NO07G03980.1, NO07G03980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03980.1
Unique NameNO07G03980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2173
Alignment locationchr7:1106941..1110284 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1106941..1110284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03980.1 vs.
Match: EWM26963.1 (hypothetical protein Naga_101509g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 468.8 bits (1205), Expect = 2.300e-128
Identity = 230/268 (85.82%), Postives = 247/268 (92.16%), Query Frame = 0
Query:    1 MPFRLNRWGGVHNEEVDRKAIMGLKILLLVAIPTVMASTVFAGMYAWIQGRQYGYTVEDWQRCLVAPNKGGFGVGDQTLFTGSAATFAMKAIVFLILSFNGVNAGLMDHDMLPYALFVSFSGLLGMTIYRESSPIQPEPRAMSVTLVTLTKFIHPHMYADFPVYQAQPDPSLCVHAYHFNLAFLVSQYIMLLLAVGLFSIAVYTLVYSPRDYLDTRLDGSRNAMLLVPVIMTGYVLTLLAKEIVAVDTMQVLQDSQLGYMFMFKKADM 269
            MP +LNRWGGVHNEEVDRKAI  LKILLLVAIPTVMAST+ A +YAWIQGRQYGYTVEDWQRCLV+PNKGGFGVGDQTLFTGSAATFAMKA+VFLILSFNGVNAGL+DHDMLPYALFVSFSGLLGMT+YRESSPIQPEPR MS TLVTLTKFIHP MYAD P YQ QP+PSLC HA+HFN AFLV QY+MLLL VGLFSIAVYT+ +SPRDYLD RL G+R  + LVPVIMTGY+LTLLAKEIVAV+TMQVLQ+SQLGYMFMFKKADM
Sbjct:    1 MPIQLNRWGGVHNEEVDRKAIFALKILLLVAIPTVMASTILATVYAWIQGRQYGYTVEDWQRCLVSPNKGGFGVGDQTLFTGSAATFAMKAVVFLILSFNGVNAGLIDHDMLPYALFVSFSGLLGMTVYRESSPIQPEPRVMSATLVTLTKFIHPRMYADLPAYQGQPEPSLCTHAFHFNQAFLVVQYMMLLLGVGLFSIAVYTIAFSPRDYLDVRLAGTRATLTLVPVIMTGYLLTLLAKEIVAVETMQVLQESQLGYMFMFKKADM 268          
The following BLAST results are available for this feature:
BLAST of NO07G03980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26963.12.300e-12885.82hypothetical protein Naga_101509g1, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03980NO07G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03980.1NO07G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03980.1.cds1NO07G03980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds2NO07G03980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds3NO07G03980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds4NO07G03980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds5NO07G03980.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds6NO07G03980.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03980.1.cds7NO07G03980.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03980.1 ID=NO07G03980.1|Name=NO07G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp
ACGACTTCAATGGGCCAGGCATTAATCAATCAAGGTAAACCCCGCTCGTA
CGGTACGACACAAGAAGTCCAGAACCTAAATCAATTCGAAAAACTATATA
AGTACTGGTCTGTAGACGCAAATACAGTCCAGTTGTGCAGGGTTGGTGCA
CATGTTTAGGAAAAGGGCAAAAGACTGGGGAAGTCGAGAGTAGGAGAAAG
AAAAAAATGAAAATTGAATTTCCCCTGTAGGATGCTATAGAATCTATGAT
GATCGGGCTCCTAGGCCCAGACCCACTCATCAACAGGGATAACGAGGAGA
ATGGCAATTTCAAGGAGCAGGAGAAGGGCAATGTCAAGGAGGTGGTGGTA
CACGGTGGCCTCCCCTCTCTCCTGACACCCTCCTGCTATGACAGTGTGAC
AATCCGCCGCCGCCGCTGCCATCCGCCCTACTTCCCCAAAACATGCATAC
ATACGCAAACGCATAAACACAGGCGCCTCCCACCAGGCGCGGCATTTAGA
GAGAGAGAGAGCCATGCCGTTCCGGCTCAATCGCTGGGGCGGGGTTCACA
ATGAAGAGGTGGATAGGAAAGCCATCATGGGGTTGAAAATCTTGCTGCTG
GTCGCAATTCCAACCGTCATGGCCTCGACGGTTTTTGCCGGCATGTACGC
CTGGATCCAAGGGCGGCAGTACGGATACACAGTCGAAGATTGGCAACGGT
GCCTGGTCGCCCCCAACAAAGGAGGCTTTGGCGTTGGGGACCAGACTCTC
TTCACGGGATCAGCGGCGACGTTCGCCATGAAGGCCATCGTCTTTCTCAT
CCTCTCCTTCAACGGCGTCAATGCCGGGCTGATGGACCACGACATGCTGC
CCTACGCTCTCTTTGTCTCCTTTTCAGGCCTCCTGGGAATGACGATCTAT
CGCGAATCGTCCCCTATTCAACCTGAGCCTCGTGCCATGAGCGTCACTCT
CGTCACGCTCACAAAATTCATCCATCCCCACATGTATGCCGATTTCCCCG
TGTATCAAGCTCAGCCTGACCCGAGTCTGTGTGTGCATGCCTATCACTTT
AATCTGGCCTTCTTGGTGTCACAATACATCATGCTTCTGTTGGCCGTCGG
GCTTTTTTCGATTGCCGTTTACACGCTCGTGTATTCCCCGAGGGATTATC
TCGACACGCGGCTGGATGGTTCTAGGAATGCCATGTTGCTGGTACCTGTG
ATTATGACGGGTTATGTGCTTACCTTGCTGGCCAAGGAGATCGTGGCGGT
GGACACGATGCAGGTCCTCCAAGATTCCCAGCTAGGCTACATGTTCATGT
TCAAGAAAGCCGATATGGATGTGATATCGATGACTATGATGGTCACATGC
GGTGCTGTCTTGGTCGGCTCCTTCCACGAGTGCAAGAACAAGTTCAGATT
AGCCTCTTTCATGGCGTTTTTGCACGTCCTCATCTCCCTCCCCGTCATGG
CGGGGACCTTCGCAGCTTACGACTCATTGACTTACCCCTACAAGGGCAGC
ACGTACCGGCTCTGGGAGACAGTATCCTGCAAGACGTACATCAACACCAA
GAATCTGGGCATCTTCGGTGATTATCCAGGCGAGCTAAACGAGATCTGTC
GGGAGGTTCAACTCTCGCTCGTCGGACAGACTATCATCTTCCTGGCCATG
TTCTTCCAGATGATCTGCTGCCTCCGCGTCGTCCTCACCAACGAAGGTCC
CGTCCGTCCTCCTCACGAGACACGGTGCATGTCCTGCGCATACCGGCAAG
AAAGCGAGGGTCTGTTATCCTTTGTGCGGCAGCCCACCATTATGGGGTCT
CTGTCCATGTACGCACGGCCCTCCTCCTTCTCACCCTCGCATAAAGCGTC
ACCGTATCGATTGAGGCCGGGGGAGGGTGAGGGGGGGGGAGCGATGGACC
GACCGTTATTGTCGGAGTGGGGGAACAGCAGTGAAGAGAGCGAGGAGGAC
ACGCGAGAGGAGAGGGGAAGGAGGAGGGTTGGAAAGAGGAGGGGGGGGGG
GGCGAATGGATGGAGGGAGGACGGAGCAGTGTTGACGGATGATCTGGCCA
