|
|
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr7 | genome | chr7:1054867..1057296 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO07G03760.1 vs.
Match: EWM26975.1 (glyoxalase bleomycin resistance protein dioxygenase [Nannochloropsis gaditana]) HSP 1 Score: 271.6 bits (693), Expect = 1.800e-69 Identity = 131/157 (83.44%), Postives = 143/157 (91.08%), Query Frame = 0
Query: 21 MVLASTHGFVLVIALKTPKPTFGGIAHAGILVSDTQASLNFYLRTLGFEDDTHMRPSTLPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTVENIEPLLERLTEGGVPYTMSKSGRRAVFCRDPDGNALEFMEERSVGTMKEGEKEEL 178
+V ST GFVL ++LK+PKP FGGIAHAGILVSDTQ+S+ FYL LGFEDDTH+RPSTLPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTV+NI+PL+ RLTE GVP+TMSKSGRRAVFCRD DGNALEFMEE SVG +EGEKEEL
Sbjct: 20 LVSRSTDGFVLSMSLKSPKPVFGGIAHAGILVSDTQSSMRFYLDVLGFEDDTHLRPSTLPFPGAFVRGGAQQIHLMELPNPDPTRGRPEHGGRDRHVAFTVDNIDPLMARLTEEGVPFTMSKSGRRAVFCRDLDGNALEFMEEGSVG-RREGEKEEL 175
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO07G03760.1 ID=NO07G03760.1|Name=NO07G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2249bp
CAGGATTCTCCTTCGATCTTTATCAGTATGGGTTGTCTCCAGCAATAACT
CTTATTCATTGGTTTCCCTTCCCTTTCCTTCCTCCAGCTTTCTCCATTTT
AGCACTCTCCTACTTAGACGCCCCCTTTAGGTGCGGGATTTCATCATTAC
GTACCGGTAATACGAGGTAATGCAAGGCCCACATATCCGCCCGCCCGTTA
GAAATCTGTTTGGCGAAGCCCAACCAACCCCGAGACTTTTTTTGCTTTTG
CACGCACACAAAGGTTCTCCCTCGTTCGCACATACCTCTTTGTGGCCAGG
CTTGGCGCAGTCTCGAATGCTTTAATACTTTGGTTGTAGATCCTGTAACA
GAAGCGTGGGTGGGCGCGACCCTCTTTGCGTCGCTTGGTCTTCGACATGT
CATGCGCTCAAGCAAGCGACACTACTACATACACGCCACAGACCAACACC
CCCGTTTTTCTTCTCCTGCCGCAATTCGTCTAGAGTCTGCTCAAATCAAT
TTATCATGGCCACACGTCGCCGCCAGTCCTGCTTTTCCCCCTTGTGCTTG
GCCGCCGCCTTATCTATGGTGCTCGCTTCGACGCACGGCTTTGTCCTGGT
TATTGCCCTCAAGACACCCAAGCCCACCTTTGGCGGCATTGCTCATGCTG
GGATCCTAGTTTCGGATACCCAAGCGTCGCTGAATTTCTACCTCCGCACC
CTCGGCTTCGAGGACGACACCCACATGCGTCCATCCACCCTCCCATTTCC
CGGGGCCTTCGTCCGCGGCGGTGCTCAACAAATTCATCTCATGGAGCTGC
CTAACCCAGACCCGACACGTGGGCGTCCCGAGCATGGGGGGAGGGATAGA
CACGTCGCTTTTACTGTCGAAAATATCGAGCCGCTGCTAGAGAGATTGAC
CGAGGGGGGGGTACCTTACACCATGAGTAAGTCAGGCAGACGGGCCGTGT
TTTGCCGGGATCCGGATGGGAATGCGCTTGAGTTCATGGAGGAACGAAGC
GTGGGGACGATGAAGGAGGGAGAGAAGGAGGAATTGTGAGGGCAAAGGGA
GGGAAGGAAGGGGGGTTGCGGCGAGTGGGAGGGAGGGAGGATGTATGGGA
GACAAGGAGCGACTGGTGTGTACATGAGAAAGCTATCACGAGAAAGAGGA
AAAATCGCATTTGGCGCCATTCGATTGAACTTAGTTATTTTATTTTTATC
GTTTAAGGTCACTTGCACTTGCCTCTTTTTCTTCCTCTCCTATCTTCTTC
CTCATCTTCCCTCCCTCAATCCCTTCCCCATACACTGCAAAACATCTGTC
TTCGAATGCGTGTATCTGCCTCTCGACCAAATCAGCGAAGATTAAGTCGA
