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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1110736..1114835 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03990.1 vs.
Match: EWM26962.1 (coiled-coil domain-containing protein 47 [Nannochloropsis gaditana]) HSP 1 Score: 265.4 bits (677), Expect = 3.100e-67 Identity = 155/303 (51.16%), Postives = 193/303 (63.70%), Query Frame = 0
Query: 6 PRPSSPLPVPFLVLL----IPLLCSLTVV--TPQDDPNDEFTDRKPPLSSSISSSSSFPPSLPPPSSASLYIYELCMLLLLVWYFLNYLWGCRENERIKILFLKEFEGLFREQFAHVGPGCVSGMDGNGGWGNGSSLDEVGEKEAHNGEEKKGLVMHKDSNSSFQLWASGRRHVPRGMAITLDLQKRHDLFTKLWERFFPSEDVITLEAGLNPEEVAPFVLALSRRLHHRSLHLTTPDIFNYTTLLLLPVLLPALDTAHFVVYADNDAVVPLVLPPALTRVLEEHKPWFERIHVSDQNTTPVG 303
P +SP P+ L+LL I + C D+ DEF PP + S PS + + +YE+CML +L+ + L + WG RENERIK LFL++ L EQFA+VGPG G +G+ E G+E+ LV K++N+ FQ WASGRRH+PRGMAIT+DLQ R DL L R P ED +TLEAGL+PE+V P +LALSRRLHHRSLHL TPD+ ++T+LLLLPVLLP LDTAHFVVYADN A VPL LPP L R L EHK +F+ IH+SDQN+TPVG
Sbjct: 2 PTAASPPPLRALLLLFWGAIGIQCMTAAAHGITDDEVEDEFLTPDPPPRPFATFSWLGLPS----RVSRISMYEICMLQILLCFLLRFRWGRRENERIKALFLEQCASLLSEQFAYVGPGSEVGREGSQ------------PAEGRPGKEED-LVAFKEANACFQFWASGRRHLPRGMAITVDLQPRQDLLHVLRARVLPGEDSVTLEAGLSPEDVPPIILALSRRLHHRSLHLLTPDLLHHTSLLLLPVLLPDLDTAHFVVYADNAAPVPLALPPRLARRLNEHKHFFDHIHISDQNSTPVG 287
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03990.1 ID=NO07G03990.1|Name=NO07G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=3455bp TTTTCTTGTTGCATTTTTTTTCATTCTAATGCCTTCATGTAGTGTATGGT ATCTCTTTTCCTTCTCGAAATAGTGCGGCATAATCAATACCTGCATGCCC TAGATTCGTATTCCCTTGTCACTCCCTCCTGCTGCTTCTCCTCCCCCTCC TTTCACGAGTCTCTTCATTTTTCTTCTTGCCTTCGTCGCTGTCATTATTC TTCTCCTCCTGCTCTTCCTCCTCCTCCTCTTCACCTGACCGCCTCACCAT AGCGTCATTAGGTGACCCCCCCTCCTCCTCCTCCTCCCCCTCCTCCTCAT CCCTCTCCTTCCTCCTCTTTTCATCCACCATCTCATCTTTCTCCTCCTCT CCCCTTTCCCCCTTCTTCTTTTCCTCCACCACAACCTCTCCCTTACCATA ACCCTCTCCCTCCTCCCCTGCCCCCCCATCCCCATTCCCATCCCCATTCC CAACTGACGAAGACTCGTCTTCCACCCCAGCAGAAAGCACTGTGGCATCC