GGGAAGTGGGCTATGCTGAGGAGGAAGAGAGGGCGTGAGGAGGGGGGGAG
GGAGGGGAGGAGGGAAGGGGGAGTACGTAAAGTGTACATAGCTGGCAACT
TGGAACCAAAGTAATTAACCCAA
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protein sequence of NO07G03980.1

>NO07G03980.1-protein ID=NO07G03980.1-protein|Name=NO07G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MPFRLNRWGGVHNEEVDRKAIMGLKILLLVAIPTVMASTVFAGMYAWIQG
RQYGYTVEDWQRCLVAPNKGGFGVGDQTLFTGSAATFAMKAIVFLILSFN
GVNAGLMDHDMLPYALFVSFSGLLGMTIYRESSPIQPEPRAMSVTLVTLT
KFIHPHMYADFPVYQAQPDPSLCVHAYHFNLAFLVSQYIMLLLAVGLFSI
AVYTLVYSPRDYLDTRLDGSRNAMLLVPVIMTGYVLTLLAKEIVAVDTMQ
VLQDSQLGYMFMFKKADMDVISMTMMVTCGAVLVGSFHECKNKFRLASFM
AFLHVLISLPVMAGTFAAYDSLTYPYKGSTYRLWETVSCKTYINTKNLGI
FGDYPGELNEICREVQLSLVGQTIIFLAMFFQMICCLRVVLTNEGPVRPP
HETRCMSCAYRQESEGLLSFVRQPTIMGSLSMYARPSSFSPSHKASPYRL
RPGEGEGGGAMDRPLLSEWGNSSEESEEDTREERGRRRVGKRRGGGANGW
REDGAVLTDDLAREVGYAEEEERA*
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mRNA from alignment at chr7:1106941..1110284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03980.1 ID=NO07G03980.1|Name=NO07G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=3344bp|location=Sequence derived from alignment at chr7:1106941..1110284- (Nannochloropsis oceanica)
ACGACTTCAATGGGCCAGGCATTAATCAATCAAGGTAAACCCCGCTCGTA CGGTACGACACAAGAAGTCCAGAACCTAAATCAATTCGAAAAACTATATA AGTACTGGTCTGTAGACGCAAATACAGTCCAGTTGTGCAGGGTTGGTGCA CATGTTTAGGAAAAGGGCAAAAGACTGGGGAAGTCGAGAGTAGGAGAAAG AAAAAAATGAAAATTGAATTTCCCCTGTAGGATGCTATAGAATCTATGAT GATCGGGCTCCTAGGCCCAGACCCACTCATCAACAGGGATAACGAGGAGA ATGGCAATTTCAAGGAGCAGGAGAAGGGCAATGTCAAGGAGGTGGTGGTA CACGGTGGCCTCCCCTCTCTCCTGACACCCTCCTGCTATGACAGTGTGAC AATCCGCCGCCGCCGCTGCCATCCGCCCTACTTCCCCAAAACATGCATAC ATACGCAAACGCATAAACACAGGCGCCTCCCACCAGGCGCGGCATTTAGA GAGAGAGAGAGCCATGCCGTTCCGGCTCAATCGCTGGGGCGGGGTTCACA ATGAAGAGGTGGATAGGAAAGCCATCATGGGGTTGAAAATCTTGCTGCTG GTCGCAATTCCAACCGTCATGGCCTCGACGGTTTTTGCCGGCATGTACGC CTGGATCCAAGGGCGGCAGTACGGATACACAGTCGAAGATTGGCAACGGT GCCTGGTCGCCCCCAACAAAGGAGGCTTTGGCGTTGGGGACCAGACTCTC TTCACGGGATCAGCGGTGCGCGAGGGAGAGGAAGGGTGGAGGGAGAGGGA GGAGGGAGAGGAAGCATCTCATGATGTAATCGTTTCGTGTCGTCCAATGA TGCTATGTCGTCACAGGAATTAAACCTCGCTGTTTCCCTCTTGTCCATAC GAGATTTTCTCAAAGCTTGTCCCCCCCACCCCACTCACCACTCCCCGCTC CGTTACTTCCTCCCCTCCCCCCCTCCCTCGACACCTACAGGCGACGTTCG