TTGCCGCCTGCGTCAATGGATTTGACACCTCGAATCTGACTCTGAAATCG
ACATGGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTCATTTCTGCCGCGAA
GGCAGGGCCCGGCTGAAACTGCCACGTGCTTTCCAAGCGTGTAAATATAT
GGCTATCTAAGGCCGCGATGACAATGGATTTGGGACGTTCGACACGAATT
CGGGAGGTGTAGCGCTCATTGAGGACATTGTTGAAGCCGACGAGGAGTTG
GGCCTGAGGGTGGAGATGGGGGAGGGAAGGAGGGTGAGGCAGTGCTCGGA
GCTGATCGATGAATTCCCAGGTAAGTCACGTATCAAAAAATTTACAGCAT
TTCTTGTCTCCCGCGCGAATATTCAAGCGAAAGGGAGAGACGTACCAGAA
TGAAATTGGGAGGGATCCGCCGCAAGACTTTAGACTGGGTGCAATAGGGG
AGGAAGAGCTTGTACTTGTCCACGTCGACCACAACATCTATTGAAAATGA
AATAAATGAGAAAGAAGTTTGTCAGTGATGCATACATTTGGGTGGCGTTG
GTATAGCTGGTGGTACTACATCCGTTGCAACCCTCCCGCGCATTGGAAGG
CTTACCAAAGAGCTGTTCGCATGTGAAGGGAACGACACGTGTGACGCGGT
GCTCGGCCGTCTTCCCCTCCCTTTTTATAGTGGTGGAGTTTTGGCTCACA
CTGCTGGTGCTGGCGGGTCGCAGCTGGCGGTGGTAGTAGTGGCTGCAACA
TGGGTATGGCGAGGGCAGGGGGACGGGAGGTCGACAGCTGTGAGGGAGGA
AGGGGAGGCGAGGACTGCTGCGTGTGACCCAGGACACCAGGCGTTCCCTA
CCACCGCGTACCAGGAAGGCCATAGGGAAGACTTATGTCTGCTCGCCTG back to topprotein sequence of NO07G03760.1 >NO07G03760.1-protein ID=NO07G03760.1-protein|Name=NO07G03760.1|organism=Nannochloropsis oceanica|type=polypeptide|length=178bp
MATRRRQSCFSPLCLAAALSMVLASTHGFVLVIALKTPKPTFGGIAHAGI
LVSDTQASLNFYLRTLGFEDDTHMRPSTLPFPGAFVRGGAQQIHLMELPN
PDPTRGRPEHGGRDRHVAFTVENIEPLLERLTEGGVPYTMSKSGRRAVFC
RDPDGNALEFMEERSVGTMKEGEKEEL* back to topmRNA from alignment at chr7:1054867..1057296- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO07G03760.1 ID=NO07G03760.1|Name=NO07G03760.1|organism=Nannochloropsis oceanica|type=mRNA|length=2430bp|location=Sequence derived from alignment at chr7:1054867..1057296- (Nannochloropsis oceanica)
CAGGATTCTCCTTCGATCTTTATCAGTATGGGTTGTCTCCAGCAATAACT
CTTATTCATTGGTTTCCCTTCCCTTTCCTTCCTCCAGCTTTCTCCATTTT
AGCACTCTCCTACTTAGACGCCCCCTTTAGGTGCGGGATTTCATCATTAC
GTACCGGTAATACGAGGTAATGCAAGGCCCACATATCCGCCCGCCCGTTA
GAAATCTGTTTGGCGAAGCCCAACCAACCCCGAGACTTTTTTTGCTTTTG
CACGCACACAAAGGTTCTCCCTCGTTCGCACATACCTCTTTGTGGCCAGG
CTTGGCGCAGTCTCGAATGCTTTAATACTTTGGTTGTAGATCCTGTAACA
GAAGCGTGGGTGGGCGCGACCCTCTTTGCGTCGCTTGGTCTTCGACATGT
CATGCGCTCAAGCAAGCGACACTACTACATACACGCCACAGACCAACACC
CCCGTTTTTCTTCTCCTGCCGCAATTCGTCTAGAGTCTGCTCAAATCAAT
TTATCATGGCCACACGTCGCCGCCAGTCCTGCTTTTCCCCCTTGTGCTTG
GCCGCCGCCTTATCTATGGTGCTCGCTTCGACGCACGGCTTTGTCCTGGT
TATTGCCCTCAAGACACCCAAGCCCACCTTTGGCGGCATTGCTCATGCTG
GGATCCTAGTTTCGGATACCCAAGCGTCGCTGGTACGTTTTCTGTGTAGG
CCCCGCTTCTGCCACAACGACGAAGTTTATGTCGACTGGGGAGGGATGGT
AGTGATGATAATAACCATGGATGACTCGACTTCCAGGAGATAGACTTTTT
TATGCCATGACCCCCATCTTACTTTCTTCACCTTCGGTCCCACCTCTTAA
