NO07G03840.1, NO07G03840.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03840.1
Unique NameNO07G03840.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2226
Alignment locationchr7:1073290..1075608 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1073290..1075608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO07G03840.1 vs.
Match: EWM26984.1 (emopamil binding protein [Nannochloropsis gaditana])

HSP 1 Score: 299.3 bits (765), Expect = 1.000e-77
Identity = 143/225 (63.56%), Postives = 175/225 (77.78%), Query Frame = 0 
Query:   13 IPLNVVDKITLVWFILDAFTHLSIEAGYVFLALGPTANQSSSYMAFIWREYARADSRWAGRDPTILSIEILTAFLLGPLCLLAAWAIYTRRPYRHLVQLSISLFELYGGWMTFMPDIISGAHSLALHDPLLLWVHLVFMNGLWILLPILLAWESGVYLIHACTIAKT-----EESGKRREHVG---GLPSIGWFWMIAGIMVVYVVLVPLILLVSADRPPAVIPG 230
            +PL  +D++   WF+LDA THLSIE GYV LALGPTA  S S+M F+WREYARADSRWAGRDP I++IE++T FLLGP CLLAAWAIY RRPYRH++QL ISL ELYGGWMTF PD+++GA SLAL DP LL VHL+FMNGLW+L+P +LAWESG  L+ AC++AK      +E G +RE  G   G+PS+ WFW++A  MVVYV+LVPLIL+ +A  PP    G
Sbjct:   20 VPLTYIDRVAFSWFVLDAITHLSIELGYVLLALGPTARASPSFMGFLWREYARADSRWAGRDPNIIAIELVTVFLLGPACLLAAWAIYHRRPYRHVLQLGISLLELYGGWMTFAPDVLAGAPSLALQDPFLLSVHLIFMNGLWVLVPAVLAWESGATLVGACSLAKVGASGGKEGGSKREERGQAPGIPSVHWFWVLAMAMVVYVILVPLILVATAAPPPVEASG 244
The following BLAST results are available for this feature:
BLAST of NO07G03840.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26984.11.000e-7763.56emopamil binding protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03840NO07G03840Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03840.1NO07G03840.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03840.1.cds1NO07G03840.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03840.1.cds2NO07G03840.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03840.1 ID=NO07G03840.1|Name=NO07G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2226bp
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCGCGTTGCTCTTGCTCGATT
CGTAAGGATCCTGCCAAGAGATCTAAGCATCCTCCTAGGCCCAGCAAGAG
GGCTGCGTCGTCCCCTACCAAGCTTTGGGTTGAGGATGATAGCCCGCCCT
CCGTCGTACAAGTGCTGCCCTCATCCTCGTCGTCGGTGAGAGTGGCGGCA