CCATGAAGGCCATCGTCTTTCTCATCCTCTCCTTCAACGGCGTCAATGCC GGGCTGATGGACCACGACATGCTGCCCTACGCTCTCTTTGTCTCCTTTTC AGGCCTCCTGGGAATGACGATCTATCGCGAATCGTCCCCTATTCAACCTG AGCCTCGTGCCATGAGCGTCACTCTCGTCACGCTCACAAAATTCATCCAT CCCCACATGTATGCCGATTTCCCCGTGTATCAAGCTCAGCCTGACCCGAG TCTGTGTGTGCATGCCTATCACTTTAATCTGGCCTTCTTGGTGTCACAAT ACATCATGCTTCTGTTGGCCGTCGGGCTTTTTTCGATTGCCGTTTACACG CTCGTGTATTCCCCGAGGGATTATCTCGACACGCGGCTGGATGGTTCTAG GAATGCCATGTTGCTGGTACCTGTGATTATGACGGGTTATGTGCTTACCT TGCTGGCCAAGGAGATCGTGGCGGTGGACACGATGCAGGTAGGTAGGGAA GGAGGGAGGGAGGGAGGGCTATGCCATGTGACATGGGAAGCTTTGTTTTC ACTCCCTCCCTCCCTCCCTCCCTTCCTCTTTCTCCCCCTCAACAGGTCCT CCAAGATTCCCAGCTAGGCTACATGTTCATGTTCAAGAAAGCCGATATGG GTACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT CCCTCCCTTCCTCCCTCCCTCCCTTCCTCCTTCCTTCCTTCCTCAACTCC CTCTCCCCCCTTTTCTCATTCTTTCATCAACCTTCTCTCCCTCGCCACTT CCTTTCACGTCAATCCCCACTCCCCTTTCCCCTCCCTCCTTCCCTCCTTC CCCTCAGATGTGATATCGATGACTATGATGGTCACATGCGGTGCTGTCTT GGTCGGCTCCTTCCACGAGTGCAAGAACAAGTTCAGATTAGCCTCTTTCA TGGCGTTTTTGCACGTACGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGC GGGAGGGAGGGAGGGAGGGAGGGCGAGAAGGCGGGAGAGAAATCTGGCAA GAGGAACGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAGTGCAGGAA GGGAAGAGAGGAAAGGCCAAGCAATTATTCATTTGTGCCATCTATCACTC CCTCTGAATTCGCACCCCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCTC GCTTCCCGTAGGTCCTCATCTCCCTCCCCGTCATGGCGGGGACCTTCGCA GCTTACGACTCATTGACTTACCCCTACAAGGGCAGCACGTACCGGCTCTG GGAGACAGTATCCTGCAAGACGTACATCAACACCAAGAATCTGGTGAGCA CGGGAGGGAGGGAGGGAGGGAGGGAGGGAAATAAAATGAGCGACGGGGAT TTGATTTGGTGCATGTACTCAATCCCCCTCCCCTCCCTCCTGTCCATCAT TCTCCCTCTCTCCCTCTCTCCCTCTCTCCCTCTTTACTTCCCTCCCTCCC TCCCTCTCTGTGCTCCCTCTGCCACTCTCTCACCTCTTCTCCTTCCCTCC CCCCCCCGCTCTCTCCAGGGCATCTTCGGTGATTATCCAGGCGAGCTAAA CGAGATCTGTCGGGAGGTTCAACTCTCGCTCGTCGGACAGACTATCATGT AAGAAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGAGCGAAAAAGAGG GCAAAATCGAAGGGGGTTAACACCTGGCTTGATCTCATACCGTACTCCCC CTTCCCTCCCCCCCTCCCTCCCTCCCTCCCTCTATCCCTCCCTCTCTCCC CCTCCCAGCTTCCTGGCCATGTTCTTCCAGATGATCTGCTGCCTCCGCGT CGTCCTCACCAACGAAGGTCCCGTCCGTCCTCCTCACGAGACACGGTGCA TGTCCTGCGCATACCGGCAAGAAAGCGAGGGTCTGTTATCCTTTGTGCGG CAGCCCACCATTATGGGGTCTCTGTCCATGTACGCACGGCCCTCCTCCTT CTCACCCTCGCATAAAGCGTCACCGTATCGATTGAGGCCGGGGGAGGGTG AGGGGGGGGGAGCGATGGACCGACCGTTATTGTCGGAGTGGGGGAACAGC AGTGAAGAGAGCGAGGAGGACACGCGAGAGGAGAGGGGAAGGAGGAGGGT TGGAAAGAGGAGGGGGGGGGGGGCGAATGGATGGAGGGAGGACGGAGCAG TGTTGACGGATGATCTGGCCAGGGAAGTGGGCTATGCTGAGGAGGAAGAG AGGGCGTGAGGAGGGGGGGAGGGAGGGGAGGAGGGAAGGGGGAGTACGTA AAGTGTACATAGCTGGCAACTTGGAACCAAAGTAATTAACCCAA
