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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1100115..1103246 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03960.1 vs.
Match: EWM26967.1 (tryptophan-rich sensory-like protein [Nannochloropsis gaditana]) HSP 1 Score: 227.3 bits (578), Expect = 6.300e-56 Identity = 129/225 (57.33%), Postives = 154/225 (68.44%), Query Frame = 0
Query: 9 SRCLCLVLMALMVAVHGFRLPTNMAQRHHITSRFSLLKPHTRSLATMPTV---------------VAPLRS--------DYLEDLP--VSNKGPPVQWGALGTWVVATALQFATITAVMAFMETAFIKLNASKQVSLWVVRAFFAFMSLRSRVFSILDNSRPSVEKEERKRILKKRPSWMPPAKAFPVIWISIGVLRTIASSLIYQTTNTLLAPALLALILHLSI 209
+ CL L L+ L+ A H FRL + + PH + P+ VAP RS +YL++LP S KGPP+QWGALGTW++ATALQFATI A M ME AF++ N SKQ S+W+VRAFFAFMSLRSRVFSILDNSRP+V E+RKR L+KRPSWMPPAKAFPVIWISIGVLRTIASSL+Y+TTNTLL+PALLA +LHL +
Sbjct: 15 ANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3025bp CCACCGCCTTCCGATAATTCTGCAACCTCCTAACCACTACAGGAAACAAA CCCAATTCCGCCGCAAATTGTGCATCCTCTCCCTCTTTCCCTCCCTCCAA AAACCGCGCGAGAGAAAGGAGGGCGAACGTCCGTTCATGCTCGTATGCCG GACCCTCCGTACCCGCCCATTTGATCAGCTGACTCACCGCAGGCAAAATA AGGGTAGGGTGTGCGGGCCCCAGATCAGTGAAGAAGGAAAGGATTGATAA ACGGTCTGACTGACGCGCATTTGATACATTTATGATCTCCTCCTCGTCGT TCTCGTCCACCTCTTTACTCTCCTCTTCCTCCTCGTCGTCGTCGTCCTCC TCCTCCTCCTCCAACGTCGTCGACCATTCCTCCCCTTCCTCTCCAACTTC CTCCACCCTCCTTCTCCTCCTCCTTCGCTTCCTCCCATCCCTCTTCTTCG GCCAGTCCTTCAGGCTTTCCAGCGCCGCCACCATTGGCATTACCCCATCC GCCGCGACGAACGCCTTCCATCCCTCCCTCCCTTCCTCAACAATATTATT CTCCGCCCCTCCTCCCATAACCTCGAATAACCCCAAGGCCTGAGCCACCC CGCAAACATCTCCTCTTGATTGTGTGTGTTTCAGGATCAAAGACGCTGCC TTTAAGAAAATCAATTTGGTCGCTTCTGTGGACATTTCGAACGTACAGAG CTGGGTTAGCAGGGGGGGAGGGGTGGAGGGAGGGACGGCGTGGTTTTGGG AAAGAATGATCGCAGAGTTGCGGCCCATGCAGGCAAGTTCGAGGGTGGTA AGAAGCTCAAGGGCGCAGGAGAGGGTGCGGAGGGCGCCACGCGAACGCGC CGTTTCGGCCGAAGCGTACTTGAGCAACGTCCAAATGCAGAGGACACGGG GGCTACCGTGGTTTTCTTTTCCCAGCTGTGCTGCTCCTCGGTCTTGCTTA CCGCGGACCTTTTTTCTCTGTTGCTTTCCGCTGCTCCCGCTGTGGCTGCT ACTGCCACCGTTGCCATGATCTCCACAACCCATCGGGCCAAGCAAATAAT CAATCACGGCATGCGGCCCATTAGGATGAAGACCATGCCCCTTCCCCGAG GAAGGAGGGACGGAAGAAGGGAATGGCACACGCATGCTTTGCTTGACTAG ACTCGTCAAGGCCAGCATTGCGTAGCCTGCCACGCAAGGTCGTGGGACTA TGGCACCGGACACATAGATGTCTTTCACCTCCTTAACGACCGCATAGAGC GTAGGGACGTACCAAGCGGCCTTTTCATACATACAAAGCCCGGAGGCGGT GCAAGAAAAATTTCCGAGATAGTGTGCTAAACGACAGCGTTCCCGTGGAT TTACGGTTTTGTCGGCGAAGCGTCTCAAGTCCCTTTCGAAGACTGGTTGG AGCTCATCTAAAGGCAGTCTCACGTACTCATCCGGAAGCAAGGCGTCGGG