TCCCTCTCCTTTCCTCCACCCCCGTCCTCCTCCTCCTCCCCTCTCCCCGC CGGTCCCCACTTCTCCGTGAAAGCCAACTCCGCCTTCCTCCCCTCTTCCG CCCTCTCCTCCTCCCTCCTCCTTACCTTCTCCTCCCCCTCCCTCCGACTC TCCTCCAATTTCTCCGTCATAGCCTCATTCATCCGTGCCGGCAACCAAAA CAACTTGGGCTCCACTCGCGTCAAAATAAAGCCCTTAAATGCACCCCAAT ATTCCCTATACCTCGCGCAGTCTAGCTCTCCCTCCACCTTCTTCTGTCGC ACCGCCAACCACTCCCTCCTCCTCTCCTCTCCCCTCCTCCTCTTCTCCCT CTCCTCTTCCTCCTTCACCTTCCTCCTCTCCGCCTCCTCCCTATCCTTAC CCACCACCACCTCCATCACCCCTCGTTGCTTCCGCAGAATCCCACTTCCC TCCCCATCCTTCTTCAGCCTCGCCTGCGCCGCACCCAAATGCCCCATCAA CACCCCAAACATCCGTCTGTCCCTCTTCTTCACCTCTTCCTTCTGGTAGA TATTCTTCATTTCCCCTCTCTCTTCTGCCCTTAATTCTGCCGCCTCGTAT GCCTCGTCCCTCATCGCCTTCAGCGCTGCCTGTCGTGCAGGATCCACCAC CACCGTTGCCACAGCTGGGCCCCTCCCTCTTCCTCCCCTTCCTCCGTTTT CTCCATCACGTCGCAGAGTCTTGCGAGCCCTCCCTCCCTCCTGATCGGGC ACTTCCCCTTCCTCGATCTCCCCCTTCTCCTCCCCTCCCGGTACACTCAC CGCCGAGGCCAATCTTCCCCGCTTCTCACCCACGCGAGAAAGCAATCCCC CGTCCCGCCGAGGAGAGGTCGGACGCCCGTGCCTGGGGTACATGGTACCG TCGCTCGCTCCTCCTCTGCGGCTTCCTCCTCCTCCTCCTCCTCCCCCTGC TCCTGCTTCATCTAGGATGACTTGTCGATTACTGCGACCCCACCCGCCAC CACTGCCACCACTGCCGCCGCGGGCATGGCTCAGCTTCTTCTCAAGAATT TGACGCTCTTTTTGGATTTCGCCCAGCTTGGCTTGCAGGGAGGCTACGGT ACTGCTGCTGCTAGACATGTCTTTAAATGGTGCCTGCTCATGTGTGTGTG GCAGGGGAGCGGGGAGGCGAAGGGGAATGAGAAAGAGTGGGGCGCAAAAG AACGACAGACACGCCAGCAACAAAGTACACCTCTGGTTGGAATGTACAGG GGGCCATGGTGGCTATCAGTGTAGGAAAGATATAAACGAGCAAGCGCAGA CACAAGGGAATGGATAAGTGCTCGGGCCGCATAGAAGAAGAAAACTCGCC ATCTTCGAGTCGTCTCAACCGACAGCCTGTCAGAATAATAAGACCAAAAG CACTCACACCTCTTCCCTTACCTAGCAAACAGCACATTGGTGTCAGGCAA GGCAGGGCATTTTATAGCTAGAGAACTTTCCTGCCTGCCGCCCTACCATC CTCCTCCCTCACCTCCCCCCTCGGCCAACCTCAATGCCTCTTCTACGTCC CCGGCCGTCATCACCCCTGCCCGTCCCTTTCCTCGTGCTCCTCATTCCTC TTCTCTGCTCTCTGACTGTGGTCACGCCGCAAGACGACCCCAACGACGAG TTTACGGACCGGAAACCTCCACTTTCCTCCTCTATCTCCTCCTCCTCCTC TTTCCCTCCCTCTCTCCCTCCCCCTTCCTCCGCAAGTCTTTACATCTACG AGCTCTGCATGCTCCTACTCCTCGTCTGGTATTTTCTCAACTACTTATGG GGATGTCGCGAGAACGAACGGATCAAGATCTTGTTTCTGAAGGAGTTTGA AGGCCTTTTTCGCGAGCAATTCGCCCATGTTGGCCCGGGGTGTGTGAGTG