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Coding sequence (CDS) from alignment at chr7:1106941..1110284-

>NO07G03980.1 ID=NO07G03980.1|Name=NO07G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at chr7:1106941..1110284- (Nannochloropsis oceanica)
ATGCCGTTCCGGCTCAATCGCTGGGGCGGGGTTCACAATGAAGAGGTGGA
TAGGAAAGCCATCATGGGGTTGAAAATCTTGCTGCTGGTCGCAATTCCAA
CCGTCATGGCCTCGACGGTTTTTGCCGGCATGTACGCCTGGATCCAAGGG
CGGCAGTACGGATACACAGTCGAAGATTGGCAACGGTGCCTGGTCGCCCC
CAACAAAGGAGGCTTTGGCGTTGGGGACCAGACTCTCTTCACGGGATCAG
CGGCGACGTTCGCCATGAAGGCCATCGTCTTTCTCATCCTCTCCTTCAAC
GGCGTCAATGCCGGGCTGATGGACCACGACATGCTGCCCTACGCTCTCTT
TGTCTCCTTTTCAGGCCTCCTGGGAATGACGATCTATCGCGAATCGTCCC
CTATTCAACCTGAGCCTCGTGCCATGAGCGTCACTCTCGTCACGCTCACA
AAATTCATCCATCCCCACATGTATGCCGATTTCCCCGTGTATCAAGCTCA
GCCTGACCCGAGTCTGTGTGTGCATGCCTATCACTTTAATCTGGCCTTCT
TGGTGTCACAATACATCATGCTTCTGTTGGCCGTCGGGCTTTTTTCGATT
GCCGTTTACACGCTCGTGTATTCCCCGAGGGATTATCTCGACACGCGGCT
GGATGGTTCTAGGAATGCCATGTTGCTGGTACCTGTGATTATGACGGGTT
ATGTGCTTACCTTGCTGGCCAAGGAGATCGTGGCGGTGGACACGATGCAG
GTCCTCCAAGATTCCCAGCTAGGCTACATGTTCATGTTCAAGAAAGCCGA
TATGGATGTGATATCGATGACTATGATGGTCACATGCGGTGCTGTCTTGG
TCGGCTCCTTCCACGAGTGCAAGAACAAGTTCAGATTAGCCTCTTTCATG
GCGTTTTTGCACGTCCTCATCTCCCTCCCCGTCATGGCGGGGACCTTCGC
AGCTTACGACTCATTGACTTACCCCTACAAGGGCAGCACGTACCGGCTCT
GGGAGACAGTATCCTGCAAGACGTACATCAACACCAAGAATCTGGGCATC
TTCGGTGATTATCCAGGCGAGCTAAACGAGATCTGTCGGGAGGTTCAACT
CTCGCTCGTCGGACAGACTATCATCTTCCTGGCCATGTTCTTCCAGATGA
TCTGCTGCCTCCGCGTCGTCCTCACCAACGAAGGTCCCGTCCGTCCTCCT
CACGAGACACGGTGCATGTCCTGCGCATACCGGCAAGAAAGCGAGGGTCT
GTTATCCTTTGTGCGGCAGCCCACCATTATGGGGTCTCTGTCCATGTACG
CACGGCCCTCCTCCTTCTCACCCTCGCATAAAGCGTCACCGTATCGATTG
AGGCCGGGGGAGGGTGAGGGGGGGGGAGCGATGGACCGACCGTTATTGTC
GGAGTGGGGGAACAGCAGTGAAGAGAGCGAGGAGGACACGCGAGAGGAGA
GGGGAAGGAGGAGGGTTGGAAAGAGGAGGGGGGGGGGGGCGAATGGATGG
AGGGAGGACGGAGCAGTGTTGACGGATGATCTGGCCAGGGAAGTGGGCTA
TGCTGAGGAGGAAGAGAGGGCGTGA
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Synonyms
Publications