NO07G04080.1, NO07G04080.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04080.1
Unique NameNO07G04080.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1542
Alignment locationchr7:1135084..1137614 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1135084..1137614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G04080.1 vs.
Match: XP_005853883.1 (hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526]; EKU22480.1 hypothetical protein NGA_0471900, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 193.4 bits (490), Expect = 1.800e-45
Identity = 93/141 (65.96%), Postives = 117/141 (82.98%), Query Frame = 0
Query:   36 VQFPTLGQGSTFSVRLHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRGRV--LSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITLTQKIEGESIDLLSKEGDVLLNKAR 175
            V+FP LGQGS+FSVRLHRVPAQ++IT+ WIDHT+L I  PP+APALDVQVL  G G +G A     +  LS+SDAK+LLPPDALKY++G YH+H T+PEK+H+LQ HLSQSPGTI+++ K+EGE ID+LSK+GDV +NK R
Sbjct:    2 VKFPNLGQGSSFSVRLHRVPAQISITSGWIDHTELRIDTPPHAPALDVQVLR-GNGAKGTADEESTLSTLSVSDAKILLPPDALKYMEGKYHVHITVPEKLHSLQAHLSQSPGTISVSTKVEGEGIDILSKQGDVHINKIR 141          
The following BLAST results are available for this feature:
BLAST of NO07G04080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853883.11.800e-4565.96hypothetical protein NGA_0471900, partial [Nannoch... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04080NO07G04080Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04080.1NO07G04080.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04080.1.cds1NO07G04080.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds2NO07G04080.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds3NO07G04080.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds4NO07G04080.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds5NO07G04080.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds6NO07G04080.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04080.1.cds7NO07G04080.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1542bp
ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT
CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG
TCGCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCACCTTCAGTGTGCGC
CTGCACCGGGTTCCTGCCCAAGTCACTATCACTACTGCGTGGATTGATCA
TACAAAGCTGCTGATTGCTGCACCACCTAACGCCCCAGCACTGGACGTGC
AGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGGCTACTGGCCGGGGA
CGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTGCCGCCCGACGCACT
GAAGTACCTAGACGGCCACTACCACATTCACGCCACCATTCCAGAAAAGG
TGCATACGTTGCAGGTCCATCTCTCACAATCTCCGGGTACTATCACACTC
ACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTGAGTAAAGAGGGCGA
TGTGCTGTTAAACAAGGCTAGGGGGGTTAAACTCGATGTGTCCGCCGAGA
AAGGCACGGTCAAGGTGGCCAAATGGGTGGAGGGTGATCTGAGTGTTCGG
GCCGGGAGGTTAAGGGCCCGGATGATCAAAGGCCATCGCGTGCGCTTGCA
GGTTCGAGGAGGAAGGGAAAGAGGGAGGGAAGGAGGGCCGCCCTTGGTTG
TCGAAGCCTTGTACGGGCGGCAGGCGTCGGTGCTCTGCACCGCCCCCCCC
CCTCCCTCCCTCCCTCCCACCTTTTCGTTGGCGGGGCACGAAAGAAAGGA
GGAAAGTGGGAAAAAAGGAGCGTCAGCCCTTACACTGGATATTAATCGCT
CTCACGGCGCTTTGAAAGTGGTGGCAACGGGGGGAGGCGTCCGGTTGGGA
GGGGTCAACGGCTCAGCGATCGTTCAGACTGGAGGAGGGGAAGGGGGAGG
GGCAGGACGTGAGGGAGGAATCGACGTCCGGTTCGAAGCGCTGGAGCCGG
GCTGCATGAACGTGCTGGCGACGCAGGGAGGGCCCATCAACCTACTGGTG
GCTCCCGAGGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTC
ATCGTTCTTGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAG
GCCTGGAGGTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACT
GGGAAAGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACA
GCAGCAGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTG
TTGGGAAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTC
TTCCACGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGC
GTCACTTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGA
CGCTGAGCTGGATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATC
GACTACTCGCCTCAAGGCCAACGGGTGGGGAATAGCAAGTGA
back to top