GTTTGAGCTGAAAGATCGCGGTTGAAAACACCGGGCTTGCAGAGAGGAAA
GCGGCCATTACCTTCTTGCTGGTGTAGGTGGTGGTGCTGCTCTTGCTGCG
GCTTTTCGGTCTCCGAGCAACTGGCCTCTGCGACAGAGCGAGATGGCGGA
GTGTTGTTGTTCCCCCCCCGAGGGTTCATCGGGGCATGGGACGTGATCAG
GTCGCTGACCGGCATGCCAGTCGTTGCACTGTATGCCTTATTCCGGTGTA
AGGTCGGCGGGGCGCTCTGCATTCAATGTCCAGGGAGCGATGGACTAGTC
GACAATGTTTTTGCTCGCACTTGTGCAGCCCTTCCGCTCGCTTGCCACGC
ACGTCTCTCGCCCTGCCTCACCTAAGGAGAAGCGAGGGGCTATCTACACA
TGTTGGTTTTTGTGAGGTGACGAGGGTCTTGTATCCCTGTAAGATGAGTG
GGGATAGGCATCGTGAGAGCGTAAAGCGGACGAATTATCGGCAAAGCAAA
CACCACCGCGACCGCGCTGACGAATGAGCGAGAAGCTGCGGGGGGTGGGC
AGACGCACCCCCATCGCGCCCCCGCCTCGCTTGTCCGAAAGCGTGCGTGT
GTTGGTGAGGAATAGATGATCGTAAAAAATGGTGGTCTTGAGAGCTTTCC
ATGCGCGGCAACCAACGTTGCTCACCGTGACGATACTTTCCTCTTTGACT
GACTTGTCCTGAACTCGTTGATGCCTAAAGTTGGTGGGCGAGCTCTTCCA
AAAGCCTTCATTCCTCACAACCTCAAGAAGCCGTCAAGCCGCCAAGGGAA
AGGGGGCGCGGTCAATGTGCGATGGGACCGAACAATACCGTGTGCAATGT
TTGAGAATTTGTGGGTGAAGTGTAATTTTCGAGGGATAAAGGAAACTACA
CGCGAGTAACAAAGAGCTGCGTGTTGATAGCCTATGGTAAGACAGAACAT
TTGTTTGGCCCTCCACGTGTTGTTCTGGAGGAGGTCGTCATCAAGCTTGG
GTCGGCGAGTATGCCCCGCCCCATCTTGACATCCGTTTGCGTCCTTTTAC
ACGATAAAGAGTGATACGAGCTCACATTTATAAATGTTGACTAAAAGGCC
CCTGAATCGGCTAGAAAACATGGTTTAAGTCTTTTTGCGATTTTAAAAAA
AAACTTCTTTTATGGTCCGCTACGTAAACTCATATAGCATACACCCCTAT
GAAACCCAGCAGTTTCTAGGCTTCGTAGCAAATGGTGACGACGCGCAGTA
GAAGCTTGTCCATCAAAATTCCTTTGAATGTGGTGGATAAGATAACGTTG
GTCTGGTTCATCCTTGATGCCTTCACACACCTCTCCATCGAAGCTGGCTA
TGTGTTTCTCGCTCTTGGCCCCACCGCCAATCAATCCTCTTCCTATATGG
CCTTCATTTGGCGGGAATACGCACGGGCCGACTCTCGCTGGGCCGGACGG
GACCCTACCATTCTCTCGATCGAGATATTGACTGCCTTCCTCCTGGGACC
TCTCTGTTTGCTCGCCGCCTGGGCGATATATACCCGCCGGCCCTACAGAC
ACCTGGTTCAACTTTCTATTTCACTCTTTGAGCTGTATGGCGGTTGGATG
ACTTTTATGCCTGATATTATATCAGGGGCACACTCCTTGGCATTGCATGA
TCCCCTGCTTTTGTGGGTGCATTTAGTATTTATGAATGGGCTTTGGATTC
TTTTACCCATACTTCTGGCTTGGGAAAGTGGAGTGTACCTGATCCATGCA
TGCACGATCGCCAAGACCGAAGAAAGTGGAAAGAGGAGGGAACATGTGGG
TGGCTTGCCATCCATAGGGTGGTTTTGGATGATTGCAGGGATTATGGTAG
TATACGTGGTATTAGTGCCACTGATTTTGCTGGTCTCTGCGGACCGTCCA
CCGGCGGTCATACCAGGGATTAAGTGAAGGGCGAGTTGGAAGGGGGGAGG
AAGAGGGAATGCGAAGATACAAAGTACCACGATAGAGCCGTAAAGTAGAG
CATTGTACCAAGCGGGCTAGCAAGAG