GCATGGACGGGAACGGTGGGTGGGGAAATGGTAGTAGCCTGGACGAAGTA GGAGAGAAGGAGGCCCACAATGGAGAGGAAAAGAAGGGGTTGGTCATGCA CAAGGACTCAAATTCCTCCTTCCAGCTGTGGGCCTCCGGTCGTCGGCATG TTCCAAGAGGGATGGCCATCACCCTAGACCTGCAGAAAAGACACGACCTC TTCACGAAGCTATGGGAAAGGTTCTTCCCGTCAGAGGACGTCATCACCCT CGAAGCGGGCCTCAACCCTGAGGAGGTGGCGCCCTTTGTCCTCGCCCTCT CCCGGCGCCTGCACCACCGCTCCCTCCACCTTACTACCCCCGACATCTTC AACTACACCACCCTCCTCCTCCTACCCGTCCTCCTTCCCGCCCTCGACAC GGCCCATTTCGTCGTCTACGCGGACAACGACGCCGTCGTGCCCCTCGTCC TCCCTCCTGCCCTCACCCGCGTCTTGGAGGAGCACAAACCTTGGTTCGAA AGGATACACGTCAGTGATCAGAACACGACCCCTGTAGGGGGACACCCCTT CCTCCCCCCCGTCATCCTTCGCGCCCGTTTCCTGGTCCCCACCAACGAAG CCGACATGCACACGCACCTTCGGCCGTTGCTTTCCCTTGTCTTTGAGCTC TTGGATCACGTGGCAGGGGGAAAGGTACGGCTGTCGGAGGCCGCGCGGAG AAGAAGTAAAGAGGTGCGGGCCGTGATCGAGGCCAAGAAGCTGATGGAGC TGCAGAAGGCCCACCAGCAGGAGAGGGAGTGGAAGAAGAGGGAGAAGCAA CGGAGGGAACAGGAGGCATATGCGCGCTTGACGCCGGAACAAAAGCGGCG GAAAGAGGAAAAAGACGCCAAGAAAAAGAGACACGAGGAAGCGAAGAGGT GGGCGAGGACACACATGAGCTAGCAAAGTGGTTGCACCAGGGAGGGAGGG TGATGTGTGATGGTGAAAGAGAGAAGTGACAGCAAATGGTAGCAAAGAAC ATTTAGAAATATAAAGTGTGAAAGAAAGGGAATGCGTGCAAGTGCGTCTT CTCAT back to topprotein sequence of NO07G03990.1 >NO07G03990.1-protein ID=NO07G03990.1-protein|Name=NO07G03990.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp MPLLRPRPSSPLPVPFLVLLIPLLCSLTVVTPQDDPNDEFTDRKPPLSSS ISSSSSFPPSLPPPSSASLYIYELCMLLLLVWYFLNYLWGCRENERIKIL FLKEFEGLFREQFAHVGPGCVSGMDGNGGWGNGSSLDEVGEKEAHNGEEK KGLVMHKDSNSSFQLWASGRRHVPRGMAITLDLQKRHDLFTKLWERFFPS EDVITLEAGLNPEEVAPFVLALSRRLHHRSLHLTTPDIFNYTTLLLLPVL LPALDTAHFVVYADNDAVVPLVLPPALTRVLEEHKPWFERIHVSDQNTTP VGGHPFLPPVILRARFLVPTNEADMHTHLRPLLSLVFELLDHVAGGKVRL SEAARRRSKEVRAVIEAKKLMELQKAHQQEREWKKREKQRREQEAYARLT PEQKRRKEEKDAKKKRHEEAKRWARTHMS* back to topmRNA from alignment at chr7:1110736..1114835- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03990.1 ID=NO07G03990.1|Name=NO07G03990.1|organism=Nannochloropsis oceanica|type=mRNA|length=4100bp|location=Sequence derived from alignment at chr7:1110736..1114835- (Nannochloropsis oceanica) TTTTCTTGTTGCATTTTTTTTCATTCTAATGCCTTCATGTAGTGTATGGT