protein sequence of NO07G04080.1

>NO07G04080.1-protein ID=NO07G04080.1-protein|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=514bp
MQLLLLKRQLTTRQLLLLSRRALSDSPSPPPPPVAVQFPTLGQGSTFSVR
LHRVPAQVTITTAWIDHTKLLIAAPPNAPALDVQVLNEGEGGEGEATGRG
RVLSISDAKMLLPPDALKYLDGHYHIHATIPEKVHTLQVHLSQSPGTITL
TQKIEGESIDLLSKEGDVLLNKARGVKLDVSAEKGTVKVAKWVEGDLSVR
AGRLRARMIKGHRVRLQVRGGRERGREGGPPLVVEALYGRQASVLCTAPP
PPSLPPTFSLAGHERKEESGKKGASALTLDINRSHGALKVVATGGGVRLG
GVNGSAIVQTGGGEGGGAGREGGIDVRFEALEPGCMNVLATQGGPINLLV
APEVRATLRVEGKTAVSSFLAAVEGEGGREAVQGLEVGRRSEGLVEGRLT
GKAPEPSRKRQHQQQQQQQEEEGKEGGRHGRVGVGKIDLKGAQDQALKAF
FHESGGEEGREGGKEVASLLVRTQGEGGTLQVKTLSWMDAIKRDFGLEHI
DYSPQGQRVGNSK*
back to top

mRNA from alignment at chr7:1135084..1137614+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=mRNA|length=2531bp|location=Sequence derived from alignment at chr7:1135084..1137614+ (Nannochloropsis oceanica)
ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG TCGCAGGTGGGTACGTGGCGTTTATCGTCACCTTCCCCAATGGCACTTGT CGCACCCTTGTAACACGTCACGTGCTCCCTGTCCCTGTTCTCCCCCCTGT CTAACCCTTTCCAATTGACCGCAAGATCAAACCCTGCATTTCAGTCCTGT GCTCGTGTGTGTGTGGCCTCTCACCCATCCCACCAACCTCCCCCCTCCCC CCTCTTCTCTCCCACACCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCA CCTTCAGTGTGCGCCTGCACCGGGTTCCTGCCCAAGTCACTATCACTACT GCGTGGATTGATCATACAAAGCTGCTGATTGCTGCACCACCTAACGCCCC AGCACTGGACGTGCAGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGG CTACTGGCCGGGGACGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTG CCGCCCGACGCACTGAAGTACCTAGACGGTATGTATGCCTTGCATCTCTG GTCCCGCTTCACAGTTGCAACCCCTACCCATACATCCTTCCTCCATCCTC CCTCCCTCCCCTCCCTCCTCCCCTCTAGGCCACTACCACATTCACGCCAC CATTCCAGAAAAGGTGCATACGTTGCAGGTCCATCTCTCACAATCTCCGG GTACTATCACACTCACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTG AGTAAAGAGGGCGATGTGCTGTTAAACAAGGCTAGGGGTGAGGGCGGAGG GAGAAAGGGATGGAGGGATGGAGGGAGGGAGGAGCAGGAAAAATGATGTT TGTCAATAGATCAGGGGACGATCTAAAAAGACGCTCATTACCACTCCACT AATAACATGATAAATCTAACAAACAAAAACCTCTGCAAATAATAGGGGTT AAACTCGATGTGTCCGCCGAGAAAGGCACGGTCAAGGTGGCCAAATGGGT GGAGGGTGATCTGAGTGTTCGGGCCGGGAGGTTAAGGGCCCGGATGATCA AAGGCCATCGCGTGCGCTTGCAGGTTCGAGGAGGAAGGGAAAGAGGGAGG GAAGGAGGGCCGCCCTTGGTTGTCGAAGCCTTGTACGGGCGGCAGGCGTC GGTGCTCTGCACCGCCCCCCCCCCTCCCTCCCTCCCTCCCACCTTTTCGT TGGCGGGGCACGAAAGAAAGGAGGAAAGTGGGAAAAAAGGAGCGTCAGCC CTTACACTGGATATTAATCGCTCTCACGGCGCTTTGAAAGTGGTGGCAAC GGGGGGAGGCGTCCGGTTGGGAGGGGTCAACGGCTCAGCGATCGTTCAGA CTGGAGGAGGGGAAGGGGGAGGGGCAGGACGTGAGGGAGGAATCGACGTC CGGTTCGAAGCGCTGGAGCCGGGCTGCATGAACGTGCTGGCGACGCAGGG AGGGCCCATCAACCTACTGGTGGTGCGTTGGAGAAGCTTTTACACTTCCT CCCCCCCTCCCCCCTCCCCTCTCATCTCTATTAGCTAGGCCAGCTTACCT CCTTCTCCCTCTCTTCCTTCTCCCTTCCCTTTTTTCTCTTAGGCTCCCGA GGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTCATCGTTCT TGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAGGCCTGGAG GTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACTGGTGCGTC GCTCTAAAAGGGAGGGAGGGGGAGAGGGAGGGGGGGAGGGAGGGAGGGAG GGAGGAAAAGCGGAGAGGCCGATGCTCCCTGGCTTCAGGGGGGCAATTGA AAAATAGGTTGTTTGATCTTCTTTTTCTAACGTGGTGTTCTTACAGGGAA AGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACAGCAGC AGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTGTTGGG AAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTCTTCCA CGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGCGTCAC TTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGTACGTA TAAATTGAAGTGAAGATAGGCACGGAACAGGGAGGTGGGGAGGGAGGAGG AGGAGGAGGGAGGTTTGAGATAGCGAGTGTGCTTGTTCACACCAGACGTT GGCCTGGCCTTTTTCAGGCGGCGACTTTCAGATTCTACCAATACCTACTT TCTGTAGTATTGAGATATATTTGTCATCTCTTGTCATCTTCTTTCGCTTC CTCTCTCCCTTCCTCCCTCCTTCCCTAACAATCACAGGACGCTGAGCTGG ATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATCGACTACTCGCC TCAAGGCCAACGGGTGGGGAATAGCAAGTGA
back to top

