NO07G03960.1, NO07G03960.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03960.1
Unique NameNO07G03960.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length3025
Alignment locationchr7:1100115..1103246 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1100115..1103246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03960.1 vs.
Match: EWM26967.1 (tryptophan-rich sensory-like protein [Nannochloropsis gaditana])

HSP 1 Score: 227.3 bits (578), Expect = 6.300e-56
Identity = 129/225 (57.33%), Postives = 154/225 (68.44%), Query Frame = 0
Query:    9 SRCLCLVLMALMVAVHGFRLPTNMAQRHHITSRFSLLKPHTRSLATMPTV---------------VAPLRS--------DYLEDLP--VSNKGPPVQWGALGTWVVATALQFATITAVMAFMETAFIKLNASKQVSLWVVRAFFAFMSLRSRVFSILDNSRPSVEKEERKRILKKRPSWMPPAKAFPVIWISIGVLRTIASSLIYQTTNTLLAPALLALILHLSI 209
            + CL L L+ L+ A H FRL    +     +       PH   +   P+                VAP RS        +YL++LP   S KGPP+QWGALGTW++ATALQFATI A M  ME AF++ N SKQ S+W+VRAFFAFMSLRSRVFSILDNSRP+V  E+RKR L+KRPSWMPPAKAFPVIWISIGVLRTIASSL+Y+TTNTLL+PALLA +LHL +
Sbjct:   15 ANCLVLGLLLLLAATHAFRLKGLPSTTRQTSKLLLHPSPHQTLITGQPSRPTRITIAYLSSFARRVAPSRSMVVAASGTEYLDNLPSRASKKGPPMQWGALGTWILATALQFATIVAFMYGMEKAFLRFNLSKQASIWLVRAFFAFMSLRSRVFSILDNSRPTVAMEDRKRRLRKRPSWMPPAKAFPVIWISIGVLRTIASSLVYETTNTLLSPALLAFVLHLCV 239          
The following BLAST results are available for this feature:
BLAST of NO07G03960.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26967.16.300e-5657.33tryptophan-rich sensory-like protein [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03960NO07G03960Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03960.1NO07G03960.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03960.1.cds1NO07G03960.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03960.1.cds2NO07G03960.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3025bp
CCACCGCCTTCCGATAATTCTGCAACCTCCTAACCACTACAGGAAACAAA
CCCAATTCCGCCGCAAATTGTGCATCCTCTCCCTCTTTCCCTCCCTCCAA
AAACCGCGCGAGAGAAAGGAGGGCGAACGTCCGTTCATGCTCGTATGCCG
GACCCTCCGTACCCGCCCATTTGATCAGCTGACTCACCGCAGGCAAAATA
AGGGTAGGGTGTGCGGGCCCCAGATCAGTGAAGAAGGAAAGGATTGATAA
ACGGTCTGACTGACGCGCATTTGATACATTTATGATCTCCTCCTCGTCGT
TCTCGTCCACCTCTTTACTCTCCTCTTCCTCCTCGTCGTCGTCGTCCTCC
TCCTCCTCCTCCAACGTCGTCGACCATTCCTCCCCTTCCTCTCCAACTTC
CTCCACCCTCCTTCTCCTCCTCCTTCGCTTCCTCCCATCCCTCTTCTTCG
GCCAGTCCTTCAGGCTTTCCAGCGCCGCCACCATTGGCATTACCCCATCC
GCCGCGACGAACGCCTTCCATCCCTCCCTCCCTTCCTCAACAATATTATT
CTCCGCCCCTCCTCCCATAACCTCGAATAACCCCAAGGCCTGAGCCACCC
CGCAAACATCTCCTCTTGATTGTGTGTGTTTCAGGATCAAAGACGCTGCC
TTTAAGAAAATCAATTTGGTCGCTTCTGTGGACATTTCGAACGTACAGAG
CTGGGTTAGCAGGGGGGGAGGGGTGGAGGGAGGGACGGCGTGGTTTTGGG
