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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1161807..1163727 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G04180.2 vs.
Match: EWM26945.1 (hypothetical protein Naga_101205g2 [Nannochloropsis gaditana]) HSP 1 Score: 129.8 bits (325), Expect = 1.700e-26 Identity = 59/111 (53.15%), Postives = 83/111 (74.77%), Query Frame = 0
Query: 159 AIYWCQRKRPWSALIYGLIVIVATLLGIPTMPFEIAAGFIFGLGVSFLILTVAKPIGVVGCLLLGRYFLHSYASKLTAESEEFRGLLVALEWRPWRLLLLLRMALMPGVVK 270
A WCQ ++PWS ++ G I++ A +LG PTMP E+ AG +FG GVS L+LTV+KP+G V C +L R+ LHS A++L + +++F L VA + RPWRL+LLLR+A MPGV+K
Sbjct: 153 AARWCQERQPWSIILNGCIIVGANILGFPTMPIEVLAGLMFGFGVSTLMLTVSKPVGAVLCAMLSRHLLHSCAARLVSSNQDFTALRVAFKKRPWRLMLLLRLAFMPGVIK 263
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G04180.2 ID=NO07G04180.2|Name=NO07G04180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp ACAGGCATCTCTTGGGTTCGTCTCGTCACGCTTGCTGACCCTCCCCACCT GTGCCGACTCCCACCTCGACAAAATGATGCCGACACAAACACCCATGCAG TCATCACAATCGCATCGTACCGCGCCGCCTGCGCCCACCCGCCTCGTCTC CATCTCCCTATCATCCGGCATCGGAGATGGCGGGGACAAGACAGAAGAGA CCTGGGTAGAGCAAACGAAGTACGAAGGGGGCAAGTCAGTAGGAGACATC TCCGCTCTCCAGATAGAGGAACCCGACGCTGCTGCGGCTGCGGCTAGGAC ACCCCGTCCGCGGTGGCTTTCCCTTTTGTTGTTAGGTTTGGGTATCATCA TCCTCCTCTCGGTGGTGGGCGCATTAATAGCGAGCTTCCACAATGAAATC CTGGACGGTAAGCAAATAGGGGGAAAGGAAGGGGAGAGGGGGAGGAGGGG GGGCGATGGTTCATCTTTGATTTTAGAGCTCCTGCCGTTTTGGCATGCTC ATCCCCTCCTTTTCCTTCTTTCACGTCATTTCCTCCTTCCCCCTCTAGCC ATATACTGGTGTCAACGGAAGCGGCCTTGGTCGGCTCTTATATATGGGCT CATTGTCATTGTTGCCACGCTGCTCGGCATTCCCACCATGCCCTTTGAGA TTGCGGCCGGATTTATCTTCGGCCTGGGGGTCTCTTTCCTCATACTGACG GTGGCCAAGCCTATAGGAGTAGTTGGATGCCTGCTGCTCGGAAGATATTT CCTTCATTCCTACGCCTCGAAACTCACTGCCGAAAGCGAAGAATTTCGGG GTTTGTTGGTCGCGCTGGAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTA CGCATGGCCCTGATGCCGGGGGTGGTCAAGAACTACGGAGTCGCCCTGCT TCCCTCCCTCCCCATCCTTACCGTCTTCCTTTGTGCCTTCCTCGGTGATA TGCCGTACTCCTTGCTCTGGTCGTTCGTGGGCAGTCGGGGAGCAAGCCTC GTGGGAATGCTGGAGGGGGAAATGGCGCGAACGCCGGTAGAGACTGCCTT GTCGTTGCTAGGAATCATTTTCCTGGTCCTGCTGGTGGCAGGGGTCCGGC ACACAGTCCAGGGGGCAGTGGAGGCGTCAAAGCGAGAGGCCGAGGAGAGC AAGGACGAGTTCCAGTACGACGAACGAGTGTAGATACAATACATAGGCG back to topprotein sequence