NO07G03920.1, NO07G03920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03920.1
Unique NameNO07G03920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2025
Alignment locationchr7:1091497..1094177 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1091497..1094177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03920.1 vs.
Match: EWM26969.1 (hypothetical protein Naga_101386g2 [Nannochloropsis gaditana])

HSP 1 Score: 268.5 bits (685), Expect = 2.800e-68
Identity = 171/314 (54.46%), Postives = 206/314 (65.61%), Query Frame = 0 
Query:   46 MAAQEEMPALRQRLQEEAHMLANETLPRLNADKRGTLAVTIRDVRNVLPPPSSPSKAVAPEEDEEGREEEEEEERTEGDVDEEGEALLNGEDESSTQHHHHHHNHLHKNLRFLVEVVPGTVVASEEGEDQVEVEEVGGTASFPLLSLEAKIVVHFGPRLEHYVRVPLHNRYKESELAQLSDWHASAAVQEEDTETETPGVEDLTGVPAVQLLLKFSRKNKEEVARVTEKLKSLQEEMAALGREEGE-----------------------EEEGEE--EGGGGSRQLRVLREFIKGVEGLGEIAGEVAGEEARRR 335
            MAAQE+   LRQRLQE+ H LANE LP LNAD+ GTL VT+RDVRNVL PP+    AV PEE E+                E+GEALLNG          H HN+ HKNLRFLVEV P T V +EEGE QVEVE++GG A+FPL+SLEAK+VVHFG RLEH+V+VPLHNRY+ESEL QLSDWHASAAV+ ++TETETPGVEDLT VPAV+L+ KF R+N+ EV RV E+L+ LQEE+  LG+ EGE                       E+E EE  E   GSR L + R  +  +  +  + G+V G   RRR
Sbjct:    1 MAAQEDAGTLRQRLQEKIHELANEKLPTLNADRGGTLHVTVRDVRNVLTPPTV---AVTPEEAEDDAASRP---------GEDGEALLNGHTSL------HAHNYSHKNLRFLVEVSPSTAVMTEEGEAQVEVEDLGGIATFPLMSLEAKVVVHFGARLEHFVQVPLHNRYRESELGQLSDWHASAAVEGKETETETPGVEDLTNVPAVRLVFKFERRNRGEVQRVMEELQKLQEEVGRLGKGEGEGRAGVGKKGGVRTGRKGGIQSVDEDEDEEGREDASGSRVLSLWRWAVVPMIFIIRVGGQVGGLVWRRR 296
The following BLAST results are available for this feature:
BLAST of NO07G03920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26969.12.800e-6854.46hypothetical protein Naga_101386g2 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03920NO07G03920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03920.1NO07G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03920.1.cds1NO07G03920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03920.1.cds2NO07G03920.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03920.1.cds3NO07G03920.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03920.1 ID=NO07G03920.1|Name=NO07G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2025bp
ATGGGAGCTTGTCGGCGAGCTGTTGACGAGTGTCTCAGGCTGTGTGGTCA
TCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGGCCCTCGCATATTGTCT
