NO07G03800.1, NO07G03800.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO07G03800.1
Unique Name	NO07G03800.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2066
Alignment location	chr7:1064221..1066827 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr7	genome	chr7:1064221..1066827 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO07G03800.1 vs.
Match: EWM26981.1 (26s proteasome non-atpase regulatory subunit 11 [Nannochloropsis gaditana])

HSP 1 Score: 739.2 bits (1907), Expect = 8.300e-210
Identity = 384/480 (80.00%), Postives = 432/480 (90.00%), Query Frame = 0

Query:    7 MAGADTMDISPGSGVEETKTSGESKRQTTTNANAAMEEEESKPDPLKEALEAAEEQAQTHPAQAIAAFHDVLHTPNRDDEVAQRIKEEAIYRLAKLHADAHGFREVMALLKDSNDYFALVPKAKTAKIVRTIIDIVTKVPNSVDLQVELCKEVVAWCIAQKRTFLRQRIESRLAALLFLRGDYTDALSLINKLLRELKKFDDKQLLVETHLIEARIDHALRNLPKAKAALTAARTAGNSIYVVPAMQAELDQMSGVLHCEEGDYKTSHSYFLEAFEAFDSLSDPRARKCLEYMMLCSILQGTPQEVSAVTSKHGLKYAGEGMSALVAIAAAAKARSLELFDGAREEYGGVLAGDLLMKHHVHIVYEQLLESNLLKIIEPFSCVEISHVASLINLPEKTVEKKLSQMILDDKILGTLDQGQGQLLVYEGSGLDKTYTHGLEVIGNLGMVVDSLFRRAQKMLHSGHVVGGVGGSGEGPVESA 487
            M    +M++S   GVEE+KT+ E K    TN NAAMEEEES PDPLKEALEAAEE AQ+HP++AI AFH +++TP+R+D+ AQR+KEEAIYRLAKLHADAH F+EVM LLK S+ +FA +PKAKTAKIVRTIIDIVTK+P+SVDLQV+LC+EVVAWCIAQKRTFLRQRIESRLA LL+ R DY+ AL+LI+KLLRELKKFDDKQLLVETHL+EARIDHALRNLPKAKAALTAARTAGNSIYVVPAMQAELDQMSGVLHCEEGDYKT+HSYFLEAFEAFDSLSD RA KCLEYMMLC +LQGTPQ+VSAVTSKHGLKYAG+GM+AL+AIAAAAK RSLE FD AR+ YGGVLA DLL+ HHVHIVYEQLLESNLLKIIEPFSCVEI HVA+LINLP+K+VE+KLSQMILDDK+ GTLDQG+GQLLVYE S LDKT++HGLE++GNLGMVVDSLFRRAQKM+H+GH   G GG GEG V SA
Sbjct:    1 MTAPASMEVS--GGVEESKTATEPKPSAPTNVNAAMEEEESLPDPLKEALEAAEELAQSHPSKAITAFHAIVNTPDREDDAAQRLKEEAIYRLAKLHADAHQFQEVMLLLKTSDVFFAQIPKAKTAKIVRTIIDIVTKIPDSVDLQVDLCREVVAWCIAQKRTFLRQRIESRLATLLYARADYSGALALISKLLRELKKFDDKQLLVETHLVEARIDHALRNLPKAKAALTAARTAGNSIYVVPAMQAELDQMSGVLHCEEGDYKTAHSYFLEAFEAFDSLSDLRAPKCLEYMMLCLVLQGTPQDVSAVTSKHGLKYAGDGMNALIAIAAAAKERSLEAFDAARKTYGGVLAQDLLLTHHVHIVYEQLLESNLLKIIEPFSCVEIEHVATLINLPQKSVERKLSQMILDDKLYGTLDQGKGQLLVYERSTLDKTFSHGLELVGNLGMVVDSLFRRAQKMVHAGHAREGGGGGGEGAVSSA 478

The following BLAST results are available for this feature:

BLAST of NO07G03800.1 vs.