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protein sequence of NO07G03840.1

>NO07G03840.1-protein ID=NO07G03840.1-protein|Name=NO07G03840.1|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MVTTRSRSLSIKIPLNVVDKITLVWFILDAFTHLSIEAGYVFLALGPTAN
QSSSYMAFIWREYARADSRWAGRDPTILSIEILTAFLLGPLCLLAAWAIY
TRRPYRHLVQLSISLFELYGGWMTFMPDIISGAHSLALHDPLLLWVHLVF
MNGLWILLPILLAWESGVYLIHACTIAKTEESGKRREHVGGLPSIGWFWM
IAGIMVVYVVLVPLILLVSADRPPAVIPGIK*
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mRNA from alignment at chr7:1073290..1075608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03840.1 ID=NO07G03840.1|Name=NO07G03840.1|organism=Nannochloropsis oceanica|type=mRNA|length=2319bp|location=Sequence derived from alignment at chr7:1073290..1075608- (Nannochloropsis oceanica)
CTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCGCGTTGCTCTTGCTCGATT
CGTAAGGATCCTGCCAAGAGATCTAAGCATCCTCCTAGGCCCAGCAAGAG
GGCTGCGTCGTCCCCTACCAAGCTTTGGGTTGAGGATGATAGCCCGCCCT
CCGTCGTACAAGTGCTGCCCTCATCCTCGTCGTCGGTGAGAGTGGCGGCA
GTTTGAGCTGAAAGATCGCGGTTGAAAACACCGGGCTTGCAGAGAGGAAA
GCGGCCATTACCTTCTTGCTGGTGTAGGTGGTGGTGCTGCTCTTGCTGCG
GCTTTTCGGTCTCCGAGCAACTGGCCTCTGCGACAGAGCGAGATGGCGGA
GTGTTGTTGTTCCCCCCCCGAGGGTTCATCGGGGCATGGGACGTGATCAG
GTCGCTGACCGGCATGCCAGTCGTTGCACTGTATGCCTTATTCCGGTGTA
AGGTCGGCGGGGCGCTCTGCATTCAATGTCCAGGGAGCGATGGACTAGTC
GACAATGTTTTTGCTCGCACTTGTGCAGCCCTTCCGCTCGCTTGCCACGC
ACGTCTCTCGCCCTGCCTCACCTAAGGAGAAGCGAGGGGCTATCTACACA
TGTTGGTTTTTGTGAGGTGACGAGGGTCTTGTATCCCTGTAAGATGAGTG
GGGATAGGCATCGTGAGAGCGTAAAGCGGACGAATTATCGGCAAAGCAAA
CACCACCGCGACCGCGCTGACGAATGAGCGAGAAGCTGCGGGGGGTGGGC
AGACGCACCCCCATCGCGCCCCCGCCTCGCTTGTCCGAAAGCGTGCGTGT
GTTGGTGAGGAATAGATGATCGTAAAAAATGGTGGTCTTGAGAGCTTTCC
ATGCGCGGCAACCAACGTTGCTCACCGTGACGATACTTTCCTCTTTGACT
GACTTGTCCTGAACTCGTTGATGCCTAAAGTTGGTGGGCGAGCTCTTCCA
AAAGCCTTCATTCCTCACAACCTCAAGAAGCCGTCAAGCCGCCAAGGGAA
AGGGGGCGCGGTCAATGTGCGATGGGACCGAACAATACCGTGTGCAATGT
TTGAGAATTTGTGGGTGAAGTGTAATTTTCGAGGGATAAAGGAAACTACA
CGCGAGTAACAAAGAGCTGCGTGTTGATAGCCTATGGTAAGACAGAACAT
TTGTTTGGCCCTCCACGTGTTGTTCTGGAGGAGGTCGTCATCAAGCTTGG
GTCGGCGAGTATGCCCCGCCCCATCTTGACATCCGTTTGCGTCCTTTTAC
ACGATAAAGAGTGATACGAGCTCACATTTATAAATGTTGACTAAAAGGCC