TGACATCTCGGACTCAGCACCCCCACCACGAGCTCATGGCTGCCCAGGAG
GAGATGCCAGCGTTGCGGCAGCGCTTGCAGGAGGAAGCTCACATGCTAGC
TAACGAGACCCTTCCTCGACTCAACGCCGACAAGCGCGGCACCCTCGCTG
TAACGATTCGAGATGTCCGTAACGTCCTTCCCCCTCCCTCTTCCCCTTCA
AAGGCCGTTGCCCCCGAGGAGGATGAGGAGGGAAGGGAGGAAGAAGAGGA
AGAGGAAAGAACAGAAGGCGACGTGGACGAGGAGGGCGAGGCACTACTAA
ATGGCGAGGACGAGAGCAGCACCCAGCACCACCACCACCATCACAATCAC
CTGCATAAAAACCTCCGTTTCCTGGTGGAGGTCGTGCCGGGGACGGTCGT
CGCGAGTGAGGAAGGGGAGGATCAGGTTGAGGTGGAGGAAGTGGGAGGCA
CTGCCTCCTTCCCCCTCTTATCACTGGAGGCGAAGATTGTCGTTCATTTC
GGTCCCCGGCTGGAGCATTACGTGAGGGTGCCGTTACACAACCGTTACAA
AGAGTCGGAGCTGGCCCAGTTGTCCGACTGGCATGCCTCGGCGGCGGTGC
AAGAGGAGGACACTGAGACGGAAACCCCCGGGGTGGAGGACTTGACGGGA
GTGCCCGCGGTGCAGCTGTTACTGAAATTTAGCAGAAAAAATAAGGAGGA
GGTGGCGAGGGTCACGGAGAAGTTGAAGAGTCTGCAGGAGGAGATGGCGG
CCTTGGGTAGGGAGGAGGGTGAGGAGGAGGAAGGCGAGGAAGAGGGGGGG
GGGGGAAGCCGGCAGTTGCGCGTCCTGCGGGAATTTATAAAGGGAGTAGA
GGGGCTGGGAGAGATAGCGGGGGAGGTAGCGGGGGAGGAAGCTCGTCGTC
GTTGAAAAAAGGGAAGAGGGGAGGAATCAGGAGTGTGGATGACGAGGATG
ATGAGGAGGAAGAGGACGAGGGGGAGTATGCAGGAGGAGTGAGAGGGAGG
GTGTTGTCGTTGTGGCGGTGGGTGGTGATGCCCGTGTTCGTGGTGGTAAG
GGTGGGGAGGAGGGTTGGCGGGCTAATCTGGCACCGACGGGCTATTTTTA
TGTTTATCGGTGGAACCATGTTGTTTCATTTTAGGGGAGAGGACCTGGCG
GTGTAGGGAGGGAGGGAAGGAGGAAGGGGATGTACAGTGATGAAGTTGGG
GAGGAGGAGGCGAGGGCCACGGGAGGAAAGAAATGGAGGGCGGAAGGGAG
GGGAGGGAAAGAGGAGAAGGCTCTGGCTTATTGAGATGGGAGATGAGTAT
CCTCAACCTCTCATGGGGTTAGAGAAGAGGGGAGGAGGAGGAGGAGGAGG
AAGAGGAGGGAAAAGAAATTTGTCACGGATGGTCGGGGAGAAGAATAGAG
ACAAGTGAAGAGAATGAGACGGGAGAAGAGGATGAAGTTATTGATAGATA
CATTACAAGGTCGATTTAGGGCGAAAAAGAAGGAGTAGACCCAAATGACG
AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGAAGAA
GAAGAAGAAGGAGCAGGAGGAAAGCGCGGACAGAAATAGGATGAAAAGAA
AAATGAGGAGGAGGAAAAGAAAAAAAGAAGAGTGAGACCTAAATCAAGAT
CGAGATGGAGAAGGTGAAGGACCACGAAATAAAGGGAAGGAATTAAAAAA
AAGACAAAGATGAAAAGAACAAGAAGACAAAATAGTTGTGGTGGATTTCA
CCGTAAATTTCTCTTCTACATATATACATCACACTCTCCATCTCCACTTC
ACACACATGCACACTGCATGTTCTGTAGTTTGCCTCGGCAGCTGGCTCAT
AGTAAGACTCCCTTCTGCCTTGCTCCCTCTGCTTTCCATGGCCGCAAAAA
TCCGTGGTACGTCAAAACACCCACC
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protein sequence of NO07G03920.1

>NO07G03920.1-protein ID=NO07G03920.1-protein|Name=NO07G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MGACRRAVDECLRLCGHLLFFQLRLRMWPSHIVLTSRTQHPHHELMAAQE
EMPALRQRLQEEAHMLANETLPRLNADKRGTLAVTIRDVRNVLPPPSSPS
KAVAPEEDEEGREEEEEEERTEGDVDEEGEALLNGEDESSTQHHHHHHNH
