NO07G03880.1, NO07G03880.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03880.1
Unique NameNO07G03880.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1869
Alignment locationchr7:1081196..1083642 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1081196..1083642 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03880.1 vs.
Match: XP_005852771.1 (histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526]; EKU23062.1 histone deacetylase superfamily protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 406.4 bits (1043), Expect = 1.200e-109
Identity = 244/426 (57.28%), Postives = 296/426 (69.48%), Query Frame = 0 
Query:   16 SVGAAVIV---TVIEELLGQPLPQLTKLGTTTVTTTPRASAFPPPPPPPPPPPPPPPPPPPPPPHPLLILSPLACLDHDIPGHFERPARVISILNALKQYAPPLSLP--PTSGAPPLLPPSAFLLSNDDSPLATREQLTRFHSLQHIETLFSLFARSKAAVEDEGEEDGEEGGKKGGKEGGRARRASERVGPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVFCVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHGNGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGEGSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDYWWLTRGVMEVAREGGRR-GRGRGRGGNVRCCRCWRE 436
            +VGAA +     VIEE LG+PLP+L K                 PP P   P    PPP P PP+PLL++SP ACL H+IPGHFERPAR+ +IL+AL    PP  LP  P   +PP LPPSAFLLS+ D P AT EQL RFH+ QH+  L SLFA S+        ++                 +S  + P +Y   +++DID DT VCPGTEEA LRAAGAACRGV+EV+EGRAE+V+C+VRPPGHHATP ++MGFCF N+ GVAAMHARA++GV+RVA+LDPDVHHGNGTQD    DPDLFYASTHVGYGFYPG+G +++ +GRE RLVNVPFREGEGSS++FRQAW +EIFP L+ F+PELI++SMGFDA  EDPLGEMEL  +D+ W +R   EV R GGR+ GR  GR G       WRE
Sbjct:   12 TVGAATVGGVNAVIEEWLGKPLPRLCK---------------GVPPCPQARPSFRLPPPEPLPPYPLLVISPPACLKHNIPGHFERPARLTAILHALH---PPSRLPSLPPPHSPPSLPPSAFLLSDADCPRATHEQLARFHTTQHLAHLASLFAESQTLAATSQVQEPSHLDPS----------SSPHLFP-SYPPASLIDIDGDTTVCPGTEEATLRAAGAACRGVEEVMEGRAESVWCLVRPPGHHATPSQSMGFCFVNHAGVAAMHARARYGVRRVAVLDPDVHHGNGTQDGFRDDPDLFYASTHVGYGFYPGTGSRKDAKGREDRLVNVPFREGEGSSEKFRQAWAEEIFPKLRKFQPELIILSMGFDAVAEDPLGEMELRPEDFEWFSR---EVRRVGGRKGGREGGREGCEGGVEYWRE 405
The following BLAST results are available for this feature:
BLAST of NO07G03880.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005852771.11.200e-10957.28histone deacetylase superfamily protein, partial [... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03880NO07G03880Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03880.1NO07G03880.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03880.1.cds1NO07G03880.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03880.1.cds2NO07G03880.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03880.1.cds3NO07G03880.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03880.1 ID=NO07G03880.1|Name=NO07G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=1869bp
