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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1135084..1137614 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G04080.1 vs.
Match: XP_005853883.1 (hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526]; EKU22480.1 hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 193.4 bits (490), Expect = 1.800e-45 Identity = 93/141 (65.96%), Postives = 117/141 (82.98%), Query Frame = 0
Query: 36 VQFPTLGQGSTFSVRLHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRGRV--LSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITLTQKIEGESIDLLSKEGDVLLNKAR 175
V+FP LGQGS+FSVRLHRVPAQ++IT+ WIDHT+L I PP+APALDVQVL G G +G A + LS+SDAK+LLPPDALKY++G YH+H T+PEK+H+LQ HLSQSPGTI+++ K+EGE ID+LSK+GDV +NK R
Sbjct: 2 VKFPNLGQGSSFSVRLHRVPAQISITSGWIDHTELRIDTPPHAPALDVQVLR-GNGAKGTADEESTLSTLSVSDAKILLPPDALKYMEGKYHVHITVPEKLHSLQAHLSQSPGTISVSTKVEGEGIDILSKQGDVHINKIR 141
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG TCGCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCACCTTCAGTGTGCGC CTGCACCGGGTTCCTGCCCAAGTCACTATCACTACTGCGTGGATTGATCA TACAAAGCTGCTGATTGCTGCACCACCTAACGCCCCAGCACTGGACGTGC AGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGGCTACTGGCCGGGGA CGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTGCCGCCCGACGCACT GAAGTACCTAGACGGCCACTACCACATTCACGCCACCATTCCAGAAAAGG TGCATACGTTGCAGGTCCATCTCTCACAATCTCCGGGTACTATCACACTC ACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTGAGTAAAGAGGGCGA TGTGCTGTTAAACAAGGCTAGGGGGGTTAAACTCGATGTGTCCGCCGAGA AAGGCACGGTCAAGGTGGCCAAATGGGTGGAGGGTGATCTGAGTGTTCGG GCCGGGAGGTTAAGGGCCCGGATGATCAAAGGCCATCGCGTGCGCTTGCA GGTTCGAGGAGGAAGGGAAAGAGGGAGGGAAGGAGGGCCGCCCTTGGTTG TCGAAGCCTTGTACGGGCGGCAGGCGTCGGTGCTCTGCACCGCCCCCCCC CCTCCCTCCCTCCCTCCCACCTTTTCGTTGGCGGGGCACGAAAGAAAGGA GGAAAGTGGGAAAAAAGGAGCGTCAGCCCTTACACTGGATATTAATCGCT CTCACGGCGCTTTGAAAGTGGTGGCAACGGGGGGAGGCGTCCGGTTGGGA GGGGTCAACGGCTCAGCGATCGTTCAGACTGGAGGAGGGGAAGGGGGAGG GGCAGGACGTGAGGGAGGAATCGACGTCCGGTTCGAAGCGCTGGAGCCGG GCTGCATGAACGTGCTGGCGACGCAGGGAGGGCCCATCAACCTACTGGTG GCTCCCGAGGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTC ATCGTTCTTGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAG GCCTGGAGGTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACT GGGAAAGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACA GCAGCAGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTG TTGGGAAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTC TTCCACGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGC GTCACTTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGA CGCTGAGCTGGATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATC GACTACTCGCCTCAAGGCCAACGGGTGGGGAATAGCAAGTGA back to topprotein sequence of NO07G04080.1 >NO07G04080.1-protein ID=NO07G04080.1-protein|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp MQLLLLKRQLTTRQLLLLSRRALSDSPSPPPPPVAVQFPTLGQGSTFSVR LHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRG RVLSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITL TQKIEGESIDLLSKEGDVLLNKARGVKLDVSAEKGTVKVAKWVEGDLSVR AGRLRARMIKGHRVRLQVRGGRERGREGGPPLVVEALYGRQASVLCTAPP PPSLPPTFSLAGHERKEESGKKGASALTLDINRSHGALKVVATGGGVRLG GVNGSAIVQTGGGEGGGAGREGGIDVRFEALEPGCMNVLATQGGPINLLV APEVRATLRVEGKTAVSSFLAAVEGEGGREAVQGLEVGRRSEGLVEGRLT GKAPEPSRKRQHQQQQQQQEEEGKEGGRHGRVGVGKIDLKGAQDQALKAF FHESGGEEGREGGKEVASLLVRTQGEGGTLQVKTLSWMDAIKRDFGLEHI DYSPQGQRVGNSK* back to topmRNA from alignment at chr7:1135084..1137614+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2531bp|location=Sequence derived from alignment at chr7:1135084..1137614+ (Nannochloropsis oceanica) ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT
CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG
TCGCAGGTGGGTACGTGGCGTTTATCGTCACCTTCCCCAATGGCACTTGT
CGCACCCTTGTAACACGTCACGTGCTCCCTGTCCCTGTTCTCCCCCCTGT
CTAACCCTTTCCAATTGACCGCAAGATCAAACCCTGCATTTCAGTCCTGT
GCTCGTGTGTGTGTGGCCTCTCACCCATCCCACCAACCTCCCCCCTCCCC
CCTCTTCTCTCCCACACCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCA
CCTTCAGTGTGCGCCTGCACCGGGTTCCTGCCCAAGTCACTATCACTACT
GCGTGGATTGATCATACAAAGCTGCTGATTGCTGCACCACCTAACGCCCC
AGCACTGGACGTGCAGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGG
CTACTGGCCGGGGACGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTG
CCGCCCGACGCACTGAAGTACCTAGACGGTATGTATGCCTTGCATCTCTG
GTCCCGCTTCACAGTTGCAACCCCTACCCATACATCCTTCCTCCATCCTC
CCTCCCTCCCCTCCCTCCTCCCCTCTAGGCCACTACCACATTCACGCCAC
CATTCCAGAAAAGGTGCATACGTTGCAGGTCCATCTCTCACAATCTCCGG
GTACTATCACACTCACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTG
AGTAAAGAGGGCGATGTGCTGTTAAACAAGGCTAGGGGTGAGGGCGGAGG
GAGAAAGGGATGGAGGGATGGAGGGAGGGAGGAGCAGGAAAAATGATGTT
TGTCAATAGATCAGGGGACGATCTAAAAAGACGCTCATTACCACTCCACT
AATAACATGATAAATCTAACAAACAAAAACCTCTGCAAATAATAGGGGTT
AAACTCGATGTGTCCGCCGAGAAAGGCACGGTCAAGGTGGCCAAATGGGT
GGAGGGTGATCTGAGTGTTCGGGCCGGGAGGTTAAGGGCCCGGATGATCA
AAGGCCATCGCGTGCGCTTGCAGGTTCGAGGAGGAAGGGAAAGAGGGAGG
GAAGGAGGGCCGCCCTTGGTTGTCGAAGCCTTGTACGGGCGGCAGGCGTC
GGTGCTCTGCACCGCCCCCCCCCCTCCCTCCCTCCCTCCCACCTTTTCGT
TGGCGGGGCACGAAAGAAAGGAGGAAAGTGGGAAAAAAGGAGCGTCAGCC
CTTACACTGGATATTAATCGCTCTCACGGCGCTTTGAAAGTGGTGGCAAC
GGGGGGAGGCGTCCGGTTGGGAGGGGTCAACGGCTCAGCGATCGTTCAGA
CTGGAGGAGGGGAAGGGGGAGGGGCAGGACGTGAGGGAGGAATCGACGTC
CGGTTCGAAGCGCTGGAGCCGGGCTGCATGAACGTGCTGGCGACGCAGGG
AGGGCCCATCAACCTACTGGTGGTGCGTTGGAGAAGCTTTTACACTTCCT
CCCCCCCTCCCCCCTCCCCTCTCATCTCTATTAGCTAGGCCAGCTTACCT
CCTTCTCCCTCTCTTCCTTCTCCCTTCCCTTTTTTCTCTTAGGCTCCCGA
GGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTCATCGTTCT
TGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAGGCCTGGAG
GTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACTGGTGCGTC
GCTCTAAAAGGGAGGGAGGGGGAGAGGGAGGGGGGGAGGGAGGGAGGGAG
