|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr7 | genome | chr7:1054867..1057296 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03770.1 vs.
Match: EWM26990.1 (START-like domain protein [Nannochloropsis gaditana]) HSP 1 Score: 201.8 bits (512), Expect = 2.500e-48 Identity = 105/165 (63.64%), Postives = 121/165 (73.33%), Query Frame = 0
Query: 90 DVVVDVDKYKLFLPYCTQSKVLRRIPPNFILAQLLVGFNNVLNERYTSRIRVERPKSIVIAALDSHIFTRLESTWQFQP---------GPAFAAEMSSSS-SSSSSTHVDFRVRFEVSNPLTQAAIDLIFADLVERQIHAFEDRCFAVYGEGIEGGKMRKKIGEE 245
DVV DVD YK FLPYCTQS VLRR+PPNF+LAQL+VGFNN+L E+YTSR+R++RP+SI IAALDS IFTRLESTW FQP G A + THVDFR+RF+VSN L Q AID++F DLVERQIHAFEDRC AVYG G GK ++ GEE
Sbjct: 19 DVVADVDNYKSFLPYCTQSAVLRRVPPNFMLAQLIVGFNNLLKEKYTSRVRLDRPRSITIAALDSKIFTRLESTWNFQPTWEDKEGGSGDGTAGGRGKDTRKGDGCTHVDFRIRFQVSNSLAQKAIDMVFEDLVERQIHAFEDRCHAVYGSG--AGKGGREDGEE 181
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp CAGGCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGT AGGGAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTT CCTCCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCAT GTTGCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGT GTGAGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCA CCGCGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGATGTTG TGGTCGACGTGGACAAGTACAAGCTCTTCCTCCCCTATTGCACCCAGTCT AAAGTCTTGCGGCGGATCCCTCCCAATTTCATTCTGGCCCAACTCCTCGT CGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGAATTCGTGTCG AACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCATATATTTACA CGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCTTCGCGGCAGA AATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTCGATTTCAGAG TCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAATCGACTTAATC TTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAGACAGATGTTT TGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGGAAGAAGATAG GAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACGATAAAAATAA AATAACTAAGTTCAATCGAATGGCGCCAAATGCGATTTTTCCTCTTTCTC GTGATAGCTTTCTCATGTACACACCAGTCGCTCCTTGTCTCCCATACATC CTCCCTCCCTCCCACTCGCCGCAACCCCCCTTCCTTCCCTCCCTTTGCCC TCACAATTCCTCCTTCTCTCCCTCCTTCATCGTCCCCACGCTTCGTTCCT CCATGAACTCAAGCGCATTCCCATCCGGATCCCGGCAAAACACGGCCCGT CTGCCTGACTTACTCATGGTGTAAGGTACCCCCCCCTCGGTCAATCTCTC TAGCAGCGGCTCGATATTTTCGACAGTAAAAGCGACGTGTCTATCCCTCC CCCCATGCTCGGGACGCCCACGTGTCGGGTCTGGGTTAGGCAGCTCCATG AGATGAATTTGTTGAGCACCGCCGCGGACGAAGGCCCCGGGAAATGGGAG GGTGGATGGACGCATGTGGGTGTCGTCCTCGAAGCCGAGGGTGCGGAGGT AGAAATTCTTTGAGGACATGTTAAGAGGTGGGACCGAAGGTGAAGAAAGT AAGATGGGGGTCATGGCATAAAAAAGTCTATCTCCTGGAAGTCGAGTCAT