NO07G04020.2, NO07G04020.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G04020.2
Unique NameNO07G04020.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2486
Alignment locationchr7:1119606..1122428 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1119606..1122428 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G04020.2 vs.
Match: XP_005853364.1 (smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526]; EKU22999.1 smu-1 suppressor of mec-8 and unc-52-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 602.8 bits (1553), Expect = 9.700e-169
Identity = 301/360 (83.61%), Postives = 329/360 (91.39%), Query Frame = 0
Query:   17 LTISTTMSAPSPSSASGVYEVEASDVIKLILQFCKENHLLHTLQTLQTEAQVAMNTVDSMENFLADITQGRWDTVLPQVAGLQLPQEKLSAVYEQVCLELIEMRENDLAREMLRTTEPLQVLKIQEPDRYFRLETFLNRNIHDAHELYTYGINKERKRQEIADSLAAEVSVVPPSRLLSLLQQALKYQQLQGTLPKDRRYDLFRGGARTRSKDEMEKPPKKQMGQIKFGSKTHPECARFSPDGQHLVTGSLDGFVEVWDPDTCRLRKELPYQAREELMMHDTAVLSLTFSRDGEMLATGDTEGVVKIWKISSGKCLRKLDPAHAKGITSLAFSRDSLQLATASFDGTARLHGIKAGRVLK 377
            L I + MS+   S+ASGVYEVEASDVIKLILQFCKEN+L  TL TLQ+E+QVAMN+VDSMENFL+D+TQGRWD+VLPQ AGLQLPQ+KL A+YEQVCLELIEMRE +LAREMLRTTEPLQ+LK Q+PDRYFRLETFLNR IHDA ELY YG+NKER+RQEIADSLA EVSVVPPSRLL+LLQQAL+YQQLQG LPKDRRYDLFRG AR+  KDE E+PPKKQ GQIKFGSKTHPECARFSPDG  LVTGSLDGFVEVWDPDTCRLRK+LPYQAREELMMHD AVL+L FSRDGEMLATGDT+G VK+WK+SSGKCLR L  AH+KGITSLAFSRDSLQLATASFDGTARLHG+KAGRVLK
Sbjct:   44 LPIPSRMSSLPTSAASGVYEVEASDVIKLILQFCKENNLHRTLHTLQSESQVAMNSVDSMENFLSDVTQGRWDSVLPQAAGLQLPQDKLLALYEQVCLELIEMRETELAREMLRTTEPLQLLKTQDPDRYFRLETFLNRKIHDAQELYAYGLNKERRRQEIADSLAVEVSVVPPSRLLALLQQALRYQQLQGNLPKDRRYDLFRGSARSAGKDEAERPPKKQAGQIKFGSKTHPECARFSPDGLQLVTGSLDGFVEVWDPDTCRLRKDLPYQAREELMMHDAAVLALAFSRDGEMLATGDTDGAVKVWKLSSGKCLRHLPHAHSKGITSLAFSRDSLQLATASFDGTARLHGVKAGRVLK 403          
The following BLAST results are available for this feature:
BLAST of NO07G04020.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853364.19.700e-16983.61smu-1 suppressor of mec-8 and unc-52-like protein,... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G04020NO07G04020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G04020.2NO07G04020.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G04020.2.cds1NO07G04020.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.2.cds2NO07G04020.