NO07G03770.1, NO07G03770.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO07G03770.1
Unique NameNO07G03770.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2170
Alignment locationchr7:1054867..1057296 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr7genomechr7:1054867..1057296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO07G03770.1 vs.
Match: EWM26990.1 (START-like domain protein [Nannochloropsis gaditana])

HSP 1 Score: 201.8 bits (512), Expect = 2.500e-48
Identity = 105/165 (63.64%), Postives = 121/165 (73.33%), Query Frame = 0
Query:   90 DVVVDVDKYKLFLPYCTQSKVLRRIPPNFILAQLLVGFNNVLNERYTSRIRVERPKSIVIAALDSHIFTRLESTWQFQP---------GPAFAAEMSSSS-SSSSSTHVDFRVRFEVSNPLTQAAIDLIFADLVERQIHAFEDRCFAVYGEGIEGGKMRKKIGEE 245
            DVV DVD YK FLPYCTQS VLRR+PPNF+LAQL+VGFNN+L E+YTSR+R++RP+SI IAALDS IFTRLESTW FQP         G   A      +      THVDFR+RF+VSN L Q AID++F DLVERQIHAFEDRC AVYG G   GK  ++ GEE
Sbjct:   19 DVVADVDNYKSFLPYCTQSAVLRRVPPNFMLAQLIVGFNNLLKEKYTSRVRLDRPRSITIAALDSKIFTRLESTWNFQPTWEDKEGGSGDGTAGGRGKDTRKGDGCTHVDFRIRFQVSNSLAQKAIDMVFEDLVERQIHAFEDRCHAVYGSG--AGKGGREDGEE 181          
The following BLAST results are available for this feature:
BLAST of NO07G03770.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM26990.12.500e-4863.64START-like domain protein [Nannochloropsis gaditan... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO07G03770NO07G03770Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO07G03770.1NO07G03770.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO07G03770.1.cds1NO07G03770.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03770.1.cds2NO07G03770.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO07G03770.1.cds3NO07G03770.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2170bp
CAGGCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGT
AGGGAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTT
CCTCCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCAT
GTTGCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGT
GTGAGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCA
CCGCGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGATGTTG
TGGTCGACGTGGACAAGTACAAGCTCTTCCTCCCCTATTGCACCCAGTCT
AAAGTCTTGCGGCGGATCCCTCCCAATTTCATTCTGGCCCAACTCCTCGT
CGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGAATTCGTGTCG
AACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCATATATTTACA
CGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCTTCGCGGCAGA
AATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTCGATTTCAGAG
TCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAATCGACTTAATC
TTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAGACAGATGTTT
TGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGGAAGAAGATAG
GAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACGATAAAAATAA
AATAACTAAGTTCAATCGAATGGCGCCAAATGCGATTTTTCCTCTTTCTC
GTGATAGCTTTCTCATGTACACACCAGTCGCTCCTTGTCTCCCATACATC