Coding sequence (CDS) from alignment at chr7:1135084..1137614+

>NO07G04080.1 ID=NO07G04080.1|Name=NO07G04080.1|organism=Nannochloropsis oceanica|type=CDS|length=1542bp|location=Sequence derived from alignment at chr7:1135084..1137614+ (Nannochloropsis oceanica)
ATGCAGCTCCTTCTCCTCAAGCGCCAGCTGACCACGCGACAGCTCCTCCT
CCTCTCCCGCCGTGCTTTGTCCGACTCCCCTTCCCCTCCGCCTCCGCCTG
TCGCAGTTCAATTTCCCACGCTAGGCCAAGGCAGCACCTTCAGTGTGCGC
CTGCACCGGGTTCCTGCCCAAGTCACTATCACTACTGCGTGGATTGATCA
TACAAAGCTGCTGATTGCTGCACCACCTAACGCCCCAGCACTGGACGTGC
AGGTGCTCAATGAAGGCGAAGGCGGCGAGGGAGAGGCTACTGGCCGGGGA
CGCGTCCTGTCCATTTCAGACGCCAAAATGCTCTTGCCGCCCGACGCACT
GAAGTACCTAGACGGCCACTACCACATTCACGCCACCATTCCAGAAAAGG
TGCATACGTTGCAGGTCCATCTCTCACAATCTCCGGGTACTATCACACTC
ACCCAGAAGATTGAAGGGGAGAGCATCGACTTGCTGAGTAAAGAGGGCGA
TGTGCTGTTAAACAAGGCTAGGGGGGTTAAACTCGATGTGTCCGCCGAGA
AAGGCACGGTCAAGGTGGCCAAATGGGTGGAGGGTGATCTGAGTGTTCGG
GCCGGGAGGTTAAGGGCCCGGATGATCAAAGGCCATCGCGTGCGCTTGCA
GGTTCGAGGAGGAAGGGAAAGAGGGAGGGAAGGAGGGCCGCCCTTGGTTG
TCGAAGCCTTGTACGGGCGGCAGGCGTCGGTGCTCTGCACCGCCCCCCCC
CCTCCCTCCCTCCCTCCCACCTTTTCGTTGGCGGGGCACGAAAGAAAGGA
GGAAAGTGGGAAAAAAGGAGCGTCAGCCCTTACACTGGATATTAATCGCT
CTCACGGCGCTTTGAAAGTGGTGGCAACGGGGGGAGGCGTCCGGTTGGGA
GGGGTCAACGGCTCAGCGATCGTTCAGACTGGAGGAGGGGAAGGGGGAGG
GGCAGGACGTGAGGGAGGAATCGACGTCCGGTTCGAAGCGCTGGAGCCGG
GCTGCATGAACGTGCTGGCGACGCAGGGAGGGCCCATCAACCTACTGGTG
GCTCCCGAGGTCAGAGCCACCTTGAGAGTGGAGGGCAAGACAGCAGTTTC
ATCGTTCTTGGCTGCAGTGGAGGGGGAGGGAGGGAGGGAGGCTGTCCAAG
GCCTGGAGGTTGGGAGGAGAAGCGAGGGGTTGGTGGAGGGCCGGCTTACT
GGGAAAGCCCCCGAACCCTCCCGCAAGAGGCAGCATCAGCAGCAGCAACA
GCAGCAGGAGGAGGAGGGGAAGGAGGGGGGCAGGCATGGACGAGTTGGTG
TTGGGAAGATCGACCTGAAGGGCGCACAAGACCAAGCTCTCAAGGCCTTC
TTCCACGAGAGCGGGGGGGAGGAGGGGAGGGAGGGTGGAAAGGAGGTAGC
GTCACTTTTGGTGCGGACACAGGGGGAGGGAGGGACGTTGCAAGTCAAGA
CGCTGAGCTGGATGGACGCCATCAAGCGGGATTTTGGCTTGGAGCACATC
GACTACTCGCCTCAAGGCCAACGGGTGGGGAATAGCAAGTGA
back to top
Synonyms
Publications