NO07G04070.1, NO07G04070.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04070.1
Unique NameNO07G04070.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1044
Alignment locationchr7:1133851..1134894 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1133851..1134894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G04070.1 vs.
Match: XP_005853881.1 (and domain-containing protein [Nannochloropsis gaditana CCMP526]; EKU22478.1 and domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 181.0 bits (458), Expect = 6.200e-42
Identity = 112/224 (50.00%), Postives = 151/224 (67.41%), Query Frame = 0
Query:  130 MNYLVIKGDKHVAECLTRESGAVPPVDLKTIEERMNVRKALIAGEVDAAMAHIAKCDPRLLEREQGLAFTLKLQKLVEMIRRRM----EQREGGMEGEGADDDEVILSYAREELAPWGE--AEEGGGGGKGENLQALEEAMTLLVFG-TAAFGAAPGAKGGKEGRRGEEERGTGDLLDLSRRTATADRVNAAILQSQGQDSEPVLPRLLRKLRAAEDELASEMM 347
            MNY ++KG K +AE + RESG  PPVDL++IE RM +RKAL+ G+VDAA+AHI + DP LL+++Q L F L +QKL EM+R R+    E++E    G    + + IL++AR+EL   GE    +G   G+ ++L+ +EEAMTL+V G TAA   A    GG+    G +ER    LLD SRR ATADRVNA+IL+SQG D +PVL  + ++LRA E ELA EMM
Sbjct:    1 MNYFIVKGHKELAESMARESGTAPPVDLQSIEVRMRIRKALMEGDVDAAIAHIMESDPMLLKKDQDLHFALHVQKLAEMLRCRLTPPEEKKEDDTTGSETTESK-ILAFARKELT-LGEDTGTQGEKDGRSQSLKVVEEAMTLMVLGPTAAAAKATRQGGGRGVANGCKER--YGLLDFSRRAATADRVNASILRSQGHDPQPVLQSICKRLRATEAELAKEMM 220          
The following BLAST results are available for this feature:
BLAST of NO07G04070.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853881.16.200e-4250.00and domain-containing protein [Nannochloropsis gad... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04070NO07G04070Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04070.1NO07G04070.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04070.1.cds1NO07G04070.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04070.1 ID=NO07G04070.1|Name=NO07G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp
ATGCAGGGGGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGCGCAGGAA
TGAAGCCTCGCGTCTCATTTCCTCCTCTCGGCTCCGTACACACATCAACC
GCCTTGGCAATCGTCTACTCAACGAACTCGGGGCCACAGGCAACAGCAAT
AGCGGCATCACCAATAACAGCAGCAGTGATAGAAGTAGTGGTAGCAGCAG
CAGCAGCAGCAGAAGAGGTGGCAGCGTGGGTCCTTCCTCTCATCCGCCGC
AGCAGCATGACGCCCGTGACCCTCACCTCACCAACCCCGCCTCCCCCTCC
TCGGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTTACTCGCACTCAAA
ACGACGCGTCCGCAAGCGTTATATGGATCAGCTTATCATGAACTACCTCG
TAATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGACCAGGGAGTCAGGG
GCAGTGCCGCCCGTGGACTTGAAAACGATTGAGGAACGCATGAATGTACG
AAAGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATGGCGCATATCGCTA
AATGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACTGGCATTTACTTTA
AAGCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGATGGAGCAGCGGGA
GGGAGGGATGGAGGGCGAGGGTGCAGACGACGACGAGGTTATTTTGTCGT
ATGCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGAGGAGGGGGGGGGA
GGAGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGGCCATGACATTGCT
TGTCTTTGGCACGGCCGCCTTCGGTGCAGCACCCGGCGCAAAAGGAGGAA
AAGAAGGAAGAAGGGGAGAAGAAGAACGAGGAACAGGCGACTTGCTGGAC
CTTTCAAGACGGACAGCCACGGCAGACAGGGTGAATGCGGCGATTCTTCA
AAGCCAAGGCCAAGATTCCGAGCCTGTATTGCCCAGACTGTTGAGAAAAC
TGCGTGCGGCGGAGGACGAGCTGGCATCAGAGATGATGTGTTGA
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protein sequence of NO07G04070.1

>NO07G04070.1-protein ID=NO07G04070.1-protein|Name=NO07G04070.1|organism=Nannochloropsis oceanica|type=polypeptide|length=348bp