ACAACTAGAAGAGCCAGCGGAGCCACGAATGTGAAGCTCCTTGAGCTTCA
TCATCATGAACGCGTTTCTCAAAGCAAAGGGCAGCAACGAGGAGACGGCG
TCGGTAGGCGCGGCGGTTATTGTAACCGTAATTGAGGAGCTTTTGGGTCA
ACCCCTTCCCCAGCTGACTAAGCTTGGCACGACCACCGTCACCACCACTC
CTCGTGCTTCCGCTTTTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCTCCTCATCCT
CTCTCCTCTCGCCTGCCTGGACCATGACATCCCCGGACATTTCGAACGTC
CTGCCCGTGTCATCTCCATCCTGAACGCCCTCAAGCAATACGCGCCCCCT
CTCTCCCTTCCTCCCACCTCTGGCGCTCCCCCCCTCCTTCCTCCCTCCGC
CTTCCTTCTCTCCAATGATGATTCCCCCCTCGCTACGCGCGAGCAATTGA
CAAGGTTCCACTCTCTACAGCACATTGAAACTCTCTTCTCCCTGTTTGCG
CGATCCAAAGCCGCTGTGGAAGATGAAGGAGAAGAGGACGGCGAGGAAGG
GGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGGCCAGGCGGGCCAGTGAAC
GTGTCGGGCCTAAGAATTACAATGACAATGCCATCTTGGACATAGATGCG
GACACTTTCGTGTGCCCTGGCACGGAGGAAGCGGCCTTGCGCGCAGCGGG
AGCAGCGTGTAGGGGCGTCGATGAAGTCCTTGAGGGGAGGGCCGAAACGG
TTTTCTGTGTTGTTCGTCCCCCCGGCCACCATGCGACACCTGACAGGGCC
ATGGGATTTTGTTTCTTCAACAATGTAGGCGTGGCGGCCATGCATGCACG
GGCGAAGCACGGGGTGAAACGGGTGGCGATCTTGGATCCAGACGTGCACC
ATGGCAACGGCACGCAGGATTTCACCGTCCTCGATCCGGATCTTTTTTAT
GCCTCTACGCACGTCGGCTACGGCTTCTACCCCGGTAGCGGGCACAAGGA
GGAGGAGGAAGGGAGGGAAGGTAGGCTCGTGAATGTACCTTTCAGGGAAG
GGGAGGGGAGCAGCCAGCGCTTTAGGCAGGCGTGGGAGAAGGAGATTTTC
CCCACGTTGAAGGCGTTTGAGCCGGAGTTGATCTTAATGTCGATGGGCTT
CGACGCGGCGAGGGAGGACCCGCTGGGGGAGATGGAGCTGGAGGCGAAGG
ATTACTGGTGGTTGACACGTGGCGTGATGGAGGTGGCGAGGGAGGGGGGA
AGGAGGGGGAGGGGGAGGGGGAGGGGAGGAAATGTAAGGTGTTGTCGGTG
TTGGAGGGAGGTTACCACCTGGGGGCGCTGGGGCTGTGTGGAGTAGCCCA
TGTGAAGGCTTTACTGGGCTTGCCGTTTGACGAGGGAGCGGGGGAGGAGA
CGGGGGAGGAGGAGGAGCCGTTGGAGGCGTTGCACTTGTTGCCGCCAGTG
GTGGATAGGGAGGAGGAGGAGCTGCTGGAGCGGATGGCGGGGGTGTCGTT
GGACGGGGGGAAGGAGAGGGGGTGAATGATGAGAGAGAGAAGGAGACGTG
CACGTGGCGCTTGCCAGGATATGAAGAGGAGAAACGAAAGGGAGGATAGG
AAAGGAGGAAGACTAGAGATTGGGAAAGGGGAGACGGAGGAGATGACTCC
GGAGAGGAAGAGAAAAGGCTAGGAAGATGACCATACGCAGCAAAGCAGGA
TTTATGCATGTTTTCATGTACATCCACACATATATATATGTACATGAGGC
GCAATCCAAGCACGCATAGGTGAAAACGTATAAAAGAAAGATGCACTTAC
GCACCAGCCCAATTAGGAA
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protein sequence of NO07G03880.1

>NO07G03880.1-protein ID=NO07G03880.1-protein|Name=NO07G03880.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MNAFLKAKGSNEETASVGAAVIVTVIEELLGQPLPQLTKLGTTTVTTTPR