BLAST of NO07G03800.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM26981.1	8.300e-210	80.00	26s proteasome non-atpase regulatory subunit 11 [N...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO07G03800	NO07G03800	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03800.1	NO07G03800.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO07G03800.1.cds1	NO07G03800.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G03800.1.cds2	NO07G03800.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO07G03800.1.cds3	NO07G03800.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr7:1064221..1066827-
coding sequence from alignment at chr7:1064221..1066827-

mRNA sequence

>NO07G03800.1 ID=NO07G03800.1|Name=NO07G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2066bp
TCATGGATAATACTTTCTTTTGTACTACCTACCATGCTGCCTTTGCAAAT
TGTTCGTTTTGGGGACTCAGCAGATGACGAGGACGAAAGGCTATATCGCA
AATTATTATCTCCTTGGTCACTTGTCTGCACAACTGCTTTCGCGGCGGTG
GCCTGAGAGCTTCATTACTTCACCTTTATATACCGAAGCAGGGAAAGTAT
GCAGTACACCTCTACAAAGTCGGTCTCAATTTACTGCAAGGACTCCATGC
CCTGCATTCCTCCACTTTTTTTTTTCTTTCAAGAGGGGACAAGGACGAGG
GGGGAGGTCACCGACGAGGATGTCGCTACTTCCCCCTCCAATCGCATCCG
TGCCTCCATGATGCTTCACAATCATCCAGTATTCAGTCCAAAATCTGTTG
GTCGCCCAATTTTATACTTTTACGCCTTAAAAGCGCACCTAAACCAATGC
AAGGTACCCTTTTCCACTCTCGCTGCCATCATCGCCAACATCCAGAATTC
TTCGAAGCAGTCCGTGCTCTTTCCTACATGCCCGATCAACCCCACACACA
CAGCCATCATCCACCACCCTACAAACTCCCATGCATATAGACATAAAAAT
GGCGGGGGCAGATACAATGGACATCTCCCCAGGCAGCGGGGTGGAGGAGA
CCAAAACGTCGGGAGAGTCCAAACGCCAAACTACGACGAATGCCAACGCG
GCGATGGAGGAAGAAGAAAGCAAGCCCGACCCCCTCAAGGAAGCTCTGGA
GGCGGCCGAGGAACAAGCGCAGACGCACCCTGCGCAAGCCATCGCCGCTT
TCCATGATGTCCTCCACACCCCCAACCGGGACGATGAAGTCGCCCAACGC
ATCAAGGAAGAAGCCATCTACCGCCTGGCCAAACTGCATGCCGACGCCCA
CGGCTTCCGCGAAGTCATGGCCCTGCTCAAGGATAGTAATGACTATTTTG
CCCTGGTTCCCAAGGCCAAGACAGCGAAGATCGTGAGGACAATAATCGAT
ATTGTCACTAAGGTTCCCAACTCGGTGGACCTGCAGGTGGAGCTGTGCAA
GGAGGTCGTCGCTTGGTGCATCGCCCAGAAACGGACCTTCCTGCGTCAAC
GCATCGAGTCCCGACTCGCAGCCCTCCTCTTCCTCCGCGGGGATTACACG
GACGCCCTCTCCCTGATCAATAAACTTTTGCGCGAACTCAAAAAATTCGA
CGACAAGCAATTGCTTGTGGAGACCCACCTGATCGAGGCGCGCATTGACC
ACGCCTTGCGCAACCTTCCCAAGGCCAAGGCCGCCCTGACCGCGGCCCGT
ACGGCAGGTAACTCCATCTACGTCGTCCCTGCTATGCAAGCCGAGCTGGA
CCAGATGTCGGGTGTGCTGCACTGCGAGGAAGGTGACTACAAGACGTCCC
ATTCCTATTTCCTGGAGGCATTTGAGGCCTTCGATTCCTTGTCGGATCCT
CGCGCACGCAAGTGCCTGGAGTACATGATGCTGTGCTCCATCTTGCAAGG
AACGCCCCAGGAGGTGTCGGCAGTGACGAGCAAGCACGGGCTGAAATACG
CGGGGGAGGGAATGAGTGCTCTAGTGGCGATAGCGGCCGCGGCGAAGGCG
CGAAGTTTGGAGCTATTCGACGGGGCAAGGGAGGAATATGGGGGGGTGTT
GGCGGGGGATTTGTTGATGAAGCACCACGTGCACATCGTGTATGAGCAGC
TGCTGGAGTCGAATCTGTTGAAGATTATTGAGCCCTTTTCGTGCGTGGAG
ATAAGTCATGTGGCGTCTCTCATCAACCTGCCGGAGAAGACGGTGGAAAA
GAAGTTGTCGCAGATGATTCTGGATGACAAGATATTGGGGACGTTGGACC
AGGGGCAGGGGCAGCTGCTGGTGTATGAGGGTAGTGGCTTGGATAAGACG
TACACGCATGGGTTGGAGGTGATTGGAAATTTGGGGATGGTTGTGGACAG
CTTGTTCAGGCGGGCGCAGAAAATGTTGCACTCAGGGCATGTGGTGGGAG
GGGTGGGAGGAAGTGGGGAAGGGCCGGTGGAGAGTGCGTAAGATTGAAGA
GGGTTTTTGTAGGGAC