ATCTCTTTTCCTTCTCGAAATAGTGCGGCATAATCAATACCTGCATGCCC
TAGATTCGTATTCCCTTGTCACTCCCTCCTGCTGCTTCTCCTCCCCCTCC
TTTCACGAGTCTCTTCATTTTTCTTCTTGCCTTCGTCGCTGTCATTATTC
TTCTCCTCCTGCTCTTCCTCCTCCTCCTCTTCACCTGACCGCCTCACCAT
AGCGTCATTAGGTGACCCCCCCTCCTCCTCCTCCTCCCCCTCCTCCTCAT
CCCTCTCCTTCCTCCTCTTTTCATCCACCATCTCATCTTTCTCCTCCTCT
CCCCTTTCCCCCTTCTTCTTTTCCTCCACCACAACCTCTCCCTTACCATA
ACCCTCTCCCTCCTCCCCTGCCCCCCCATCCCCATTCCCATCCCCATTCC
CAACTGACGAAGACTCGTCTTCCACCCCAGCAGAAAGCACTGTGGCATCC
TCCCTCTCCTTTCCTCCACCCCCGTCCTCCTCCTCCTCCCCTCTCCCCGC
CGGTCCCCACTTCTCCGTGAAAGCCAACTCCGCCTTCCTCCCCTCTTCCG
CCCTCTCCTCCTCCCTCCTCCTTACCTTCTCCTCCCCCTCCCTCCGACTC
TCCTCCAATTTCTCCGTCATAGCCTCATTCATCCGTGCCGGCAACCAAAA
CAACTTGGGCTCCACTCGCGTCAAAATAAAGCCCTTAAATGCACCCCAAT
ATTCCCTATACCTCGCGCAGTCTAGCTCTCCCTCCACCTTCTTCTGTCGC
ACCGCCAACCACTCCCTCCTCCTCTCCTCTCCCCTCCTCCTCTTCTCCCT
CTCCTCTTCCTCCTTCACCTTCCTCCTCTCCGCCTCCTCCCTATCCTTAC
CCACCACCACCTCCATCACCCCTCGTTGCTTCCGCAGAATCCCACTTCCC
TCCCCATCCTTCTTCAGCCTCGCCTGCGCCGCACCCAAATGCCCCATCAA
CACCCCAAACATCCGTCTGTCCCTCTTCTTCACCTCTTCCTTCTGGTAGA
TATTCTTCATTTCCCCTCTCTCTTCTGCCCTTAATTCTGCCGCCTCGTAT
GCCTCGTCCCTCATCGCCTTCAGCGCTGCCTGTCGTGCAGGATCCACCAC
CACCGTTGCCACAGCTGGGCCCCTCCCTCTTCCTCCCCTTCCTCCGTTTT
CTCCATCACGTCGCAGAGTCTTGCGAGCCCTCCCTCCCTCCTGATCGGGC
ACTTCCCCTTCCTCGATCTCCCCCTTCTCCTCCCCTCCCGGTACACTCAC
CGCCGAGGCCAATCTTCCCCGCTTCTCACCCACGCGAGAAAGCAATCCCC
CGTCCCGCCGAGGAGAGGTCGGACGCCCGTGCCTGGGGTACATGGTACCG
TCGCTCGCTCCTCCTCTGCGGCTTCCTCCTCCTCCTCCTCCTCCCCCTGC
TCCTGCTTCATCTAGGATGACTTGTCGATTACTGCGACCCCACCCGCCAC
CACTGCCACCACTGCCGCCGCGGGCATGGCTCAGCTTCTTCTCAAGAATT
TGACGCTCTTTTTGGATTTCGCCCAGCTTGGCTTGCAGGGAGGCTACGGT
ACTGCTGCTGCTAGACATGTCTTTAAATGGTGCCTGCTCATGTGTGTGTG
GCAGGGGAGCGGGGAGGCGAAGGGGAATGAGAAAGAGTGGGGCGCAAAAG
AACGACAGACACGCCAGCAACAAAGTACACCTCTGGTTGGAATGTACAGG
GGGCCATGGTGGCTATCAGTGTAGGAAAGATATAAACGAGCAAGCGCAGA
CACAAGGGAATGGATAAGTGCTCGGGCCGCATAGAAGAAGAAAACTCGCC