CCATGGTTATTATCATCACTACCATCCCTCCCCAGTCGACATAAACTTCG TCGTTGTGGCAGAAGCGGGGCCTACACAGAAAACGTACCAGCGACGCTTG GGTATCCGAAACTAGGATCCCAGCATGAGCAATGCCGCCAAAGGTGGGCT TGGGTGTCTTGAGGGCAATAACCAGGACAAAGCCGTGCGTCGAAGCGAGC ACCATAGATAAGGCGGCGGCCAAGCACAAGGGGGAAAAGCAGGACTGGCG GCGACGTGTGGCCATGATAAATTGATTTGAGCAGACTCTAGACGAATTGC GGCAGGAGAAGAAAAACGGGGGTGTTGGTCTGTGGCGTGTATGTAGTAGT GTCGCTTGCTTGAGCGCATGACATGTCGAAGACCAAGCGACGCAAAGAGG GTCGCGCCCACCCACGCTTCTGTTACAGGATCTACAACCAAAGTATTAAA GCATTCGAGACTGCGCCAAGCCTGGCCACAAAGAGGTATGTGCGAACGAG GGAGAACCTTTGTGTGCGTGCAAAAGCAAAAAAAGTCTCGGGGTTGGTTG GGCTTCGCCAAACAGATTTCTAACGGGCGGGCGGATATGTGGGCCTTGCA TTACCTCGTATTACCGGTACGTAATGATGAAATCCCGCACCTAAAGGGGG CGTCTAAGTAGGAGAGTGCTAAAATGGAGAAAGCTGGAGGAAGGAAAGGG AAGGGAAACCAATGAATAAGAGTTATTGCTGGAGACAACCCATACTGATA AAGATCGAAGGAGAATCCTG back to topprotein sequence of NO07G03770.1 >NO07G03770.1-protein ID=NO07G03770.1-protein|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp MAFLVRGGRERLVSWVTRSSPRLPFLPHSCRPPVPLPSPYPCCSHYYHRQ LRPASTSSVSQNSTTIKREGKTAEHRVTRVVPFTCEQLFDVVVDVDKYKL FLPYCTQSKVLRRIPPNFILAQLLVGFNNVLNERYTSRIRVERPKSIVIA ALDSHIFTRLESTWQFQPGPAFAAEMSSSSSSSSSTHVDFRVRFEVSNPL TQAAIDLIFADLVERQIHAFEDRCFAVYGEGIEGGKMRKKIGEEEKEASA SDLKR* back to topmRNA from alignment at chr7:1054867..1057296+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr7:1054867..1057296+ (Nannochloropsis oceanica) CAGGCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGT
AGGGAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTT
CCTCCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCAT
GTTGCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGT
GTGAGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCA
CCGCGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGGTAAGC
CTTCCAATGCGCGGGAGGGTTGCAACGGATGTAGTACCACCAGCTATACC
AACGCCACCCAAATGTATGCATCACTGACAAACTTCTTTCTCATTTATTT
CATTTTCAATAGATGTTGTGGTCGACGTGGACAAGTACAAGCTCTTCCTC
CCCTATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAATTTCAT
TCTGGTACGTCTCTCCCTTTCGCTTGAATATTCGCGCGGGAGACAAGAAA
TGCTGTAAATTTTTTGATACGTGACTTACCTGGGAATTCATCGATCAGCT
CCGAGCACTGCCTCACCCTCCTTCCCTCCCCCATCTCCACCCTCAGGCCC
AACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGA
ATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCA
TATATTTACACGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCT
TCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTC
GATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAAT
CGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAG
ACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGG
AAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACG
ATAAAAATAAAATAACTAAGTTCAATCGAATGGCGCCAAATGCGATTTTT
CCTCTTTCTCGTGATAGCTTTCTCATGTACACACCAGTCGCTCCTTGTCT
CCCATACATCCTCCCTCCCTCCCACTCGCCGCAACCCCCCTTCCTTCCCT
CCCTTTGCCCTCACAATTCCTCCTTCTCTCCCTCCTTCATCGTCCCCACG
CTTCGTTCCTCCATGAACTCAAGCGCATTCCCATCCGGATCCCGGCAAAA
CACGGCCCGTCTGCCTGACTTACTCATGGTGTAAGGTACCCCCCCCTCGG
TCAATCTCTCTAGCAGCGGCTCGATATTTTCGACAGTAAAAGCGACGTGT
CTATCCCTCCCCCCATGCTCGGGACGCCCACGTGTCGGGTCTGGGTTAGG
CAGCTCCATGAGATGAATTTGTTGAGCACCGCCGCGGACGAAGGCCCCGG
GAAATGGGAGGGTGGATGGACGCATGTGGGTGTCGTCCTCGAAGCCGAGG
GTGCGGAGGTAGAAATTCTTTGAGGACATGTTAAGAGGTGGGACCGAAGG
TGAAGAAAGTAAGATGGGGGTCATGGCATAAAAAAGTCTATCTCCTGGAA
GTCGAGTCATCCATGGTTATTATCATCACTACCATCCCTCCCCAGTCGAC
ATAAACTTCGTCGTTGTGGCAGAAGCGGGGCCTACACAGAAAACGTACCA
GCGACGCTTGGGTATCCGAAACTAGGATCCCAGCATGAGCAATGCCGCCA
AAGGTGGGCTTGGGTGTCTTGAGGGCAATAACCAGGACAAAGCCGTGCGT
CGAAGCGAGCACCATAGATAAGGCGGCGGCCAAGCACAAGGGGGAAAAGC
AGGACTGGCGGCGACGTGTGGCCATGATAAATTGATTTGAGCAGACTCTA
GACGAATTGCGGCAGGAGAAGAAAAACGGGGGTGTTGGTCTGTGGCGTGT
ATGTAGTAGTGTCGCTTGCTTGAGCGCATGACATGTCGAAGACCAAGCGA
CGCAAAGAGGGTCGCGCCCACCCACGCTTCTGTTACAGGATCTACAACCA
AAGTATTAAAGCATTCGAGACTGCGCCAAGCCTGGCCACAAAGAGGTATG
TGCGAACGAGGGAGAACCTTTGTGTGCGTGCAAAAGCAAAAAAAGTCTCG
GGGTTGGTTGGGCTTCGCCAAACAGATTTCTAACGGGCGGGCGGATATGT
GGGCCTTGCATTACCTCGTATTACCGGTACGTAATGATGAAATCCCGCAC
CTAAAGGGGGCGTCTAAGTAGGAGAGTGCTAAAATGGAGAAAGCTGGAGG
AAGGAAAGGGAAGGGAAACCAATGAATAAGAGTTATTGCTGGAGACAACC
CATACTGATAAAGATCGAAGGAGAATCCTG back to topCoding sequence (CDS) from alignment at chr7:1054867..1057296+ >NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr7:1054867..1057296+ (Nannochloropsis oceanica) ATGGCCTTCCTGGTACGCGGTGGTAGGGAACGCCTGGTGTCCTGGGTCAC ACGCAGCAGTCCTCGCCTCCCCTTCCTCCCTCACAGCTGTCGACCTCCCG TCCCCCTGCCCTCGCCATACCCATGTTGCAGCCACTACTACCACCGCCAG CTGCGACCCGCCAGCACCAGCAGTGTGAGCCAAAACTCCACCACTATAAA AAGGGAGGGGAAGACGGCCGAGCACCGCGTCACACGTGTCGTTCCCTTCA CATGCGAACAGCTCTTTGATGTTGTGGTCGACGTGGACAAGTACAAGCTC TTCCTCCCCTATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAA TTTCATTCTGGCCCAACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGC GCTACACCTCCCGAATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCG GCCTTAGATAGCCATATATTTACACGCTTGGAAAGCACGTGGCAGTTTCA GCCGGGCCCTGCCTTCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCA GCAGCACCCATGTCGATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTG ACGCAGGCGGCAATCGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGAT ACACGCATTCGAAGACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGG GAGGGAAGATGAGGAAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCA AGTGACCTTAAACGATAA back to top
|