AAAGAATGATCGCAGAGTTGCGGCCCATGCAGGCAAGTTCGAGGGTGGTA
AGAAGCTCAAGGGCGCAGGAGAGGGTGCGGAGGGCGCCACGCGAACGCGC
CGTTTCGGCCGAAGCGTACTTGAGCAACGTCCAAATGCAGAGGACACGGG
GGCTACCGTGGTTTTCTTTTCCCAGCTGTGCTGCTCCTCGGTCTTGCTTA
CCGCGGACCTTTTTTCTCTGTTGCTTTCCGCTGCTCCCGCTGTGGCTGCT
ACTGCCACCGTTGCCATGATCTCCACAACCCATCGGGCCAAGCAAATAAT
CAATCACGGCATGCGGCCCATTAGGATGAAGACCATGCCCCTTCCCCGAG
GAAGGAGGGACGGAAGAAGGGAATGGCACACGCATGCTTTGCTTGACTAG
ACTCGTCAAGGCCAGCATTGCGTAGCCTGCCACGCAAGGTCGTGGGACTA
TGGCACCGGACACATAGATGTCTTTCACCTCCTTAACGACCGCATAGAGC
GTAGGGACGTACCAAGCGGCCTTTTCATACATACAAAGCCCGGAGGCGGT
GCAAGAAAAATTTCCGAGATAGTGTGCTAAACGACAGCGTTCCCGTGGAT
TTACGGTTTTGTCGGCGAAGCGTCTCAAGTCCCTTTCGAAGACTGGTTGG
AGCTCATCTAAAGGCAGTCTCACGTACTCATCCGGAAGCAAGGCGTCGGG
TCCAGTTATAGCTTGCCATGATTCAGCCACACAGGTTTGCTCTTCTGGTC
GTGCTACAGCAATATCAAAGCCAGGCAGAGGAAACGCAGCGGCAGCGGCA
GCCGCGGCCGCCGTGGTGCTGATAGGTGGGGCACCTGGGGCACCTGAAGG
AGGGAGGCTGCTGGGAAGGATGCCTGGCGGCAGGAAACCCAGGGGACCTG
AAGCGGTGCCGTGATGGTGATGGAGGCCTTGACCCTTCTTCCTGTGCCGG
CCGTGACTCATCCCTCTCTAGGCTGTGTCGGAGGGTACCTGTGGAGTAGA
TTGTGGGATGGTGAGTGGGGAGGTCGACTGCTGGACCCTGCCCTATAAAA
TGCAGTGCCTGAAGCCAGCCGCGACGAAGGGGTATCCGGGCTGTACCAAG
GATACGGTTAGATGTATCACGTGGGGATAGGTTCGATAGCGGTAAGGAAG
GTATCGACATTCCGCCTTGCCTCGGGCTTCCAATTCGGCTATCAACCGCC
GCGCGAAGCTCAGCGGACGAAAAAAACAACAAGTTAAAGATCCACACGAC
TTAAGTCCACATCTACACAATACACAGGACGATGACAACCATGTTAACAT
CTTTTTCCCGGTGCCTTTGCCTGGTGCTGATGGCCCTGATGGTGGCCGTG
CATGGCTTCAGATTGCCAACCAACATGGCACAGAGGCATCACATTACCTC
CCGTTTTTCCCTGCTTAAGCCTCACACGCGCTCCTTAGCCACCATGCCTA
CGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCCCGTTTCC
AACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGGTTGTGGC
CACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTCATGGAAA
CGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTGGGTGGTG
CGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTTCCATCCT
TGACAACTCGCGGCCAAGCGTTGAGAAAGAGGAAAGGAAGCGCATCCTCA
AGAAACGCCCTTCCTGGATGCCACCGGCCAAGGCCTTTCCAGTCATCTGG
ATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCTACCAAAC
CACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTCCACCTCT
CGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCGGCAAGGC
GCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGAACGCCGT
CGTTCAGTTCTATAACACCTTGCCTCTGGCGGGAAAGGTCCTGGCGCCTA
GCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTATATGGAGG
CTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGGAGTAAAA
GAAGGGAAGGTGGACGGGAAGGGAGAAATGGAAACATGCTGTCGACGGGA
GTTGAAGAAGATAAAATGAATTCGAAGAGAGAAGCAAGCTGGCGACGGCA
GTGAAGAAAGAGAAGGTGAATTTAA
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protein sequence of NO07G03960.1