protein sequence of NO07G03800.1

>NO07G03800.1-protein ID=NO07G03800.1-protein|Name=NO07G03800.1|organism=Nannochloropsis oceanica|type=polypeptide|length=487bp
MHIDIKMAGADTMDISPGSGVEETKTSGESKRQTTTNANAAMEEEESKPD
PLKEALEAAEEQAQTHPAQAIAAFHDVLHTPNRDDEVAQRIKEEAIYRLA
KLHADAHGFREVMALLKDSNDYFALVPKAKTAKIVRTIIDIVTKVPNSVD
LQVELCKEVVAWCIAQKRTFLRQRIESRLAALLFLRGDYTDALSLINKLL
RELKKFDDKQLLVETHLIEARIDHALRNLPKAKAALTAARTAGNSIYVVP
AMQAELDQMSGVLHCEEGDYKTSHSYFLEAFEAFDSLSDPRARKCLEYMM
LCSILQGTPQEVSAVTSKHGLKYAGEGMSALVAIAAAAKARSLELFDGAR
EEYGGVLAGDLLMKHHVHIVYEQLLESNLLKIIEPFSCVEISHVASLINL
PEKTVEKKLSQMILDDKILGTLDQGQGQLLVYEGSGLDKTYTHGLEVIGN
LGMVVDSLFRRAQKMLHSGHVVGGVGGSGEGPVESA*