ASAFPPPPPPPPPPPPPPPPPPPPPPHPLLILSPLACLDHDIPGHFERPA
RVISILNALKQYAPPLSLPPTSGAPPLLPPSAFLLSNDDSPLATREQLTR
FHSLQHIETLFSLFARSKAAVEDEGEEDGEEGGKKGGKEGGRARRASERV
GPKNYNDNAILDIDADTFVCPGTEEAALRAAGAACRGVDEVLEGRAETVF
CVVRPPGHHATPDRAMGFCFFNNVGVAAMHARAKHGVKRVAILDPDVHHG
NGTQDFTVLDPDLFYASTHVGYGFYPGSGHKEEEEGREGRLVNVPFREGE
GSSQRFRQAWEKEIFPTLKAFEPELILMSMGFDAAREDPLGEMELEAKDY
WWLTRGVMEVAREGGRRGRGRGRGGNVRCCRCWREVTTWGRWGCVE*
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mRNA from alignment at chr7:1081196..1083642-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03880.1 ID=NO07G03880.1|Name=NO07G03880.1|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at chr7:1081196..1083642- (Nannochloropsis oceanica)
ACAACTAGAAGAGCCAGCGGAGCCACGAATGTGAAGCTCCTTGAGCTTCA
TCATCATGAACGCGTTTCTCAAAGCAAAGGGCAGCAACGAGGAGACGGCG
TCGGTAGGCGCGGCGGTTATTGTAACCGTAATTGAGGAGCTTTTGGTAAG
TAACTTGCCGGCCACACGACGTCAGAAGCGTCGTGTGGTTGTGTGTGTGT
GTGTGTGGTGGTGGAGCGCTACGAGGTGAAAGTGCTGCATGACTCAGAAC
CCCTCCATCCCAGAGAGCGTCCGCTATAATTACCATCATCATGCTCAAGA
CCGTTCGTGACCCGCACACGCATGAACCACCACTCTGCACCGCCAGAAAC
ATCGCAACGACGGGTAGCGGGACGGCGTGGCAACAATTGCTGGATTCTCC
CTCCACTGAGTCTTATCTTTTGGCTCTCTCCCTCTGTCTTTTTCCCTTCC
CCCGAGCCTGCCAGTCCTCCATGTTTTATATCCACCTGCCTCGGCGTACC
TCCTCATTCATCACTTCTGACTTGTCTTTTGCCCCCTACTGCCCACTTCA
GGGTCAACCCCTTCCCCAGCTGACTAAGCTTGGCACGACCACCGTCACCA
CCACTCCTCGTGCTTCCGCTTTTCCTCCCCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCTCCT
CATCCTCTCTCCTCTCGCCTGCCTGGACCATGACATCCCCGGACATTTCG
AACGTCCTGCCCGTGTCATCTCCATCCTGAACGCCCTCAAGCAATACGCG
CCCCCTCTCTCCCTTCCTCCCACCTCTGGCGCTCCCCCCCTCCTTCCTCC
CTCCGCCTTCCTTCTCTCCAATGATGATTCCCCCCTCGCTACGCGCGAGC
AATTGACAAGGTTCCACTCTCTACAGCACATTGAAACTCTCTTCTCCCTG
TTTGCGCGATCCAAAGCCGCTGTGGAAGATGAAGGAGAAGAGGACGGCGA
GGAAGGGGGGAAGAAGGGAGGGAAGGAGGGAGGGAGGGCCAGGCGGGCCA
GTGAACGTGTCGGGCCTAAGAATTACAATGACAATGCCATCTTGGACATA
GATGCGGACACTTTCGTGTGCCCTGGCACGGAGGAAGCGGCCTTGCGCGC
AGCGGGAGCAGCGTGTAGGGGCGTCGATGAAGTCCTTGAGGGGAGGGCCG
AAACGGTTTTCTGTGTTGTTCGTCCCCCCGGCCACCATGCGACACCTGAC
AGGGCCATGGGATTTTGTTTCTTCAACAATGTAGGCGTGGCGGCCATGCA
TGCACGGGCGAAGCACGGGGTGAAACGGGTGGCGATCTTGGATCCAGGTA
TAAACAATCAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAATGGGATA
GCCACATGTGACCGCGACTACGGATTTACACGTCGCATCATTGACTCTTC
CCTCCTTCCTATTTTTCTTCCTCTCTTCCCTCCCTCCCTCCCTCTCTCCC
TCCCTCCCTCGCTTTCTAGACGTGCACCATGGCAACGGCACGCAGGATTT
CACCGTCCTCGATCCGGATCTTTTTTATGCCTCTACGCACGTCGGCTACG
GCTTCTACCCCGGTAGCGGGCACAAGGAGGAGGAGGAAGGGAGGGAAGGT
AGGCTCGTGAATGTACCTTTCAGGGAAGGGGAGGGGAGCAGCCAGCGCTT