CATGTCCTCAAAGAATTTCTACCTCCGCACCCTCGGCTTCGAGGACGACA
CCCACATGCGTCCATCCACCCTCCCATTTCCCGGGGCCTTCGTCCGCGGC
GGTGCTCAACAAATTCATCTCATGGAGCTGCCTAACCCAGACCCGACACG
TGGGCGTCCCGAGCATGGGGGGAGGGATAGACACGTCGCTTTTACTGTCG
AAAATATCGAGCCGCTGCTAGAGAGATTGACCGAGGGGGGGGTACCTTAC
ACCATGAGTAAGTCAGGCAGACGGGCCGTGTTTTGCCGGGATCCGGATGG
GAATGCGCTTGAGTTCATGGAGGAACGAAGCGTGGGGACGATGAAGGAGG
GAGAGAAGGAGGAATTGTGAGGGCAAAGGGAGGGAAGGAAGGGGGGTTGC
GGCGAGTGGGAGGGAGGGAGGATGTATGGGAGACAAGGAGCGACTGGTGT
GTACATGAGAAAGCTATCACGAGAAAGAGGAAAAATCGCATTTGGCGCCA
TTCGATTGAACTTAGTTATTTTATTTTTATCGTTTAAGGTCACTTGCACT
TGCCTCTTTTTCTTCCTCTCCTATCTTCTTCCTCATCTTCCCTCCCTCAA
TCCCTTCCCCATACACTGCAAAACATCTGTCTTCGAATGCGTGTATCTGC
CTCTCGACCAAATCAGCGAAGATTAAGTCGATTGCCGCCTGCGTCAATGG
ATTTGACACCTCGAATCTGACTCTGAAATCGACATGGGTGCTGCTGCTGC
TGCTGCTGCTGCTGCTCATTTCTGCCGCGAAGGCAGGGCCCGGCTGAAAC
TGCCACGTGCTTTCCAAGCGTGTAAATATATGGCTATCTAAGGCCGCGAT
GACAATGGATTTGGGACGTTCGACACGAATTCGGGAGGTGTAGCGCTCAT
TGAGGACATTGTTGAAGCCGACGAGGAGTTGGGCCTGAGGGTGGAGATGG
GGGAGGGAAGGAGGGTGAGGCAGTGCTCGGAGCTGATCGATGAATTCCCA
GGTAAGTCACGTATCAAAAAATTTACAGCATTTCTTGTCTCCCGCGCGAA
TATTCAAGCGAAAGGGAGAGACGTACCAGAATGAAATTGGGAGGGATCCG
CCGCAAGACTTTAGACTGGGTGCAATAGGGGAGGAAGAGCTTGTACTTGT
CCACGTCGACCACAACATCTATTGAAAATGAAATAAATGAGAAAGAAGTT
TGTCAGTGATGCATACATTTGGGTGGCGTTGGTATAGCTGGTGGTACTAC
ATCCGTTGCAACCCTCCCGCGCATTGGAAGGCTTACCAAAGAGCTGTTCG
CATGTGAAGGGAACGACACGTGTGACGCGGTGCTCGGCCGTCTTCCCCTC
CCTTTTTATAGTGGTGGAGTTTTGGCTCACACTGCTGGTGCTGGCGGGTC
GCAGCTGGCGGTGGTAGTAGTGGCTGCAACATGGGTATGGCGAGGGCAGG
GGGACGGGAGGTCGACAGCTGTGAGGGAGGAAGGGGAGGCGAGGACTGCT
GCGTGTGACCCAGGACACCAGGCGTTCCCTACCACCGCGTACCAGGAAGG
CCATAGGGAAGACTTATGTCTGCTCGCCTG back to topCoding sequence (CDS) from alignment at chr7:1054867..1057296- >NO07G03760.1 ID=NO07G03760.1|Name=NO07G03760.1|organism=Nannochloropsis oceanica|type=CDS|length=534bp|location=Sequence derived from alignment at chr7:1054867..1057296- (Nannochloropsis oceanica)
ATGGCCACACGTCGCCGCCAGTCCTGCTTTTCCCCCTTGTGCTTGGCCGC
CGCCTTATCTATGGTGCTCGCTTCGACGCACGGCTTTGTCCTGGTTATTG
CCCTCAAGACACCCAAGCCCACCTTTGGCGGCATTGCTCATGCTGGGATC
CTAGTTTCGGATACCCAAGCGTCGCTGAATTTCTACCTCCGCACCCTCGG
CTTCGAGGACGACACCCACATGCGTCCATCCACCCTCCCATTTCCCGGGG
CCTTCGTCCGCGGCGGTGCTCAACAAATTCATCTCATGGAGCTGCCTAAC
CCAGACCCGACACGTGGGCGTCCCGAGCATGGGGGGAGGGATAGACACGT
CGCTTTTACTGTCGAAAATATCGAGCCGCTGCTAGAGAGATTGACCGAGG
GGGGGGTACCTTACACCATGAGTAAGTCAGGCAGACGGGCCGTGTTTTGC
CGGGATCCGGATGGGAATGCGCTTGAGTTCATGGAGGAACGAAGCGTGGG
GACGATGAAGGAGGGAGAGAAGGAGGAATTGTGA back to top
|