TCCAGTTATAGCTTGCCATGATTCAGCCACACAGGTTTGCTCTTCTGGTC GTGCTACAGCAATATCAAAGCCAGGCAGAGGAAACGCAGCGGCAGCGGCA GCCGCGGCCGCCGTGGTGCTGATAGGTGGGGCACCTGGGGCACCTGAAGG AGGGAGGCTGCTGGGAAGGATGCCTGGCGGCAGGAAACCCAGGGGACCTG AAGCGGTGCCGTGATGGTGATGGAGGCCTTGACCCTTCTTCCTGTGCCGG CCGTGACTCATCCCTCTCTAGGCTGTGTCGGAGGGTACCTGTGGAGTAGA TTGTGGGATGGTGAGTGGGGAGGTCGACTGCTGGACCCTGCCCTATAAAA TGCAGTGCCTGAAGCCAGCCGCGACGAAGGGGTATCCGGGCTGTACCAAG GATACGGTTAGATGTATCACGTGGGGATAGGTTCGATAGCGGTAAGGAAG GTATCGACATTCCGCCTTGCCTCGGGCTTCCAATTCGGCTATCAACCGCC GCGCGAAGCTCAGCGGACGAAAAAAACAACAAGTTAAAGATCCACACGAC TTAAGTCCACATCTACACAATACACAGGACGATGACAACCATGTTAACAT CTTTTTCCCGGTGCCTTTGCCTGGTGCTGATGGCCCTGATGGTGGCCGTG CATGGCTTCAGATTGCCAACCAACATGGCACAGAGGCATCACATTACCTC CCGTTTTTCCCTGCTTAAGCCTCACACGCGCTCCTTAGCCACCATGCCTA CGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCCCGTTTCC AACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGGTTGTGGC CACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTCATGGAAA CGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTGGGTGGTG CGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTTCCATCCT TGACAACTCGCGGCCAAGCGTTGAGAAAGAGGAAAGGAAGCGCATCCTCA AGAAACGCCCTTCCTGGATGCCACCGGCCAAGGCCTTTCCAGTCATCTGG ATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCTACCAAAC CACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTCCACCTCT CGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCGGCAAGGC GCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGAACGCCGT CGTTCAGTTCTATAACACCTTGCCTCTGGCGGGAAAGGTCCTGGCGCCTA GCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTATATGGAGG CTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGGAGTAAAA GAAGGGAAGGTGGACGGGAAGGGAGAAATGGAAACATGCTGTCGACGGGA GTTGAAGAAGATAAAATGAATTCGAAGAGAGAAGCAAGCTGGCGACGGCA GTGAAGAAAGAGAAGGTGAATTTAA back to topprotein sequence of NO07G03960.1 >NO07G03960.1-protein ID=NO07G03960.1-protein|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp MTTMLTSFSRCLCLVLMALMVAVHGFRLPTNMAQRHHITSRFSLLKPHTR SLATMPTVVAPLRSDYLEDLPVSNKGPPVQWGALGTWVVATALQFATITA VMAFMETAFIKLNASKQVSLWVVRAFFAFMSLRSRVFSILDNSRPSVEKE ERKRILKKRPSWMPPAKAFPVIWISIGVLRTIASSLIYQTTNTLLAPALL ALILHLSIGDTWNTITNVEDRQGASVPGVFLVWLSVVNAVVQFYNTLPLA GKVLAPSAVWITVANVLVFSIWRLNGSEPMYPFRKREE* back to topmRNA from alignment at chr7:1100115..1103246+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp|location=Sequence derived from alignment at chr7:1100115..1103246+ (Nannochloropsis oceanica) CCACCGCCTTCCGATAATTCTGCAACCTCCTAACCACTACAGGAAACAAA