TAGGCAGGCGTGGGAGAAGGAGATTTTCCCCACGTTGAAGGCGTTTGAGC
CGGAGTTGATCTTAATGTCGATGGGCTTCGACGCGGCGAGGGAGGACCCG
CTGGGGGAGATGGAGCTGGAGGCGAAGGATTACTGGTGGTTGACACGTGG
CGTGATGGAGGTGGCGAGGGAGGGGGGAAGGAGGGGGAGGGGGAGGGGGA
GGGGAGGAAATGTAAGGTGTTGTCGGTGTTGGAGGGAGGTTACCACCTGG
GGGCGCTGGGGCTGTGTGGAGTAGCCCATGTGAAGGCTTTACTGGGCTTG
CCGTTTGACGAGGGAGCGGGGGAGGAGACGGGGGAGGAGGAGGAGCCGTT
GGAGGCGTTGCACTTGTTGCCGCCAGTGGTGGATAGGGAGGAGGAGGAGC
TGCTGGAGCGGATGGCGGGGGTGTCGTTGGACGGGGGGAAGGAGAGGGGG
TGAATGATGAGAGAGAGAAGGAGACGTGCACGTGGCGCTTGCCAGGATAT
GAAGAGGAGAAACGAAAGGGAGGATAGGAAAGGAGGAAGACTAGAGATTG
GGAAAGGGGAGACGGAGGAGATGACTCCGGAGAGGAAGAGAAAAGGCTAG
GAAGATGACCATACGCAGCAAAGCAGGATTTATGCATGTTTTCATGTACA
TCCACACATATATATATGTACATGAGGCGCAATCCAAGCACGCATAGGTG
AAAACGTATAAAAGAAAGATGCACTTACGCACCAGCCCAATTAGGAA
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Coding sequence (CDS) from alignment at chr7:1081196..1083642-

>NO07G03880.1 ID=NO07G03880.1|Name=NO07G03880.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr7:1081196..1083642- (Nannochloropsis oceanica)
ATGAACGCGTTTCTCAAAGCAAAGGGCAGCAACGAGGAGACGGCGTCGGT
AGGCGCGGCGGTTATTGTAACCGTAATTGAGGAGCTTTTGGGTCAACCCC
TTCCCCAGCTGACTAAGCTTGGCACGACCACCGTCACCACCACTCCTCGT
GCTTCCGCTTTTCCTCCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCACCCCCTCCTCATCCTCTCTC
CTCTCGCCTGCCTGGACCATGACATCCCCGGACATTTCGAACGTCCTGCC
CGTGTCATCTCCATCCTGAACGCCCTCAAGCAATACGCGCCCCCTCTCTC
CCTTCCTCCCACCTCTGGCGCTCCCCCCCTCCTTCCTCCCTCCGCCTTCC
TTCTCTCCAATGATGATTCCCCCCTCGCTACGCGCGAGCAATTGACAAGG
TTCCACTCTCTACAGCACATTGAAACTCTCTTCTCCCTGTTTGCGCGATC
CAAAGCCGCTGTGGAAGATGAAGGAGAAGAGGACGGCGAGGAAGGGGGGA
AGAAGGGAGGGAAGGAGGGAGGGAGGGCCAGGCGGGCCAGTGAACGTGTC
GGGCCTAAGAATTACAATGACAATGCCATCTTGGACATAGATGCGGACAC
TTTCGTGTGCCCTGGCACGGAGGAAGCGGCCTTGCGCGCAGCGGGAGCAG
CGTGTAGGGGCGTCGATGAAGTCCTTGAGGGGAGGGCCGAAACGGTTTTC
TGTGTTGTTCGTCCCCCCGGCCACCATGCGACACCTGACAGGGCCATGGG
ATTTTGTTTCTTCAACAATGTAGGCGTGGCGGCCATGCATGCACGGGCGA
AGCACGGGGTGAAACGGGTGGCGATCTTGGATCCAGACGTGCACCATGGC
AACGGCACGCAGGATTTCACCGTCCTCGATCCGGATCTTTTTTATGCCTC
TACGCACGTCGGCTACGGCTTCTACCCCGGTAGCGGGCACAAGGAGGAGG
AGGAAGGGAGGGAAGGTAGGCTCGTGAATGTACCTTTCAGGGAAGGGGAG
GGGAGCAGCCAGCGCTTTAGGCAGGCGTGGGAGAAGGAGATTTTCCCCAC
GTTGAAGGCGTTTGAGCCGGAGTTGATCTTAATGTCGATGGGCTTCGACG
CGGCGAGGGAGGACCCGCTGGGGGAGATGGAGCTGGAGGCGAAGGATTAC
TGGTGGTTGACACGTGGCGTGATGGAGGTGGCGAGGGAGGGGGGAAGGAG
GGGGAGGGGGAGGGGGAGGGGAGGAAATGTAAGGTGTTGTCGGTGTTGGA
GGGAGGTTACCACCTGGGGGCGCTGGGGCTGTGTGGAGTAG
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Synonyms
Publications