CTCCCTCCCTCCCACTCGCCGCAACCCCCCTTCCTTCCCTCCCTTTGCCC
TCACAATTCCTCCTTCTCTCCCTCCTTCATCGTCCCCACGCTTCGTTCCT
CCATGAACTCAAGCGCATTCCCATCCGGATCCCGGCAAAACACGGCCCGT
CTGCCTGACTTACTCATGGTGTAAGGTACCCCCCCCTCGGTCAATCTCTC
TAGCAGCGGCTCGATATTTTCGACAGTAAAAGCGACGTGTCTATCCCTCC
CCCCATGCTCGGGACGCCCACGTGTCGGGTCTGGGTTAGGCAGCTCCATG
AGATGAATTTGTTGAGCACCGCCGCGGACGAAGGCCCCGGGAAATGGGAG
GGTGGATGGACGCATGTGGGTGTCGTCCTCGAAGCCGAGGGTGCGGAGGT
AGAAATTCTTTGAGGACATGTTAAGAGGTGGGACCGAAGGTGAAGAAAGT
AAGATGGGGGTCATGGCATAAAAAAGTCTATCTCCTGGAAGTCGAGTCAT
CCATGGTTATTATCATCACTACCATCCCTCCCCAGTCGACATAAACTTCG
TCGTTGTGGCAGAAGCGGGGCCTACACAGAAAACGTACCAGCGACGCTTG
GGTATCCGAAACTAGGATCCCAGCATGAGCAATGCCGCCAAAGGTGGGCT
TGGGTGTCTTGAGGGCAATAACCAGGACAAAGCCGTGCGTCGAAGCGAGC
ACCATAGATAAGGCGGCGGCCAAGCACAAGGGGGAAAAGCAGGACTGGCG
GCGACGTGTGGCCATGATAAATTGATTTGAGCAGACTCTAGACGAATTGC
GGCAGGAGAAGAAAAACGGGGGTGTTGGTCTGTGGCGTGTATGTAGTAGT
GTCGCTTGCTTGAGCGCATGACATGTCGAAGACCAAGCGACGCAAAGAGG
GTCGCGCCCACCCACGCTTCTGTTACAGGATCTACAACCAAAGTATTAAA
GCATTCGAGACTGCGCCAAGCCTGGCCACAAAGAGGTATGTGCGAACGAG
GGAGAACCTTTGTGTGCGTGCAAAAGCAAAAAAAGTCTCGGGGTTGGTTG
GGCTTCGCCAAACAGATTTCTAACGGGCGGGCGGATATGTGGGCCTTGCA
TTACCTCGTATTACCGGTACGTAATGATGAAATCCCGCACCTAAAGGGGG
CGTCTAAGTAGGAGAGTGCTAAAATGGAGAAAGCTGGAGGAAGGAAAGGG
AAGGGAAACCAATGAATAAGAGTTATTGCTGGAGACAACCCATACTGATA
AAGATCGAAGGAGAATCCTG
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protein sequence of NO07G03770.1

>NO07G03770.1-protein ID=NO07G03770.1-protein|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MAFLVRGGRERLVSWVTRSSPRLPFLPHSCRPPVPLPSPYPCCSHYYHRQ
LRPASTSSVSQNSTTIKREGKTAEHRVTRVVPFTCEQLFDVVVDVDKYKL
FLPYCTQSKVLRRIPPNFILAQLLVGFNNVLNERYTSRIRVERPKSIVIA
ALDSHIFTRLESTWQFQPGPAFAAEMSSSSSSSSSTHVDFRVRFEVSNPL
TQAAIDLIFADLVERQIHAFEDRCFAVYGEGIEGGKMRKKIGEEEKEASA
SDLKR*
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mRNA from alignment at chr7:1054867..1057296+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr7:1054867..1057296+ (Nannochloropsis oceanica)
CAGGCGAGCAGACATAAGTCTTCCCTATGGCCTTCCTGGTACGCGGTGGT AGGGAACGCCTGGTGTCCTGGGTCACACGCAGCAGTCCTCGCCTCCCCTT CCTCCCTCACAGCTGTCGACCTCCCGTCCCCCTGCCCTCGCCATACCCAT GTTGCAGCCACTACTACCACCGCCAGCTGCGACCCGCCAGCACCAGCAGT GTGAGCCAAAACTCCACCACTATAAAAAGGGAGGGGAAGACGGCCGAGCA CCGCGTCACACGTGTCGTTCCCTTCACATGCGAACAGCTCTTTGGTAAGC CTTCCAATGCGCGGGAGGGTTGCAACGGATGTAGTACCACCAGCTATACC AACGCCACCCAAATGTATGCATCACTGACAAACTTCTTTCTCATTTATTT CATTTTCAATAGATGTTGTGGTCGACGTGGACAAGTACAAGCTCTTCCTC CCCTATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAATTTCAT TCTGGTACGTCTCTCCCTTTCGCTTGAATATTCGCGCGGGAGACAAGAAA TGCTGTAAATTTTTTGATACGTGACTTACCTGGGAATTCATCGATCAGCT CCGAGCACTGCCTCACCCTCCTTCCCTCCCCCATCTCCACCCTCAGGCCC AACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGCGCTACACCTCCCGA ATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCGGCCTTAGATAGCCA TATATTTACACGCTTGGAAAGCACGTGGCAGTTTCAGCCGGGCCCTGCCT TCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCAGCAGCACCCATGTC GATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTGACGCAGGCGGCAAT CGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGATACACGCATTCGAAG ACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGGGAGGGAAGATGAGG AAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCAAGTGACCTTAAACG ATAAAAATAAAATAACTAAGTTCAATCGAATGGCGCCAAATGCGATTTTT CCTCTTTCTCGTGATAGCTTTCTCATGTACACACCAGTCGCTCCTTGTCT CCCATACATCCTCCCTCCCTCCCACTCGCCGCAACCCCCCTTCCTTCCCT CCCTTTGCCCTCACAATTCCTCCTTCTCTCCCTCCTTCATCGTCCCCACG CTTCGTTCCTCCATGAACTCAAGCGCATTCCCATCCGGATCCCGGCAAAA CACGGCCCGTCTGCCTGACTTACTCATGGTGTAAGGTACCCCCCCCTCGG TCAATCTCTCTAGCAGCGGCTCGATATTTTCGACAGTAAAAGCGACGTGT CTATCCCTCCCCCCATGCTCGGGACGCCCACGTGTCGGGTCTGGGTTAGG CAGCTCCATGAGATGAATTTGTTGAGCACCGCCGCGGACGAAGGCCCCGG GAAATGGGAGGGTGGATGGACGCATGTGGGTGTCGTCCTCGAAGCCGAGG GTGCGGAGGTAGAAATTCTTTGAGGACATGTTAAGAGGTGGGACCGAAGG TGAAGAAAGTAAGATGGGGGTCATGGCATAAAAAAGTCTATCTCCTGGAA GTCGAGTCATCCATGGTTATTATCATCACTACCATCCCTCCCCAGTCGAC ATAAACTTCGTCGTTGTGGCAGAAGCGGGGCCTACACAGAAAACGTACCA GCGACGCTTGGGTATCCGAAACTAGGATCCCAGCATGAGCAATGCCGCCA AAGGTGGGCTTGGGTGTCTTGAGGGCAATAACCAGGACAAAGCCGTGCGT CGAAGCGAGCACCATAGATAAGGCGGCGGCCAAGCACAAGGGGGAAAAGC AGGACTGGCGGCGACGTGTGGCCATGATAAATTGATTTGAGCAGACTCTA GACGAATTGCGGCAGGAGAAGAAAAACGGGGGTGTTGGTCTGTGGCGTGT ATGTAGTAGTGTCGCTTGCTTGAGCGCATGACATGTCGAAGACCAAGCGA CGCAAAGAGGGTCGCGCCCACCCACGCTTCTGTTACAGGATCTACAACCA AAGTATTAAAGCATTCGAGACTGCGCCAAGCCTGGCCACAAAGAGGTATG TGCGAACGAGGGAGAACCTTTGTGTGCGTGCAAAAGCAAAAAAAGTCTCG GGGTTGGTTGGGCTTCGCCAAACAGATTTCTAACGGGCGGGCGGATATGT GGGCCTTGCATTACCTCGTATTACCGGTACGTAATGATGAAATCCCGCAC CTAAAGGGGGCGTCTAAGTAGGAGAGTGCTAAAATGGAGAAAGCTGGAGG AAGGAAAGGGAAGGGAAACCAATGAATAAGAGTTATTGCTGGAGACAACC CATACTGATAAAGATCGAAGGAGAATCCTG
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Coding sequence (CDS) from alignment at chr7:1054867..1057296+

>NO07G03770.1 ID=NO07G03770.1|Name=NO07G03770.1|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at chr7:1054867..1057296+ (Nannochloropsis oceanica)
ATGGCCTTCCTGGTACGCGGTGGTAGGGAACGCCTGGTGTCCTGGGTCAC
ACGCAGCAGTCCTCGCCTCCCCTTCCTCCCTCACAGCTGTCGACCTCCCG
TCCCCCTGCCCTCGCCATACCCATGTTGCAGCCACTACTACCACCGCCAG
CTGCGACCCGCCAGCACCAGCAGTGTGAGCCAAAACTCCACCACTATAAA
AAGGGAGGGGAAGACGGCCGAGCACCGCGTCACACGTGTCGTTCCCTTCA
CATGCGAACAGCTCTTTGATGTTGTGGTCGACGTGGACAAGTACAAGCTC
TTCCTCCCCTATTGCACCCAGTCTAAAGTCTTGCGGCGGATCCCTCCCAA
TTTCATTCTGGCCCAACTCCTCGTCGGCTTCAACAATGTCCTCAATGAGC
GCTACACCTCCCGAATTCGTGTCGAACGTCCCAAATCCATTGTCATCGCG
GCCTTAGATAGCCATATATTTACACGCTTGGAAAGCACGTGGCAGTTTCA
GCCGGGCCCTGCCTTCGCGGCAGAAATGAGCAGCAGCAGCAGCAGCAGCA
GCAGCACCCATGTCGATTTCAGAGTCAGATTCGAGGTGTCAAATCCATTG
ACGCAGGCGGCAATCGACTTAATCTTCGCTGATTTGGTCGAGAGGCAGAT
ACACGCATTCGAAGACAGATGTTTTGCAGTGTATGGGGAAGGGATTGAGG
GAGGGAAGATGAGGAAGAAGATAGGAGAGGAAGAAAAAGAGGCAAGTGCA
AGTGACCTTAAACGATAA
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Synonyms
Publications