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.2.cds3NO07G04020.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G04020.2.cds4NO07G04020.2.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G04020.2 ID=NO07G04020.2|Name=NO07G04020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2486bp
TGGGGAGGTCGAATGAGAGGGATTGTGGCCGGGTTACAAAGGCGGAGATG
GAGGATTTCGACACACGCCACTACCACGAGTATGACAAGAAGTTTGTACA
GCGTTTATCTGTGTAGGGTAATCTCGGTAGGGTGAGCTTGTGATGTGTGA
GGCAGGGCATGGTATCAAGCCAAGTGAAGTGCGTCGCGTCGCAACGTTTG
CAGCTTCGCTTCTTCATGCTCTGAGTGCTTTGCTTGTATTGACAGCGCAT
AAGAGCAAAACCAATATTACCGGTACCCCCGCCACGAGAACGACAACGAA
CTTGTTTCTCGTGCAGTGGAGGCGGTAGTGATAAAGCGAAGTCGCAGGAT
CGAGTGCACAAGGAGCGATGGAAGGGGCTAGTGTTGCCTGCCTTCCTCAC
GCACCCAGCAACTTCTTGCGCAAGCCCTTGAGTGATGAACCAGTAAGCAA
CAATTTCCTTATCTACGGGGACTTGTCTATTGTCCCTTACCGGGCAAGAC
GCTGGCCAAAATCATGCTTCTGACAAGGGTCTCTTTCGCAAAGGAGAACC
GGCCCTACTTGTTGTCTGTCTCGTCCCTCCTCATGAACGATGCTCCCGCT
CATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCTGACCATCTCCA
CGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCGTCTACGAGGTG
GAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGCAAGGAAAATCA
CCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCAAGTTGCCATGA
ATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTACGCAAGGCCGC
TGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTTCCTCAGGAAAA
GCTCTCGGCGGTTTATGAGCAGGTCTGCCTGGAGCTCATCGAAATGCGCG
AAAACGACTTAGCTCGTGAGATGCTCCGAACAACCGAGCCTCTTCAAGTC
CTTAAAATTCAAGAACCCGACCGTTACTTTCGCCTCGAGACCTTTTTGAA
TCGCAATATCCACGACGCGCATGAGCTTTATACATACGGTATCAACAAGG
AGCGAAAACGGCAAGAGATTGCTGACAGCCTTGCCGCTGAAGTTTCCGTC
GTCCCTCCCTCCCGTCTTCTCTCCCTCCTACAACAAGCCTTAAAATATCA
GCAATTACAGGGCACTTTGCCCAAGGACAGGCGGTACGACTTGTTCCGCG
GCGGGGCCCGCACGCGGAGCAAAGATGAAATGGAAAAGCCCCCGAAAAAG
CAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCGGAATGCGCGCG
CTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCTCGACGGTTTCG
TAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGGAATTGCCGTAC
CAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTTTTGTCCTTGAC
ATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACACGGAGGGGGTTG
TGAAGATTTGGAAAATCAGCAGTGGGAAGTGCCTGCGGAAGCTAGATCCT
GCCCATGCTAAGGGAATTACCTCCCTTGCGTTCTCGCGCGATTCGCTGCA