>NO07G03960.1-protein ID=NO07G03960.1-protein|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MTTMLTSFSRCLCLVLMALMVAVHGFRLPTNMAQRHHITSRFSLLKPHTR
SLATMPTVVAPLRSDYLEDLPVSNKGPPVQWGALGTWVVATALQFATITA
VMAFMETAFIKLNASKQVSLWVVRAFFAFMSLRSRVFSILDNSRPSVEKE
ERKRILKKRPSWMPPAKAFPVIWISIGVLRTIASSLIYQTTNTLLAPALL
ALILHLSIGDTWNTITNVEDRQGASVPGVFLVWLSVVNAVVQFYNTLPLA
GKVLAPSAVWITVANVLVFSIWRLNGSEPMYPFRKREE*
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mRNA from alignment at chr7:1100115..1103246+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=mRNA|length=3132bp|location=Sequence derived from alignment at chr7:1100115..1103246+ (Nannochloropsis oceanica)
CCACCGCCTTCCGATAATTCTGCAACCTCCTAACCACTACAGGAAACAAA CCCAATTCCGCCGCAAATTGTGCATCCTCTCCCTCTTTCCCTCCCTCCAA AAACCGCGCGAGAGAAAGGAGGGCGAACGTCCGTTCATGCTCGTATGCCG GACCCTCCGTACCCGCCCATTTGATCAGCTGACTCACCGCAGGCAAAATA AGGGTAGGGTGTGCGGGCCCCAGATCAGTGAAGAAGGAAAGGATTGATAA ACGGTCTGACTGACGCGCATTTGATACATTTATGATCTCCTCCTCGTCGT TCTCGTCCACCTCTTTACTCTCCTCTTCCTCCTCGTCGTCGTCGTCCTCC TCCTCCTCCTCCAACGTCGTCGACCATTCCTCCCCTTCCTCTCCAACTTC CTCCACCCTCCTTCTCCTCCTCCTTCGCTTCCTCCCATCCCTCTTCTTCG GCCAGTCCTTCAGGCTTTCCAGCGCCGCCACCATTGGCATTACCCCATCC GCCGCGACGAACGCCTTCCATCCCTCCCTCCCTTCCTCAACAATATTATT CTCCGCCCCTCCTCCCATAACCTCGAATAACCCCAAGGCCTGAGCCACCC CGCAAACATCTCCTCTTGATTGTGTGTGTTTCAGGATCAAAGACGCTGCC TTTAAGAAAATCAATTTGGTCGCTTCTGTGGACATTTCGAACGTACAGAG CTGGGTTAGCAGGGGGGGAGGGGTGGAGGGAGGGACGGCGTGGTTTTGGG AAAGAATGATCGCAGAGTTGCGGCCCATGCAGGCAAGTTCGAGGGTGGTA AGAAGCTCAAGGGCGCAGGAGAGGGTGCGGAGGGCGCCACGCGAACGCGC CGTTTCGGCCGAAGCGTACTTGAGCAACGTCCAAATGCAGAGGACACGGG GGCTACCGTGGTTTTCTTTTCCCAGCTGTGCTGCTCCTCGGTCTTGCTTA CCGCGGACCTTTTTTCTCTGTTGCTTTCCGCTGCTCCCGCTGTGGCTGCT ACTGCCACCGTTGCCATGATCTCCACAACCCATCGGGCCAAGCAAATAAT CAATCACGGCATGCGGCCCATTAGGATGAAGACCATGCCCCTTCCCCGAG GAAGGAGGGACGGAAGAAGGGAATGGCACACGCATGCTTTGCTTGACTAG ACTCGTCAAGGCCAGCATTGCGTAGCCTGCCACGCAAGGTCGTGGGACTA TGGCACCGGACACATAGATGTCTTTCACCTCCTTAACGACCGCATAGAGC GTAGGGACGTACCAAGCGGCCTTTTCATACATACAAAGCCCGGAGGCGGT GCAAGAAAAATTTCCGAGATAGTGTGCTAAACGACAGCGTTCCCGTGGAT TTACGGTTTTGTCGGCGAAGCGTCTCAAGTCCCTTTCGAAGACTGGTTGG AGCTCATCTAAAGGCAGTCTCACGTACTCATCCGGAAGCAAGGCGTCGGG TCCAGTTATAGCTTGCCATGATTCAGCCACACAGGTTTGCTCTTCTGGTC GTGCTACAGCAATATCAAAGCCAGGCAGAGGAAACGCAGCGGCAGCGGCA GCCGCGGCCGCCGTGGTGCTGATAGGTGGGGCACCTGGGGCACCTGAAGG AGGGAGGCTGCTGGGAAGGATGCCTGGCGGCAGGAAACCCAGGGGACCTG AAGCGGTGCCGTGATGGTGATGGAGGCCTTGACCCTTCTTCCTGTGCCGG CCGTGACTCATCCCTCTCTAGGCTGTGTCGGAGGGTACCTGTGGAGTAGA TTGTGGGATGGTGAGTGGGGAGGTCGACTGCTGGACCCTGCCCTATAAAA TGCAGTGCCTGAAGCCAGCCGCGACGAAGGGGTATCCGGGCTGTACCAAG GATACGGTTAGATGTATCACGTGGGGATAGGTTCGATAGCGGTAAGGAAG