CCTGAATCGGCTAGAAAACATGGTTTAAGTCTTTTTGCGATTTTAAAAAA
AAACTTCTTTTATGGTCCGCTACGTAAACTCATATAGCATACACCCCTAT
GAAACCCAGCAGTTTCTAGGCTTCGTAGCAAATGGTGACGACGCGCAGTA
GAAGCTTGTCCATCAAAATTCCTTTGAATGTGGTGGATAAGGTAAGTAAG
AGCGATAGAAGAAAATGCGTGGCTCCCTTTTCCCCCTATACCTGTCTTGT
GCAAACTGACACGCTTTTACCGTCCACCACCCAGATAACGTTGGTCTGGT
TCATCCTTGATGCCTTCACACACCTCTCCATCGAAGCTGGCTATGTGTTT
CTCGCTCTTGGCCCCACCGCCAATCAATCCTCTTCCTATATGGCCTTCAT
TTGGCGGGAATACGCACGGGCCGACTCTCGCTGGGCCGGACGGGACCCTA
CCATTCTCTCGATCGAGATATTGACTGCCTTCCTCCTGGGACCTCTCTGT
TTGCTCGCCGCCTGGGCGATATATACCCGCCGGCCCTACAGACACCTGGT
TCAACTTTCTATTTCACTCTTTGAGCTGTATGGCGGTTGGATGACTTTTA
TGCCTGATATTATATCAGGGGCACACTCCTTGGCATTGCATGATCCCCTG
CTTTTGTGGGTGCATTTAGTATTTATGAATGGGCTTTGGATTCTTTTACC
CATACTTCTGGCTTGGGAAAGTGGAGTGTACCTGATCCATGCATGCACGA
TCGCCAAGACCGAAGAAAGTGGAAAGAGGAGGGAACATGTGGGTGGCTTG
CCATCCATAGGGTGGTTTTGGATGATTGCAGGGATTATGGTAGTATACGT
GGTATTAGTGCCACTGATTTTGCTGGTCTCTGCGGACCGTCCACCGGCGG
TCATACCAGGGATTAAGTGAAGGGCGAGTTGGAAGGGGGGAGGAAGAGGG
AATGCGAAGATACAAAGTACCACGATAGAGCCGTAAAGTAGAGCATTGTA
CCAAGCGGGCTAGCAAGAG
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Coding sequence (CDS) from alignment at chr7:1073290..1075608-

>NO07G03840.1 ID=NO07G03840.1|Name=NO07G03840.1|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at chr7:1073290..1075608- (Nannochloropsis oceanica)
ATGGTGACGACGCGCAGTAGAAGCTTGTCCATCAAAATTCCTTTGAATGT
GGTGGATAAGATAACGTTGGTCTGGTTCATCCTTGATGCCTTCACACACC
TCTCCATCGAAGCTGGCTATGTGTTTCTCGCTCTTGGCCCCACCGCCAAT
CAATCCTCTTCCTATATGGCCTTCATTTGGCGGGAATACGCACGGGCCGA
CTCTCGCTGGGCCGGACGGGACCCTACCATTCTCTCGATCGAGATATTGA
CTGCCTTCCTCCTGGGACCTCTCTGTTTGCTCGCCGCCTGGGCGATATAT
ACCCGCCGGCCCTACAGACACCTGGTTCAACTTTCTATTTCACTCTTTGA
GCTGTATGGCGGTTGGATGACTTTTATGCCTGATATTATATCAGGGGCAC
ACTCCTTGGCATTGCATGATCCCCTGCTTTTGTGGGTGCATTTAGTATTT
ATGAATGGGCTTTGGATTCTTTTACCCATACTTCTGGCTTGGGAAAGTGG
AGTGTACCTGATCCATGCATGCACGATCGCCAAGACCGAAGAAAGTGGAA
AGAGGAGGGAACATGTGGGTGGCTTGCCATCCATAGGGTGGTTTTGGATG
ATTGCAGGGATTATGGTAGTATACGTGGTATTAGTGCCACTGATTTTGCT
GGTCTCTGCGGACCGTCCACCGGCGGTCATACCAGGGATTAAGTGA
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Synonyms
Publications