ATCTTCGAGTCGTCTCAACCGACAGCCTGTCAGAATAATAAGACCAAAAG
CACTCACACCTCTTCCCTTACCTAGCAAACAGCACATTGGTGTCAGGCAA
GGCAGGGCATTTTATAGCTAGAGAACTTTCCTGCCTGCCGCCCTACCATC
CTCCTCCCTCACCTCCCCCCTCGGCCAACCTCAATGCCTCTTCTACGTCC
CCGGCCGTCATCACCCCTGCCCGTCCCTTTCCTCGTGCTCCTCATTCCTC
TTCTCTGCTCTCTGACTGTGGTCACGCCGCAAGACGACCCCAACGACGAG
TTTACGGACCGGAAACCTCCACTTTCCTCCTCTATCTCCTCCTCCTCCTC
TTTCCCTCCCTCTCTCCCTCCCCCTTCCTCCGCAAGTCTTTACATCTACG
AGCTCTGCATGCTCCTACTCCTCGTCTGGTATTTTCTCAACTACTTATGG
GGATGTCGCGAGAACGAACGGATCAAGATCTTGTTTCTGAAGGAGTTTGA
AGGCCTTTTTCGCGAGCAATTCGCCCATGTTGGCCCGGGGTGTGTGAGTG
GCATGGACGGGAACGGTGGGTGGGGAAATGGTAGTAGCCTGGACGAAGTA
GGAGAGAAGGAGGCCCACAATGGAGAGGAAAAGAAGGGGTTGGTCATGCA
CAAGGTACGATTAGGCGACAGGAAAGGAATGTGTCGTATATCGCCGCCGT
TTTCATCACTTTCTGACTGTGGAATTTAGCTCCCTCTTTCCCCTCCCACC
TCCCCCTGGCCAGACTCCATATAATATTTCCAGCCTCAGGCCCATGCCTT
TTGACACGTACGAGGATACGAAAAACCACCCACTAAATTCCTCTTCATTC
CTCCCTCCCTCCCACCCGTCCTTCCCTCCCTCCCTCCCTCCCTTCCCCCC
CTTGTCCAGGACTCAAATTCCTCCTTCCAGCTGTGGGCCTCCGGTCGTCG
GCATGTTCCAAGAGGGATGGCCATCACCCTAGACCTGCAGAAAAGACACG
ACCTCTTCACGAAGCTATGGGAAAGGTTCTTCCCGTCAGAGGTGAGGAAG
GAAAAAGGGAGGGAGGGAGGGAGGGCGGTCGTGTGCAGCATGTAAAGGTG
GAAGTGAATAGACATAGAGCCTCCGATGAATCAGGGCTTATTCATTTCTT
ACAGATACATGAACACCCTCCTTCCCTCCCTCCTCCCTCCCTTCTTTCCC
TCAGGACGTCATCACCCTCGAAGCGGGCCTCAACCCTGAGGAGGTGGCGC
CCTTTGTCCTCGCCCTCTCCCGGCGCCTGCACCACCGCTCCCTCCACCTT
ACTACCCCCGACATCTTCAACTACACCACCCTCCTCCTCCTACCCGTCCT
CCTTCCCGCCCTCGACACGGCCCATTTCGTCGTCTACGCGGACAACGACG
CCGTCGTGCCCCTCGTCCTCCCTCCTGCCCTCACCCGCGTCTTGGAGGAG
CACAAACCTTGGTTCGAAAGGATACACGTCAGTGATCAGAACACGACCCC
TGTAGGGTAAGGAGGGAGGGAGGGAGGGAGGAGAATTCACGGTCGGTGAG
TTGGGACCGACGACTTGGCCCCCAAGAAAAGAAAAATGTGAATCTTCAGC
ACCTTCATCAGTATCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTGTCCGCTTCCAAACTCACAAGGCGCACTCTCCCCCCTCCTC
CCCTTTCCATTCCTCCCTCCCTCCACTCTACAGGGGACACCCCTTCCTCC
CCCCCGTCATCCTTCGCGCCCGTTTCCTGGTCCCCACCAACGAAGCCGAC
ATGCACACGCACCTTCGGCCGTTGCTTTCCCTTGTCTTTGAGCTCTTGGA
TCACGTGGCAGGGGGAAAGGTACGGCTGTCGGAGGCCGCGCGGAGAAGAA