MQGEQDPGASRAPARRNEASRLISSSRLRTHINRLGNRLLNELGATGNSN
SGITNNSSSDRSSGSSSSSSRRGGSVGPSSHPPQQHDARDPHLTNPASPS
SATSPLHLPQSLYSHSKRRVRKRYMDQLIMNYLVIKGDKHVAECLTRESG
AVPPVDLKTIEERMNVRKALIAGEVDAAMAHIAKCDPRLLEREQGLAFTL
KLQKLVEMIRRRMEQREGGMEGEGADDDEVILSYAREELAPWGEAEEGGG
GGKGENLQALEEAMTLLVFGTAAFGAAPGAKGGKEGRRGEEERGTGDLLD
LSRRTATADRVNAAILQSQGQDSEPVLPRLLRKLRAAEDELASEMMC*
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mRNA from alignment at chr7:1133851..1134894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04070.1 ID=NO07G04070.1|Name=NO07G04070.1|organism=Nannochloropsis oceanica|type=mRNA|length=1044bp|location=Sequence derived from alignment at chr7:1133851..1134894- (Nannochloropsis oceanica)
ATGCAGGGGGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGCGCAGGAA TGAAGCCTCGCGTCTCATTTCCTCCTCTCGGCTCCGTACACACATCAACC GCCTTGGCAATCGTCTACTCAACGAACTCGGGGCCACAGGCAACAGCAAT AGCGGCATCACCAATAACAGCAGCAGTGATAGAAGTAGTGGTAGCAGCAG CAGCAGCAGCAGAAGAGGTGGCAGCGTGGGTCCTTCCTCTCATCCGCCGC AGCAGCATGACGCCCGTGACCCTCACCTCACCAACCCCGCCTCCCCCTCC TCGGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTTACTCGCACTCAAA ACGACGCGTCCGCAAGCGTTATATGGATCAGCTTATCATGAACTACCTCG TAATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGACCAGGGAGTCAGGG GCAGTGCCGCCCGTGGACTTGAAAACGATTGAGGAACGCATGAATGTACG AAAGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATGGCGCATATCGCTA AATGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACTGGCATTTACTTTA AAGCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGATGGAGCAGCGGGA GGGAGGGATGGAGGGCGAGGGTGCAGACGACGACGAGGTTATTTTGTCGT ATGCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGAGGAGGGGGGGGGA GGAGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGGCCATGACATTGCT TGTCTTTGGCACGGCCGCCTTCGGTGCAGCACCCGGCGCAAAAGGAGGAA AAGAAGGAAGAAGGGGAGAAGAAGAACGAGGAACAGGCGACTTGCTGGAC CTTTCAAGACGGACAGCCACGGCAGACAGGGTGAATGCGGCGATTCTTCA AAGCCAAGGCCAAGATTCCGAGCCTGTATTGCCCAGACTGTTGAGAAAAC TGCGTGCGGCGGAGGACGAGCTGGCATCAGAGATGATGTGTTGA
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Coding sequence (CDS) from alignment at chr7:1133851..1134894-

>NO07G04070.1 ID=NO07G04070.1|Name=NO07G04070.1|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at chr7:1133851..1134894- (Nannochloropsis oceanica)
ATGCAGGGGGAGCAAGACCCTGGAGCTTCGAGGGCCCCTGCGCGCAGGAA
TGAAGCCTCGCGTCTCATTTCCTCCTCTCGGCTCCGTACACACATCAACC
GCCTTGGCAATCGTCTACTCAACGAACTCGGGGCCACAGGCAACAGCAAT
AGCGGCATCACCAATAACAGCAGCAGTGATAGAAGTAGTGGTAGCAGCAG
CAGCAGCAGCAGAAGAGGTGGCAGCGTGGGTCCTTCCTCTCATCCGCCGC
AGCAGCATGACGCCCGTGACCCTCACCTCACCAACCCCGCCTCCCCCTCC
TCGGCCACCTCTCCCTTGCACCTTCCTCAGTCACTTTACTCGCACTCAAA
ACGACGCGTCCGCAAGCGTTATATGGATCAGCTTATCATGAACTACCTCG
TAATCAAGGGTGACAAGCATGTGGCCGAGTGCTTGACCAGGGAGTCAGGG
GCAGTGCCGCCCGTGGACTTGAAAACGATTGAGGAACGCATGAATGTACG
AAAGGCCCTGATAGCAGGTGAGGTGGATGCAGCCATGGCGCATATCGCTA
AATGTGACCCGAGGCTATTGGAGAGGGAGCAGGGACTGGCATTTACTTTA
AAGCTGCAGAAGCTCGTGGAGATGATTCGACGGCGGATGGAGCAGCGGGA
GGGAGGGATGGAGGGCGAGGGTGCAGACGACGACGAGGTTATTTTGTCGT
ATGCAAGAGAAGAGCTTGCGCCTTGGGGCGAGGCGGAGGAGGGGGGGGGA
GGAGGAAAGGGAGAGAATTTGCAAGCGTTGGAGGAGGCCATGACATTGCT
TGTCTTTGGCACGGCCGCCTTCGGTGCAGCACCCGGCGCAAAAGGAGGAA
AAGAAGGAAGAAGGGGAGAAGAAGAACGAGGAACAGGCGACTTGCTGGAC
CTTTCAAGACGGACAGCCACGGCAGACAGGGTGAATGCGGCGATTCTTCA
AAGCCAAGGCCAAGATTCCGAGCCTGTATTGCCCAGACTGTTGAGAAAAC
TGCGTGCGGCGGAGGACGAGCTGGCATCAGAGATGATGTGTTGA
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Synonyms
Publications