GTATCGACATTCCGCCTTGCCTCGGGCTTCCAATTCGGCTATCAACCGCC GCGCGAAGCTCAGCGGACGAAAAAAACAACAAGTTAAAGATCCACACGAC TTAAGTCCACATCTACACAATACACAGGACGATGACAACCATGTTAACAT CTTTTTCCCGGTGCCTTTGCCTGGTGCTGATGGCCCTGATGGTGGCCGTG CATGGCTTCAGATTGCCAACCAACATGGCACAGAGGCATCACATTACCTC CCGTTTTTCCCTGCTTAAGCCTCACACGCGCTCCTTAGCCACCATGCCTA CGGTTGTGGCTCCACTGCGCTCCGACTACCTCGAAGACCTCCCCGTTTCC AACAAGGGTCCGCCCGTGCAATGGGGTGCGCTTGGGACCTGGGTTGTGGC CACGGCATTGCAATTTGCCACCATAACGGCGGTCATGGCGTTCATGGAAA CGGCATTCATCAAGTTGAATGCATCCAAGCAAGTGAGCTTGTGGGTGGTG CGAGCCTTCTTTGCCTTCATGAGTTTGAGGTCTCGAGTCTTTTCCATCCT TGACAACTCGCGGCCAAGCGTTGAGAAAGAGGAAAGGAAGCGCATCCTCA AGAAACGCCCTTCCTGGATGTACGTAATGATCCTGTTAAGCTTTTTGTCT TTGACCATGTTACACTTTAAATTTATCCTCCTTTCAATTATCTTTTTGTC CACCCTCCCTCCTTTCTCGTCTTCAGGCCACCGGCCAAGGCCTTTCCAGT CATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCTCCTCCCTCATCT ACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTCGCACTCATCCTC CACCTCTCGATCGGAGATACATGGAACACCATCACGAACGTTGAGGATCG GCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGCTCTCTGTGGTGA ACGCCGTCGTTCAGTTCTATAACACCTTGCCTCTGGCGGGAAAGGTCCTG GCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTTGGTATTCTCTAT ATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCAGGAAGCGAGAGG AGTAAAAGAAGGGAAGGTGGACGGGAAGGGAGAAATGGAAACATGCTGTC GACGGGAGTTGAAGAAGATAAAATGAATTCGAAGAGAGAAGCAAGCTGGC GACGGCAGTGAAGAAAGAGAAGGTGAATTTAA
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Coding sequence (CDS) from alignment at chr7:1100115..1103246+

>NO07G03960.1 ID=NO07G03960.1|Name=NO07G03960.1|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at chr7:1100115..1103246+ (Nannochloropsis oceanica)
ATGACAACCATGTTAACATCTTTTTCCCGGTGCCTTTGCCTGGTGCTGAT
GGCCCTGATGGTGGCCGTGCATGGCTTCAGATTGCCAACCAACATGGCAC
AGAGGCATCACATTACCTCCCGTTTTTCCCTGCTTAAGCCTCACACGCGC
TCCTTAGCCACCATGCCTACGGTTGTGGCTCCACTGCGCTCCGACTACCT
CGAAGACCTCCCCGTTTCCAACAAGGGTCCGCCCGTGCAATGGGGTGCGC
TTGGGACCTGGGTTGTGGCCACGGCATTGCAATTTGCCACCATAACGGCG
GTCATGGCGTTCATGGAAACGGCATTCATCAAGTTGAATGCATCCAAGCA
AGTGAGCTTGTGGGTGGTGCGAGCCTTCTTTGCCTTCATGAGTTTGAGGT
CTCGAGTCTTTTCCATCCTTGACAACTCGCGGCCAAGCGTTGAGAAAGAG
GAAAGGAAGCGCATCCTCAAGAAACGCCCTTCCTGGATGCCACCGGCCAA
GGCCTTTCCAGTCATCTGGATTTCCATCGGTGTTCTCCGCACCATCGCCT
CCTCCCTCATCTACCAAACCACCAATACCCTTCTCGCCCCCGCTCTTCTC
GCACTCATCCTCCACCTCTCGATCGGAGATACATGGAACACCATCACGAA
CGTTGAGGATCGGCAAGGCGCCTCCGTTCCGGGTGTCTTTCTGGTGTGGC
TCTCTGTGGTGAACGCCGTCGTTCAGTTCTATAACACCTTGCCTCTGGCG
GGAAAGGTCCTGGCGCCTAGCGCGGTATGGATCACCGTGGCCAATGTGTT
GGTATTCTCTATATGGAGGCTGAATGGATCGGAACCTATGTATCCTTTCA
GGAAGCGAGAGGAGTAA
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Synonyms
Publications