LHKNLRFLVEVVPGTVVASEEGEDQVEVEEVGGTASFPLLSLEAKIVVHF
GPRLEHYVRVPLHNRYKESELAQLSDWHASAAVQEEDTETETPGVEDLTG
VPAVQLLLKFSRKNKEEVARVTEKLKSLQEEMAALGREEGEEEEGEEEGG
GGSRQLRVLREFIKGVEGLGEIAGEVAGEEARRR*
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mRNA from alignment at chr7:1091497..1094177-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03920.1 ID=NO07G03920.1|Name=NO07G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=2681bp|location=Sequence derived from alignment at chr7:1091497..1094177- (Nannochloropsis oceanica)
ATGGGAGCTTGTCGGCGAGCTGTTGACGAGTGTCTCAGGCTGTGTGGTCA
TCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGGCCCTCGCATATTGTCT
TGACATCTCGGTAAGAACTCATGCCTCTATTTTTCCTCCACAGCGCAGAT
AGCTGTACTGCGTTGAACGTGTGAGACAGGGCCCGCGAGGGCCGCCTCGT
CCCCCCCCCCCCCCCACCAGCAGCAGCATCATCCAATCCAAGGATACTCC
CGAGCTCCAACTCGCCCACTCACATCATCCCCCACACACTTGCACAGGAC
TCAGCACCCCCACCACGAGCTCATGGCTGCCCAGGAGGAGATGCCAGCGT
TGCGGCAGCGCTTGCAGGTATGTCTGCGAAAGAGAGAGGAGGGATTGTAG
TGGAGGAGGGCGGTGCCTGACTACCCTTCTGATCATGGTCTGCGCTTTGC
GAAGTATGCGCCAGAGTCCTGGCCCCTTTATCATGTCACAATGGGGCCTC
TGATATGATTGCTTCGAGGTCTGCGTTGCGGCTGGGGCTCGCGAAGCGGC
ACTGATGCGGTGACGACCAGGTGGAGGGCTGGCTCTCAGCATGCATGTGA
CACGTTTCTTCCTGGCTTATTGCATCATTTTCCGTCCTATGCTTAAAATA
TTTCCCGCGGCACATTTCGTCGAATGGTCGAACAATCCATATACCCGCTG
ACATGAAAGCATCAGCGCTTGTCTTCGGAAAGTCATGATGTTTTCACTTT
TTTCTCCGTATCGTCATCCGTCTTACATGCCCCTCTCTCTCTCCCTCCCC
CCTCTCTCTCTCCCCGCTTACACAAACAACTAATAGGAGGAAGCTCACAT
GCTAGCTAACGAGACCCTTCCTCGACTCAACGCCGACAAGCGCGGCACCC
TCGCTGTAACGATTCGAGATGTCCGTAACGTCCTTCCCCCTCCCTCTTCC
CCTTCAAAGGCCGTTGCCCCCGAGGAGGATGAGGAGGGAAGGGAGGAAGA
AGAGGAAGAGGAAAGAACAGAAGGCGACGTGGACGAGGAGGGCGAGGCAC
TACTAAATGGCGAGGACGAGAGCAGCACCCAGCACCACCACCACCATCAC
AATCACCTGCATAAAAACCTCCGTTTCCTGGTGGAGGTCGTGCCGGGGAC
GGTCGTCGCGAGTGAGGAAGGGGAGGATCAGGTTGAGGTGGAGGAAGTGG
GAGGCACTGCCTCCTTCCCCCTCTTATCACTGGAGGCGAAGATTGTCGTT
CATTTCGGTCCCCGGCTGGAGCATTACGTGAGGGTGCCGTTACACAACCG
TTACAAAGAGTCGGAGCTGGCCCAGTTGTCCGACTGGCATGCCTCGGCGG
CGGTGCAAGAGGAGGACACTGAGACGGAAACCCCCGGGGTGGAGGACTTG
ACGGGAGTGCCCGCGGTGCAGCTGTTACTGAAATTTAGCAGAAAAAATAA
GGAGGAGGTGGCGAGGGTCACGGAGAAGTTGAAGAGTCTGCAGGAGGAGA
TGGCGGCCTTGGGTAGGGAGGAGGGTGAGGAGGAGGAAGGCGAGGAAGAG
GGGGGGGGGGGAAGCCGGCAGTTGCGCGTCCTGCGGGAATTTATAAAGGG
AGTAGAGGGGCTGGGAGAGATAGCGGGGGAGGTAGCGGGGGAGGAAGCTC
GTCGTCGTTGAAAAAAGGGAAGAGGGGAGGAATCAGGAGTGTGGATGACG
AGGATGATGAGGAGGAAGAGGACGAGGGGGAGTATGCAGGAGGAGTGAGA