mRNA from alignment at chr7:1064221..1066827-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO07G03800.1 ID=NO07G03800.1|Name=NO07G03800.1|organism=Nannochloropsis oceanica|type=mRNA|length=2607bp|location=Sequence derived from alignment at chr7:1064221..1066827- (Nannochloropsis oceanica)
TCATGGATAATACTTTCTTTTGTACTACCTACCATGCTGCCTTTGCAAAT
TGTTCGTTTTGGGGACTCAGCAGATGACGAGGACGAAAGGCTATATCGCA
AATTATTATCTCCTTGGTCACTTGTCTGCACAACTGCTTTCGCGGCGGTG
GCCTGAGAGCTTCATTACTTCACCTTTATATACCGAAGCAGGGAAAGTAT
GCAGTACACCTCTACAAAGTCGGTCTCAATTTACTGCAAGGACTCCATGC
CCTGCATTCCTCCACTTTTTTTTTTCTTTCAAGAGGGGACAAGGACGAGG
GGGGAGGTCACCGACGAGGATGTCGCTACTTCCCCCTCCAATCGCATCCG
TGCCTCCATGATGCTTCACAATCATCCAGTATTCAGTCCAAAATCTGTTG
GTCGCCCAATTTTATACTTTTACGCCTTAAAAGCGCACCTAAACCAATGC
AAGGTACCCTTTTCCACTCTCGCTGCCATCATCGCCAACATCCAGAATTC
TTCGAAGCAGTCCGTGCTCTTTCCTACATGCCCGATCAACCCCACACACA
CAGCCATCATCCACCACCCTACAAACTCCCATGCATATAGACATAAAAAT
GGCGGGGGCAGATACAATGGACATCTCCCCAGGCAGCGGGGTGGAGGAGA
CCAAAACGTCGGGAGAGTCCAAACGCCAAACTACGACGAATGCCAACGCG
GCGATGGTACGTTTTCAGGCTGTGTTTTTCAGTACATGCATCGAGGTTGT
ATGTCCTGAGTGTTGCGGAAGCTTTTTGTGAAAGTGATCAGTGTTTTAGG
AATGATGCCTGTACTTTTTGGGGGCTCTGCTTTGGCCGGCTCTCTGTCTC
TCTTCTTTCGCCTTTCCTTCAGACGTAGCCCCGGCGTTTTCATCATCTCT
CTGCACCTGCTGTCTGCAAGCAAGCCTAGCTCCTGAGCATTTTCAGCCTG
CACAGGCTCGCGTGTCTCTTTCTGTCTTCGTGCTCCTGCCACGTTCCATT
TCTTGGTGTCAAGTCTTTGTAAGGTCACACTTACGCACCTCTTCTCCCTT
CCATCCCTTTTCCCACCTCAACCAGGAGGAAGAAGAAAGCAAGCCCGACC
CCCTCAAGGAAGCTCTGGAGGCGGCCGAGGAACAAGCGCAGACGCACCCT
GCGCAAGCCATCGCCGCTTTCCATGATGTCCTCCACACCCCCAACCGGGA
CGATGAAGTCGCCCAACGCATCAAGGAAGAAGCCATCTACCGCCTGGCCA
AACTGCATGCCGACGCCCACGGCTTCCGCGAAGTCATGGCCCTGCTCAAG
GATAGTAATGACTATTTTGCCCTGGTTCCCAAGGCCAAGACAGCGAAGAT
CGTGAGGACAATAATCGATATTGTCACTAAGGTTCCCAACTCGGTGGACC
TGCAGGTGGAGCTGTGCAAGGAGGTAAGCGAAGGAAGGAGGAAGGAATGT
GGAGGGGATGGATGGGCGTGGGGATAATGCTGTGGATGACTACCATCAGC
GATATCAGATTGAGATATCATAAGGTGAAAATCGTTAAGGTGGGTGCACG
CTCATCTCCCTCCCTCCCTCCCTCCCTCTCTCCCTCCCTTTTTAGGTCGT
CGCTTGGTGCATCGCCCAGAAACGGACCTTCCTGCGTCAACGCATCGAGT
CCCGACTCGCAGCCCTCCTCTTCCTCCGCGGGGATTACACGGACGCCCTC
TCCCTGATCAATAAACTTTTGCGCGAACTCAAAAAATTCGACGACAAGCA
ATTGCTTGTGGAGACCCACCTGATCGAGGCGCGCATTGACCACGCCTTGC
GCAACCTTCCCAAGGCCAAGGCCGCCCTGACCGCGGCCCGTACGGCAGGT
AACTCCATCTACGTCGTCCCTGCTATGCAAGCCGAGCTGGACCAGATGTC
GGGTGTGCTGCACTGCGAGGAAGGTGACTACAAGACGTCCCATTCCTATT
TCCTGGAGGCATTTGAGGCCTTCGATTCCTTGTCGGATCCTCGCGCACGC
AAGTGCCTGGAGTACATGATGCTGTGCTCCATCTTGCAAGGAACGCCCCA
GGAGGTGTCGGCAGTGACGAGCAAGCACGGGCTGAAATACGCGGGGGAGG
GAATGAGTGCTCTAGTGGCGATAGCGGCCGCGGCGAAGGCGCGAAGTTTG
GAGCTATTCGACGGGGCAAGGGAGGAATATGGGGGGGTGTTGGCGGGGGA
TTTGTTGATGAAGCACCACGTGCACATCGTGTATGAGCAGCTGCTGGAGT
CGAATCTGTTGAAGATTATTGAGCCCTTTTCGTGCGTGGAGATAAGTCAT
GTGGCGTCTCTCATCAACCTGCCGGAGAAGACGGTGGAAAAGAAGTTGTC
GCAGATGATTCTGGATGACAAGATATTGGGGACGTTGGACCAGGGGCAGG
GGCAGCTGCTGGTGTATGAGGGTAGTGGCTTGGATAAGACGTACACGCAT
GGGTTGGAGGTGATTGGAAATTTGGGGATGGTTGTGGACAGCTTGTTCAG
GCGGGCGCAGAAAATGTTGCACTCAGGGCATGTGGTGGGAGGGGTGGGAG
GAAGTGGGGAAGGGCCGGTGGAGAGTGCGTAAGATTGAAGAGGGTTTTTG
TAGGGAC