GTTGGCCACGGCTTCTTTTGACGGCACTGCGCGCTTGCACGGGATCAAGG
CTGGAAGAGTTTTAAAGGTACAAAAGATTGATGTTGTTGTGTTGGAAAAA
TCACCGCTATTATCCGCCCTGTCCATACTCTCTCTTTTTTCGTACACTCG
TCGATTGAGACATTGCATTACGCGCTTCCCTCCTTCCCTTTCTCCTCACT
TCTTTCCCTCCTTCTCACTCAGGAATTTCGAGGCCATACGTCCTTTGTCA
ATTGCGTCTGCTTTACGCAGGACGGCAGCCGGGTCCTCACCGGTAGCAGT
GACGGCACCGTCAAAGTCTGGGACGCGCGCACAAGTGATTGCCTCCATAC
TTTTAGACCCGCCATGGAAAAAGTCACTGAAATGGAGGCCATGGTCCACA
CCGTCCTCCCGCTTCCAGGCCCCACGGACTTGTTCTTTGTTGCCAATCGC
ACAGCGACCGCGTATGTGACCACGGCGCAAGGCCAGGTCGTTAAAAGTAT
GTCGAGCGGCAAAAAGGTGGGGGGGATATCACCGCGGCGGCTTTGAGTCC
GAAGGGGACGTATGCGTATTGTGCAGGAGAGGACGGGGTGGTGTACGCCT
TTCATTTGGGAAGGGGGGATTTGGAGAGCTTTGTGAAGGTAGGGGAGAAG
GAGGTGATTGGAGTGGCGCATCATCCGCATAGGAACGTGGTAGTGACCTT
CGGGGACGAGGGGGTCTTGAAAGTCTGGAAGGCGTGAGGGGCGTAGACAG
GATCCGAGGAAATGAAAGGACAAAAAAGACGGTGTTGAGCAAATTGATGA
ATAATGATGAAAATGTTTGTGTGAGATTGTGAGACT
back to top

protein sequence of NO07G04020.2

>NO07G04020.2-protein ID=NO07G04020.2-protein|Name=NO07G04020.2|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MLPLIFSSLPTHHRSRLTISTTMSAPSPSSASGVYEVEASDVIKLILQFC
KENHLLHTLQTLQTEAQVAMNTVDSMENFLADITQGRWDTVLPQVAGLQL
PQEKLSAVYEQVCLELIEMRENDLAREMLRTTEPLQVLKIQEPDRYFRLE
TFLNRNIHDAHELYTYGINKERKRQEIADSLAAEVSVVPPSRLLSLLQQA
LKYQQLQGTLPKDRRYDLFRGGARTRSKDEMEKPPKKQMGQIKFGSKTHP
ECARFSPDGQHLVTGSLDGFVEVWDPDTCRLRKELPYQAREELMMHDTAV
LSLTFSRDGEMLATGDTEGVVKIWKISSGKCLRKLDPAHAKGITSLAFSR
DSLQLATASFDGTARLHGIKAGRVLKVQKIDVVVLEKSPLLSALSILSLF
SYTRRLRHCITRFPPSLSPHFFPSFSLRNFEAIRPLSIASALRRTAAGSS
PVAVTAPSKSGTRAQVIASILLDPPWKKSLKWRPWSTPSSRFQAPRTCSL
LPIAQRPRM*
back to top

mRNA from alignment at chr7:1119606..1122428+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G04020.2 ID=NO07G04020.2|Name=NO07G04020.2|organism=Nannochloropsis oceanica|type=mRNA|length=2823bp|location=Sequence derived from alignment at chr7:1119606..1122428+ (Nannochloropsis oceanica)
TGGGGAGGTCGAATGAGAGGGATTGTGGCCGGGTTACAAAGGCGGAGATG GAGGATTTCGACACACGCCACTACCACGAGTATGACAAGAAGTTTGTACA GCGTTTATCTGTGTAGGGTAATCTCGGTAGGGTGAGCTTGTGATGTGTGA GGCAGGGCATGGTATCAAGCCAAGTGAAGTGCGTCGCGTCGCAACGTTTG CAGCTTCGCTTCTTCATGCTCTGAGTGCTTTGCTTGTATTGACAGCGCAT AAGAGCAAAACCAATATTACCGGTACCCCCGCCACGAGAACGACAACGAA CTTGTTTCTCGTGCAGTGGAGGCGGTAGTGATAAAGCGAAGTCGCAGGAT CGAGTGCACAAGGAGCGATGGAAGGGGCTAGTGTTGCCTGCCTTCCTCAC