGGGAGGAGG
AGGTCGGGGAGGAGGGAGGGGTGAATGCCCTAAGCAGCAGCAGCAGTAGC
AGCACTCGGGTGAAAAACGGGACGGCTGGGGCGGGTTTGACAGACATCCG
CACCAACACCAAGGAGGATCTGACAGCGCTCATCAGGCACCTGCGGCCGG
GCTCGCGCGCTTAA

Synonyms

Publications