of NO07G04180.2 >NO07G04180.2-protein ID=NO07G04180.2-protein|Name=NO07G04180.2|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp MMPTQTPMQSSQSHRTAPPAPTRLVSISLSSGIGDGGDKTEETWVEQTKY EGGKSVGDISALQIEEPDAAAAAARTPRPRWLSLLLLGLGIIILLSVVGA LIASFHNEILDGKQIGGKEGERGRRGGDGSSLILELLPFWHAHPLLFLLS RHFLLPPLAIYWCQRKRPWSALIYGLIVIVATLLGIPTMPFEIAAGFIFG LGVSFLILTVAKPIGVVGCLLLGRYFLHSYASKLTAESEEFRGLLVALEW RPWRLLLLLRMALMPGVVKNYGVALLPSLPILTVFLCAFLGDMPYSLLWS FVGSRGASLVGMLEGEMARTPVETALSLLGIIFLVLLVAGVRHTVQGAVE ASKREAEESKDEFQYDERV* back to topmRNA from alignment at chr7:1161807..1163727+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G04180.2 ID=NO07G04180.2|Name=NO07G04180.2|organism=Nannochloropsis oceanica|type=mRNA|length=1921bp|location=Sequence derived from alignment at chr7:1161807..1163727+ (Nannochloropsis oceanica) ACAGGCATCTCTTGGGTTCGTCTCGTCACGCTTGCTGACCCTCCCCACCT
GTGCCGACTCCCACCTCGACAAAATGATGCCGACACAAACACCCATGCAG
TCATCACAATCGCATCGTACCGCGCCGCCTGCGCCCACCCGCCTCGTCTC
CATCTCCCTATCATCCGGCATCGGAGATGGCGGGGACAAGACAGAAGAGA
CCTGGGTAGAGCAAACGAAGTACGAAGGGGGCAAGTCAGTAGGAGACATC
TCCGCTCTCCAGATAGAGGAACCCGACGCTGCTGCGGCTGCGGCTAGGAC
ACCCCGTCCGCGGTGGCTTTCCCTTTTGTTGTTAGGTTTGGGTATCATCA
TCCTCCTCTCGGTGGTGGGCGCATTAATAGCGAGCTTCCACAATGAAATC
CTGGACGGTAAGCAAATAGGGGGAAAGGAAGGGGAGAGGGGGAGGAGGGG
GGGCGATGGTTCATCTTTGATTTTAGAGCTCCTGCCGTTTTGGCATGCTC
ATCCCCTCCTTTTCCTTCTTTCACGTCATTTCCTCCTTCCCCCTCTAGCC
ATATACTGGTGTCAACGGAAGCGGCCTTGGTCGGCTCTTATATATGGGCT
CATTGTCATTGTTGGTACGTGTCCTTGTCCTCGTCCTCGTATAAATCGTC
GCGGTGGTCACTTGATCGAGGCGCACAATTCTTTGTTCCTTCCCTCCTTG
CTCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCTTCC
TTCCTTCCTTCCTCTTTCCCGTCATTGCCTCATTCGACTTCTCTGTCTAC
ATGGCCATCTCCGCCTTCCCTCCCTTCCTTCCTCCGTCCCCTCCCTCCCA
GCCACGCTGCTCGGCATTCCCACCATGCCCTTTGAGATTGCGGCCGGATT
TATCTTCGGCCTGGGGGTCTCTTTCCTCATACTGACGGTGGCCAAGCCTA
TAGGAGTAGTTGGATGCCTGCTGCTCGGAAGGTTAGGAAGGGGGGGAGGG
AGGGTAGGAGGACGGCTGGATGGGACACAGGAATGGAGTGTTGGAAAGAC
AAGCTTTACTTGACCCTACTGCCCTCTCTAACTAGCTTCCCCTCCCTCAG
CACCTTCCTCATCCCCCGTCATTTTGCATTTTTGAACATTTTTCTCTAAA
CTCATCGTCCAACCCACCCTCTCTCGCTCCCTCAGATATTTCCTTCATTC
CTACGCCTCGAAACTCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGG
TCGCGCTGGAGTGGCGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCC
CTGATGCCGGGGGTGGTCAAGAACTACGGTGAGGAGGGAGGGAAGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAA
GGAGGTGGTAGACGGAGGGGGCCCGAGAAGCTGACATTGCCCTCCCTCCC
TCCCTCCCTCAGGAGTCGCCCTGCTTCCCTCCCTCCCCATCCTTACCGTC
TTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTGCTCTGGTCGTT
CGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGAGGGGGAAATGG
CGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGTAGGTAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGATGAAAGAGGGAGGAG
GGAAGGACGGGAGACTGCGCGAGATGTAGGAAATTAATGTTATCCCCCTG
CGCCCTCCCTCCTTCCCCCCTCCCTTCTTGCAGGAATCATTTTCCTGGTC
CTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGGGCAGTGGAGGCGTC
AAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCAGTACGACGAACGAG
TGTAGATACAATACATAGGCG back to topCoding sequence (CDS) from alignment at chr7:1161807..1163727+ >NO07G04180.2 ID=NO07G04180.2|Name=NO07G04180.2|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr7:1161807..1163727+ (Nannochloropsis oceanica) ATGATGCCGACACAAACACCCATGCAGTCATCACAATCGCATCGTACCGC GCCGCCTGCGCCCACCCGCCTCGTCTCCATCTCCCTATCATCCGGCATCG GAGATGGCGGGGACAAGACAGAAGAGACCTGGGTAGAGCAAACGAAGTAC GAAGGGGGCAAGTCAGTAGGAGACATCTCCGCTCTCCAGATAGAGGAACC CGACGCTGCTGCGGCTGCGGCTAGGACACCCCGTCCGCGGTGGCTTTCCC TTTTGTTGTTAGGTTTGGGTATCATCATCCTCCTCTCGGTGGTGGGCGCA TTAATAGCGAGCTTCCACAATGAAATCCTGGACGGTAAGCAAATAGGGGG AAAGGAAGGGGAGAGGGGGAGGAGGGGGGGCGATGGTTCATCTTTGATTT TAGAGCTCCTGCCGTTTTGGCATGCTCATCCCCTCCTTTTCCTTCTTTCA CGTCATTTCCTCCTTCCCCCTCTAGCCATATACTGGTGTCAACGGAAGCG GCCTTGGTCGGCTCTTATATATGGGCTCATTGTCATTGTTGCCACGCTGC TCGGCATTCCCACCATGCCCTTTGAGATTGCGGCCGGATTTATCTTCGGC CTGGGGGTCTCTTTCCTCATACTGACGGTGGCCAAGCCTATAGGAGTAGT TGGATGCCTGCTGCTCGGAAGATATTTCCTTCATTCCTACGCCTCGAAAC TCACTGCCGAAAGCGAAGAATTTCGGGGTTTGTTGGTCGCGCTGGAGTGG CGCCCGTGGCGGCTGCTGTTGCTGTTACGCATGGCCCTGATGCCGGGGGT GGTCAAGAACTACGGAGTCGCCCTGCTTCCCTCCCTCCCCATCCTTACCG TCTTCCTTTGTGCCTTCCTCGGTGATATGCCGTACTCCTTGCTCTGGTCG TTCGTGGGCAGTCGGGGAGCAAGCCTCGTGGGAATGCTGGAGGGGGAAAT GGCGCGAACGCCGGTAGAGACTGCCTTGTCGTTGCTAGGAATCATTTTCC TGGTCCTGCTGGTGGCAGGGGTCCGGCACACAGTCCAGGGGGCAGTGGAG GCGTCAAAGCGAGAGGCCGAGGAGAGCAAGGACGAGTTCCAGTACGACGA ACGAGTGTAG back to top
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