GCACCCAGCAACTTCTTGCGCAAGCCCTTGAGTGATGAACCAGTAAGCAA CAATTTCCTTATCTACGGGGACTTGTCTATTGTCCCTTACCGGGCAAGAC GCTGGCCAAAATCATGCTTCTGACAAGGGTCTCTTTCGCAAAGGAGAACC GGCCCTACTTGTTGTCTGTCTCGTCCCTCCTCATGAACGATGCTCCCGCT CATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCTGACCATCTCCA CGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCGTCTACGAGGTG GAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGCAAGGAAAATCA CCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCAAGTTGCCATGA ATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTACGCAAGGCCGC TGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTTCCTCAGGAAAA GCTCTCGGCGGTTTATGAGCAGGTGAGGGGGGGAGGACGACGGGAGAGGA GAATTTTTTAGGGGACATCTGACTTAAGTCATTAATTTTTGGACTCTTGA GACCATCCTCTAACCTGTCTTTTCTTCCTTGTCTTCCTCTCCTCCGACTA GGTCTGCCTGGAGCTCATCGAAATGCGCGAAAACGACTTAGCTCGTGAGA TGCTCCGAACAACCGAGCCTCTTCAAGTCCTTAAAATTCAAGAACCCGAC CGTTACTTTCGCCTCGAGACCTTTTTGAATCGCAATATCCACGACGCGCA TGAGCTTTATACATACGGTATCAACAAGGAGCGAAAACGGCAAGAGATTG CTGACAGCCTTGCCGCTGAAGTTTCCGTCGTCCCTCCCTCCCGTCTTCTC TCCCTCCTACAACAAGCCTTAAAATATCAGCAATTACAGGGCACTTTGCC CAAGGACAGGCGGTACGACTTGTTCCGCGGCGGGGCCCGCACGCGGAGCA AAGATGAAATGGAAAAGCCCCCGAAAAAGCAGGTGCGACACACAGACTTC TTTTAAAATTAAGTTTGAAGATGATACAGTGGAATTATGGACACATTACC CTTGACAATACAATTGTACACGTACCAACACACGCATTACATTCACTTTG CTTCAACCCAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCGGAA TGCGCGCGCTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCTCGA CGGTTTCGTAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGGAAT TGCCGTACCAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTTTTG TCCTTGACATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACACGGA GGGGGTTGTGAAGGTGCGTAATGGGTTGGGTCTTGGGTCTTAAGTATAAC ATAACTTGTTCTAACCTCTGTTCCCCCCCGGTATAATTTCAGATTTGGAA AATCAGCAGTGGGAAGTGCCTGCGGAAGCTAGATCCTGCCCATGCTAAGG GAATTACCTCCCTTGCGTTCTCGCGCGATTCGCTGCAGTTGGCCACGGCT TCTTTTGACGGCACTGCGCGCTTGCACGGGATCAAGGCTGGAAGAGTTTT AAAGGTACAAAAGATTGATGTTGTTGTGTTGGAAAAATCACCGCTATTAT CCGCCCTGTCCATACTCTCTCTTTTTTCGTACACTCGTCGATTGAGACAT TGCATTACGCGCTTCCCTCCTTCCCTTTCTCCTCACTTCTTTCCCTCCTT CTCACTCAGGAATTTCGAGGCCATACGTCCTTTGTCAATTGCGTCTGCTT TACGCAGGACGGCAGCCGGGTCCTCACCGGTAGCAGTGACGGCACCGTCA AAGTCTGGGACGCGCGCACAAGTGATTGCCTCCATACTTTTAGACCCGCC ATGGAAAAAGTCACTGAAATGGAGGCCATGGTCCACACCGTCCTCCCGCT