GTAAAGAGGTGCGGGCCGTGATCGAGGCCAAGAAGCTGATGGAGCTGCAG
AAGGCCCACCAGCAGGAGAGGGAGTGGAAGAAGAGGGAGAAGCAACGGAG
GGAACAGGAGGCATATGCGCGCTTGACGCCGGAACAAAAGCGGCGGAAAG
AGGAAAAAGACGCCAAGAAAAAGAGACACGAGGAAGCGAAGAGGTGGGCG
AGGACACACATGAGCTAGCAAAGTGGTTGCACCAGGGAGGGAGGGTGATG
TGTGATGGTGAAAGAGAGAAGTGACAGCAAATGGTAGCAAAGAACATTTA
GAAATATAAAGTGTGAAAGAAAGGGAATGCGTGCAAGTGCGTCTTCTCAT
back to topCoding sequence (CDS) from alignment at chr7:1110736..1114835- >NO07G03990.1 ID=NO07G03990.1|Name=NO07G03990.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr7:1110736..1114835- (Nannochloropsis oceanica) ATGCCTCTTCTACGTCCCCGGCCGTCATCACCCCTGCCCGTCCCTTTCCT CGTGCTCCTCATTCCTCTTCTCTGCTCTCTGACTGTGGTCACGCCGCAAG ACGACCCCAACGACGAGTTTACGGACCGGAAACCTCCACTTTCCTCCTCT ATCTCCTCCTCCTCCTCTTTCCCTCCCTCTCTCCCTCCCCCTTCCTCCGC AAGTCTTTACATCTACGAGCTCTGCATGCTCCTACTCCTCGTCTGGTATT TTCTCAACTACTTATGGGGATGTCGCGAGAACGAACGGATCAAGATCTTG TTTCTGAAGGAGTTTGAAGGCCTTTTTCGCGAGCAATTCGCCCATGTTGG CCCGGGGTGTGTGAGTGGCATGGACGGGAACGGTGGGTGGGGAAATGGTA GTAGCCTGGACGAAGTAGGAGAGAAGGAGGCCCACAATGGAGAGGAAAAG AAGGGGTTGGTCATGCACAAGGACTCAAATTCCTCCTTCCAGCTGTGGGC CTCCGGTCGTCGGCATGTTCCAAGAGGGATGGCCATCACCCTAGACCTGC AGAAAAGACACGACCTCTTCACGAAGCTATGGGAAAGGTTCTTCCCGTCA GAGGACGTCATCACCCTCGAAGCGGGCCTCAACCCTGAGGAGGTGGCGCC CTTTGTCCTCGCCCTCTCCCGGCGCCTGCACCACCGCTCCCTCCACCTTA CTACCCCCGACATCTTCAACTACACCACCCTCCTCCTCCTACCCGTCCTC CTTCCCGCCCTCGACACGGCCCATTTCGTCGTCTACGCGGACAACGACGC CGTCGTGCCCCTCGTCCTCCCTCCTGCCCTCACCCGCGTCTTGGAGGAGC ACAAACCTTGGTTCGAAAGGATACACGTCAGTGATCAGAACACGACCCCT GTAGGGGGACACCCCTTCCTCCCCCCCGTCATCCTTCGCGCCCGTTTCCT GGTCCCCACCAACGAAGCCGACATGCACACGCACCTTCGGCCGTTGCTTT CCCTTGTCTTTGAGCTCTTGGATCACGTGGCAGGGGGAAAGGTACGGCTG TCGGAGGCCGCGCGGAGAAGAAGTAAAGAGGTGCGGGCCGTGATCGAGGC CAAGAAGCTGATGGAGCTGCAGAAGGCCCACCAGCAGGAGAGGGAGTGGA AGAAGAGGGAGAAGCAACGGAGGGAACAGGAGGCATATGCGCGCTTGACG CCGGAACAAAAGCGGCGGAAAGAGGAAAAAGACGCCAAGAAAAAGAGACA CGAGGAAGCGAAGAGGTGGGCGAGGACACACATGAGCTAG back to top
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