CCCAATTCCGCCGCAAATTGTGCATCCTCTCCCTCTTTCCCTCCCTCCAA
AAACCGCGCGAGAGAAAGGAGGGCGAACGTCCGTTCATGCTCGTATGCCG
GACCCTCCGTACCCGCCCATTTGATCAGCTGACTCACCGCAGGCAAAATA
AGGGTAGGGTGTGCGGGCCCCAGATCAGTGAAGAAGGAAAGGATTGATAA
ACGGTCTGACTGACGCGCATTTGATACATTTATGATCTCCTCCTCGTCGT
TCTCGTCCACCTCTTTACTCTCCTCTTCCTCCTCGTCGTCGTCGTCCTCC
TCCTCCTCCTCCAACGTCGTCGACCATTCCTCCCCTTCCTCTCCAACTTC
CTCCACCCTCCTTCTCCTCCTCCTTCGCTTCCTCCCATCCCTCTTCTTCG
GCCAGTCCTTCAGGCTTTCCAGCGCCGCCACCATTGGCATTACCCCATCC
GCCGCGACGAACGCCTTCCATCCCTCCCTCCCTTCCTCAACAATATTATT
CTCCGCCCCTCCTCCCATAACCTCGAATAACCCCAAGGCCTGAGCCACCC
CGCAAACATCTCCTCTTGATTGTGTGTGTTTCAGGATCAAAGACGCTGCC
TTTAAGAAAATCAATTTGGTCGCTTCTGTGGACATTTCGAACGTACAGAG
CTGGGTTAGCAGGGGGGGAGGGGTGGAGGGAGGGACGGCGTGGTTTTGGG
AAAGAATGATCGCAGAGTTGCGGCCCATGCAGGCAAGTTCGAGGGTGGTA
AGAAGCTCAAGGGCGCAGGAGAGGGTGCGGAGGGCGCCACGCGAACGCGC
CGTTTCGGCCGAAGCGTACTTGAGCAACGTCCAAATGCAGAGGACACGGG
GGCTACCGTGGTTTTCTTTTCCCAGCTGTGCTGCTCCTCGGTCTTGCTTA
CCGCGGACCTTTTTTCTCTGTTGCTTTCCGCTGCTCCCGCTGTGGCTGCT
ACTGCCACCGTTGCCATGATCTCCACAACCCATCGGGCCAAGCAAATAAT
CAATCACGGCATGCGGCCCATTAGGATGAAGACCATGCCCCTTCCCCGAG
GAAGGAGGGACGGAAGAAGGGAATGGCACACGCATGCTTTGCTTGACTAG
ACTCGTCAAGGCCAGCATTGCGTAGCCTGCCACGCAAGGTCGTGGGACTA
TGGCACCGGACACATAGATGTCTTTCACCTCCTTAACGACCGCATAGAGC
GTAGGGACGTACCAAGCGGCCTTTTCATACATACAAAGCCCGGAGGCGGT
GCAAGAAAAATTTCCGAGATAGTGTGCTAAACGACAGCGTTCCCGTGGAT
TTACGGTTTTGTCGGCGAAGCGTCTCAAGTCCCTTTCGAAGACTGGTTGG
AGCTCATCTAAAGGCAGTCTCACGTACTCATCCGGAAGCAAGGCGTCGGG
TCCAGTTATAGCTTGCCATGATTCAGCCACACAGGTTTGCTCTTCTGGTC
GTGCTACAGCAATATCAAAGCCAGGCAGAGGAAACGCAGCGGCAGCGGCA
GCCGCGGCCGCCGTGGTGCTGATAGGTGGGGCACCTGGGGCACCTGAAGG
AGGGAGGCTGCTGGGAAGGATGCCTGGCGGCAGGAAACCCAGGGGACCTG
AAGCGGTGCCGTGATGGTGATGGAGGCCTTGACCCTTCTTCCTGTGCCGG
CCGTGACTCATCCCTCTCTAGGCTGTGTCGGAGGGTACCTGTGGAGTAGA
TTGTGGGATGGTGAGTGGGGAGGTCGACTGCTGGACCCTGCCCTATAAAA
TGCAGTGCCTGAAGCCAGCCGCGACGAAGGGGTATCCGGGCTGTACCAAG
GATACGGTTAGATGTATCACGTGGGGATAGGTTCGATAGCGGTAAGGAAG
GTATCGACATTCCGCCTTGCCTCGGGCTTCCAATTCGGCTATCAACCGCC
GCGCGAAGCTCAGCGGACGAAAAAAACAACAAGTTAAAGATCCACACGAC
TTAAGTCCACATCTACACAATACACAGGACGATGACAACCATGTTAACAT
CTTTTTCCCGGTGCCTTTGCCTGGTGCTGATGGCCCTGATGGTGGCCGTG
CATGGCTTCAGATTGCCAACCAACATGGCACAGAGGCATCACATTACCTC
CCGTTTTTCCCTGCTTAAGCCTCACACGCGCTCCTTAGCCACCATGCCTA
CGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCCCGTTTCC
AACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGGTTGTGGC
CACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTCATGGAAA
CGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTGGGTGGTG
CGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTTCCATCCT
TGACAACTCGCGGCCAAGCGTTGAGAAAGAGGAAAGGAAGCGCATCCTCA
AGAAACGCCCTTCCTGGATGTACGTAATGATCCTGTTAAGCTTTTTGTCT
TTGACCATGTTACACTTTAAATTTATCCTCCTTTCAATTATCTTTTTGTC
CACCCTCCCTCCTTTCTCGTCTTCAGGCCACCGGCCAAGGCCTTTCCAGT
CATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCT
ACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTC
CACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCG
GCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGA
ACGCCGTCGTTCAGTTCTATAACACCTTGCCTCTGGCGGGAAAGGTCCTG
GCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTAT
ATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGG
AGTAAAAGAAGGGAAGGTGGACGGGAAGGGAGAAATGGAAACATGCTGTC
GACGGGAGTTGAAGAAGATAAAATGAATTCGAAGAGAGAAGCAAGCTGGC
GACGGCAGTGAAGAAAGAGAAGGTGAATTTAA back to topCoding sequence (CDS) from alignment at chr7:1100115..1103246+ >NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr7:1100115..1103246+ (Nannochloropsis oceanica) ATGACAACCATGTTAACATCTTTTTCCCGGTGCCTTTGCCTGGTGCTGAT GGCCCTGATGGTGGCCGTGCATGGCTTCAGATTGCCAACCAACATGGCAC AGAGGCATCACATTACCTCCCGTTTTTCCCTGCTTAAGCCTCACACGCGC TCCTTAGCCACCATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCT CGAAGACCTCCCCGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGC TTGGGACCTGGGTTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCG GTCATGGCGTTCATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCA AGTGAGCTTGTGGGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGT CTCGAGTCTTTTCCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAAGAG GAAAGGAAGCGCATCCTCAAGAAACGCCCTTCCTGGATGCCACCGGCCAA GGCCTTTCCAGTCATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCT CCTCCCTCATCTACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTC GCACTCATCCTCCACCTCTCGATCGGAGATACATGGAACACCATCACGAA CGTTGAGGATCGGCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGC TCTCTGTGGTGAACGCCGTCGTTCAGTTCTATAACACCTTGCCTCTGGCG GGAAAGGTCCTGGCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTT GGTATTCTCTATATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCA GGAAGCGAGAGGAGTAA back to top
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