GGGAGGGTGTTGTCGTTGTGGCGGTGGGTGGTGATGCCCGTGTTCGTGGT
GGTAAGGGTGGGGAGGAGGGTTGGCGGGCTAATCTGGCACCGACGGGCTA
TTTTTATGTTTATCGGTGGAACCATGTTGTTTCATTTTAGGGGAGAGGAC
CTGGCGGTGTAGGGAGGGAGGGAAGGAGGAAGGGGATGTACAGTGATGAA
GTTGGGGAGGAGGAGGCGAGGGCCACGGGAGGAAAGAAATGGAGGGCGGA
AGGGAGGGGAGGGAAAGAGGAGAAGGCTCTGGCTTATTGAGATGGGAGAT
GAGTATCCTCAACCTCTCATGGGGTTAGAGAAGAGGGGAGGAGGAGGAGG
AGGAGGAAGAGGAGGGAAAAGAAATTTGTCACGGATGGTCGGGGAGAAGA
ATAGAGACAAGTGAAGAGAATGAGACGGGAGAAGAGGATGAAGTTATTGA
TAGATACATTACAAGGTCGATTTAGGGCGAAAAAGAAGGAGTAGACCCAA
ATGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAA
GAAGAAGAAGAAGAAGGAGCAGGAGGAAAGCGCGGACAGAAATAGGATGA
AAAGAAAAATGAGGAGGAGGAAAAGAAAAAAAGAAGAGTGAGACCTAAAT
CAAGATCGAGATGGAGAAGGTGAAGGACCACGAAATAAAGGGAAGGAATT
AAAAAAAAGACAAAGATGAAAAGAACAAGAAGACAAAATAGTTGTGGTGG
ATTTCACCGTAAATTTCTCTTCTACATATATACATCACACTCTCCATCTC
CACTTCACACACATGCACACTGCATGTTCTGTAGTTTGCCTCGGCAGCTG
GCTCATAGTAAGACTCCCTTCTGCCTTGCTCCCTCTGCTTTCCATGGCCG
CAAAAATCCGTGGTACGTCAAAACACCCACC
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Coding sequence (CDS) from alignment at chr7:1091497..1094177-

>NO07G03920.1 ID=NO07G03920.1|Name=NO07G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr7:1091497..1094177- (Nannochloropsis oceanica)
ATGGGAGCTTGTCGGCGAGCTGTTGACGAGTGTCTCAGGCTGTGTGGTCA
TCTCCTTTTCTTTCAGCTCAGACTCCGTATGTGGCCCTCGCATATTGTCT
TGACATCTCGGACTCAGCACCCCCACCACGAGCTCATGGCTGCCCAGGAG
GAGATGCCAGCGTTGCGGCAGCGCTTGCAGGAGGAAGCTCACATGCTAGC
TAACGAGACCCTTCCTCGACTCAACGCCGACAAGCGCGGCACCCTCGCTG
TAACGATTCGAGATGTCCGTAACGTCCTTCCCCCTCCCTCTTCCCCTTCA
AAGGCCGTTGCCCCCGAGGAGGATGAGGAGGGAAGGGAGGAAGAAGAGGA
AGAGGAAAGAACAGAAGGCGACGTGGACGAGGAGGGCGAGGCACTACTAA
ATGGCGAGGACGAGAGCAGCACCCAGCACCACCACCACCATCACAATCAC
CTGCATAAAAACCTCCGTTTCCTGGTGGAGGTCGTGCCGGGGACGGTCGT
CGCGAGTGAGGAAGGGGAGGATCAGGTTGAGGTGGAGGAAGTGGGAGGCA
CTGCCTCCTTCCCCCTCTTATCACTGGAGGCGAAGATTGTCGTTCATTTC
GGTCCCCGGCTGGAGCATTACGTGAGGGTGCCGTTACACAACCGTTACAA
AGAGTCGGAGCTGGCCCAGTTGTCCGACTGGCATGCCTCGGCGGCGGTGC
AAGAGGAGGACACTGAGACGGAAACCCCCGGGGTGGAGGACTTGACGGGA
GTGCCCGCGGTGCAGCTGTTACTGAAATTTAGCAGAAAAAATAAGGAGGA
GGTGGCGAGGGTCACGGAGAAGTTGAAGAGTCTGCAGGAGGAGATGGCGG
CCTTGGGTAGGGAGGAGGGTGAGGAGGAGGAAGGCGAGGAAGAGGGGGGG
GGGGGAAGCCGGCAGTTGCGCGTCCTGCGGGAATTTATAAAGGGAGTAGA
GGGGCTGGGAGAGATAGCGGGGGAGGTAGCGGGGGAGGAAGCTCGTCGTC
GTTGA
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Synonyms
Publications