GGAGGAAAAGCGGAGAGGCCGATGCTCCCTGGCTTCAGGGGGGCAATTGA
AAAATAGGTTGTTTGATCTTCTTTTTCTAACGTGGTGTTCTTACAGGGAA
AGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACAGCAGC
AGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTGTTGGG
AAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTCTTCCA
CGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGCGTCAC
TTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGTACGTA
TAAATTGAAGTGAAGATAGGCACGGAACAGGGAGGTGGGGAGGGAGGAGG
AGGAGGAGGGAGGTTTGAGATAGCGAGTGTGCTTGTTCACACCAGACGTT
GGCCTGGCCTTTTTCAGGCGGCGACTTTCAGATTCTACCAATACCTACTT
TCTGTAGTATTGAGATATATTTGTCATCTCTTGTCATCTTCTTTCGCTTC
CTCTCTCCCTTCCTCCCTCCTTCCCTAACAATCACAGGACGCTGAGCTGG
ATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATCGACTACTCGCC
TCAAGGCCAACGGGTGGGGAATAGCAAGTGA back to topCoding sequence (CDS) from alignment at chr7:1135084..1137614+ >NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr7:1135084..1137614+ (Nannochloropsis oceanica) ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG TCGCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCACCTTCAGTGTGCGC CTGCACCGGGTTCCTGCCCAAGTCACTATCACTACTGCGTGGATTGATCA TACAAAGCTGCTGATTGCTGCACCACCTAACGCCCCAGCACTGGACGTGC AGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGGCTACTGGCCGGGGA CGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTGCCGCCCGACGCACT GAAGTACCTAGACGGCCACTACCACATTCACGCCACCATTCCAGAAAAGG TGCATACGTTGCAGGTCCATCTCTCACAATCTCCGGGTACTATCACACTC ACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTGAGTAAAGAGGGCGA TGTGCTGTTAAACAAGGCTAGGGGGGTTAAACTCGATGTGTCCGCCGAGA AAGGCACGGTCAAGGTGGCCAAATGGGTGGAGGGTGATCTGAGTGTTCGG GCCGGGAGGTTAAGGGCCCGGATGATCAAAGGCCATCGCGTGCGCTTGCA GGTTCGAGGAGGAAGGGAAAGAGGGAGGGAAGGAGGGCCGCCCTTGGTTG TCGAAGCCTTGTACGGGCGGCAGGCGTCGGTGCTCTGCACCGCCCCCCCC CCTCCCTCCCTCCCTCCCACCTTTTCGTTGGCGGGGCACGAAAGAAAGGA GGAAAGTGGGAAAAAAGGAGCGTCAGCCCTTACACTGGATATTAATCGCT CTCACGGCGCTTTGAAAGTGGTGGCAACGGGGGGAGGCGTCCGGTTGGGA GGGGTCAACGGCTCAGCGATCGTTCAGACTGGAGGAGGGGAAGGGGGAGG GGCAGGACGTGAGGGAGGAATCGACGTCCGGTTCGAAGCGCTGGAGCCGG GCTGCATGAACGTGCTGGCGACGCAGGGAGGGCCCATCAACCTACTGGTG GCTCCCGAGGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTC ATCGTTCTTGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAG GCCTGGAGGTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACT GGGAAAGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACA GCAGCAGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTG TTGGGAAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTC TTCCACGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGC GTCACTTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGA CGCTGAGCTGGATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATC GACTACTCGCCTCAAGGCCAACGGGTGGGGAATAGCAAGTGA back to top
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