TCCAGGCCCCACGGACTTGTTCTTTGTTGCCAATCGCACAGCGACCGCGT ATGTGACCACGGCGCAAGGCCAGGTCGTTAAAAGTATGTCGAGCGGCAAA AAGGTGGGGGGGATATCACCGCGGCGGCTTTGAGTCCGAAGGGGACGTAT GCGTATTGTGCAGGAGAGGACGGGGTGGTGTACGCCTTTCATTTGGGAAG GGGGGATTTGGAGAGCTTTGTGAAGGTAGGGGAGAAGGAGGTGATTGGAG TGGCGCATCATCCGCATAGGAACGTGGTAGTGACCTTCGGGGACGAGGGG GTCTTGAAAGTCTGGAAGGCGTGAGGGGCGTAGACAGGATCCGAGGAAAT GAAAGGACAAAAAAGACGGTGTTGAGCAAATTGATGAATAATGATGAAAA TGTTTGTGTGAGATTGTGAGACT
back to top

Coding sequence (CDS) from alignment at chr7:1119606..1122428+

>NO07G04020.2 ID=NO07G04020.2|Name=NO07G04020.2|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr7:1119606..1122428+ (Nannochloropsis oceanica)
ATGCTCCCGCTCATCTTCTCCTCCCTTCCGACACACCACAGGTCACGTCT
GACCATCTCCACGACTATGAGTGCCCCCTCTCCCTCGTCCGCTTCGGGCG
TCTACGAGGTGGAGGCCTCGGACGTCATCAAGCTCATCCTCCAGTTCTGC
AAGGAAAATCACCTCCTCCACACCCTTCAAACCTTGCAAACCGAGGCCCA
AGTTGCCATGAATACTGTAGACTCCATGGAAAACTTTCTCGCTGACATTA
CGCAAGGCCGCTGGGACACGGTCTTGCCGCAAGTCGCTGGCCTACAGCTT
CCTCAGGAAAAGCTCTCGGCGGTTTATGAGCAGGTCTGCCTGGAGCTCAT
CGAAATGCGCGAAAACGACTTAGCTCGTGAGATGCTCCGAACAACCGAGC
CTCTTCAAGTCCTTAAAATTCAAGAACCCGACCGTTACTTTCGCCTCGAG
ACCTTTTTGAATCGCAATATCCACGACGCGCATGAGCTTTATACATACGG
TATCAACAAGGAGCGAAAACGGCAAGAGATTGCTGACAGCCTTGCCGCTG
AAGTTTCCGTCGTCCCTCCCTCCCGTCTTCTCTCCCTCCTACAACAAGCC
TTAAAATATCAGCAATTACAGGGCACTTTGCCCAAGGACAGGCGGTACGA
CTTGTTCCGCGGCGGGGCCCGCACGCGGAGCAAAGATGAAATGGAAAAGC
CCCCGAAAAAGCAGATGGGACAGATCAAGTTCGGCTCCAAGACCCACCCG
GAATGCGCGCGCTTTTCGCCCGACGGGCAACATCTAGTAACGGGCTCCCT
CGACGGTTTCGTAGAGGTCTGGGACCCGGACACCTGTCGACTGAGGAAGG
AATTGCCGTACCAAGCAAGAGAAGAGTTGATGATGCACGATACGGCGGTT
TTGTCCTTGACATTTTCGAGGGATGGCGAGATGCTGGCGACGGGGGACAC
GGAGGGGGTTGTGAAGATTTGGAAAATCAGCAGTGGGAAGTGCCTGCGGA
AGCTAGATCCTGCCCATGCTAAGGGAATTACCTCCCTTGCGTTCTCGCGC
GATTCGCTGCAGTTGGCCACGGCTTCTTTTGACGGCACTGCGCGCTTGCA
CGGGATCAAGGCTGGAAGAGTTTTAAAGGTACAAAAGATTGATGTTGTTG
TGTTGGAAAAATCACCGCTATTATCCGCCCTGTCCATACTCTCTCTTTTT
TCGTACACTCGTCGATTGAGACATTGCATTACGCGCTTCCCTCCTTCCCT
TTCTCCTCACTTCTTTCCCTCCTTCTCACTCAGGAATTTCGAGGCCATAC
GTCCTTTGTCAATTGCGTCTGCTTTACGCAGGACGGCAGCCGGGTCCTCA
CCGGTAGCAGTGACGGCACCGTCAAAGTCTGGGACGCGCGCACAAGTGAT
TGCCTCCATACTTTTAGACCCGCCATGGAAAAAGTCACTGAAATGGAGGC
CATGGTCCACACCGTCCTCCCGCTTCCAGGCCCCACGGACTTGTTCTTTG
TTGCCAATCGCACAGCGACCGCGTATGTGA
back to top
Synonyms
Publications