Coding sequence (CDS) from alignment at chr7:1064221..1066827-

>NO07G03800.1 ID=NO07G03800.1|Name=NO07G03800.1|organism=Nannochloropsis oceanica|type=CDS|length=1461bp|location=Sequence derived from alignment at chr7:1064221..1066827- (Nannochloropsis oceanica)
ATGCATATAGACATAAAAATGGCGGGGGCAGATACAATGGACATCTCCCC
AGGCAGCGGGGTGGAGGAGACCAAAACGTCGGGAGAGTCCAAACGCCAAA
CTACGACGAATGCCAACGCGGCGATGGAGGAAGAAGAAAGCAAGCCCGAC
CCCCTCAAGGAAGCTCTGGAGGCGGCCGAGGAACAAGCGCAGACGCACCC
TGCGCAAGCCATCGCCGCTTTCCATGATGTCCTCCACACCCCCAACCGGG
ACGATGAAGTCGCCCAACGCATCAAGGAAGAAGCCATCTACCGCCTGGCC
AAACTGCATGCCGACGCCCACGGCTTCCGCGAAGTCATGGCCCTGCTCAA
GGATAGTAATGACTATTTTGCCCTGGTTCCCAAGGCCAAGACAGCGAAGA
TCGTGAGGACAATAATCGATATTGTCACTAAGGTTCCCAACTCGGTGGAC
CTGCAGGTGGAGCTGTGCAAGGAGGTCGTCGCTTGGTGCATCGCCCAGAA
ACGGACCTTCCTGCGTCAACGCATCGAGTCCCGACTCGCAGCCCTCCTCT
TCCTCCGCGGGGATTACACGGACGCCCTCTCCCTGATCAATAAACTTTTG
CGCGAACTCAAAAAATTCGACGACAAGCAATTGCTTGTGGAGACCCACCT
GATCGAGGCGCGCATTGACCACGCCTTGCGCAACCTTCCCAAGGCCAAGG
CCGCCCTGACCGCGGCCCGTACGGCAGGTAACTCCATCTACGTCGTCCCT
GCTATGCAAGCCGAGCTGGACCAGATGTCGGGTGTGCTGCACTGCGAGGA
AGGTGACTACAAGACGTCCCATTCCTATTTCCTGGAGGCATTTGAGGCCT
TCGATTCCTTGTCGGATCCTCGCGCACGCAAGTGCCTGGAGTACATGATG
CTGTGCTCCATCTTGCAAGGAACGCCCCAGGAGGTGTCGGCAGTGACGAG
CAAGCACGGGCTGAAATACGCGGGGGAGGGAATGAGTGCTCTAGTGGCGA
TAGCGGCCGCGGCGAAGGCGCGAAGTTTGGAGCTATTCGACGGGGCAAGG
GAGGAATATGGGGGGGTGTTGGCGGGGGATTTGTTGATGAAGCACCACGT
GCACATCGTGTATGAGCAGCTGCTGGAGTCGAATCTGTTGAAGATTATTG
AGCCCTTTTCGTGCGTGGAGATAAGTCATGTGGCGTCTCTCATCAACCTG
CCGGAGAAGACGGTGGAAAAGAAGTTGTCGCAGATGATTCTGGATGACAA
GATATTGGGGACGTTGGACCAGGGGCAGGGGCAGCTGCTGGTGTATGAGG
GTAGTGGCTTGGATAAGACGTACACGCATGGGTTGGAGGTGATTGGAAAT
TTGGGGATGGTTGTGGACAGCTTGTTCAGGCGGGCGCAGAAAATGTTGCA
CTCAGGGCATGTGGTGGGAGGGGTGGGAGGAAGTGGGGAAGGGCCGGTGG
AGAGTGCGTAA

Synonyms

Publications